Wall clock time and date at job start Tue Mar 31 2020 22:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47241 * 2 1 4 4 H 1.08994 * 109.46886 * 54.60613 * 3 2 1 5 5 C 1.52995 * 109.47130 * 174.60903 * 3 2 1 6 6 N 1.46506 * 109.46834 * 174.99845 * 5 3 2 7 7 C 1.34775 * 119.99821 * 179.97438 * 6 5 3 8 8 O 1.21279 * 120.00210 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99954 * 179.97438 * 7 6 5 10 10 C 1.50697 * 109.47026 * 180.02562 * 9 7 6 11 11 N 1.30276 * 126.28133 * 90.03165 * 10 9 7 12 12 N 1.28670 * 109.37927 * 179.97438 * 11 10 9 13 13 C 1.30274 * 109.38048 * 359.97438 * 12 11 10 14 14 C 1.50703 * 126.27807 * 180.02562 * 13 12 11 15 15 O 1.34362 * 107.43709 * 359.76220 * 13 12 11 16 16 N 1.46901 * 109.46853 * 294.61081 * 3 2 1 17 17 C 1.46906 * 110.99674 * 300.92051 * 16 3 2 18 18 C 1.50702 * 109.46969 * 185.68018 * 17 16 3 19 19 O 1.21289 * 119.99926 * 359.97438 * 18 17 16 20 20 N 1.34771 * 119.99669 * 180.02562 * 18 17 16 21 21 C 1.37103 * 119.99875 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99503 * 359.97438 * 21 20 18 23 23 C 1.38944 * 120.00219 * 179.97438 * 21 20 18 24 24 N 1.31417 * 120.00139 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00063 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47477 * 89.99934 * 25 23 21 27 27 H 1.48505 * 109.47105 * 210.00213 * 25 23 21 28 28 H 1.48505 * 109.47178 * 329.99665 * 25 23 21 29 29 H 1.09001 * 109.47071 * 178.86795 * 1 2 3 30 30 H 1.09001 * 109.47230 * 298.86251 * 1 2 3 31 31 H 1.08997 * 109.47227 * 58.86001 * 1 2 3 32 32 H 1.08999 * 109.47468 * 239.99684 * 2 1 3 33 33 H 1.09002 * 109.47248 * 119.99843 * 2 1 3 34 34 H 1.09005 * 109.47214 * 294.99805 * 5 3 2 35 35 H 1.08996 * 109.47677 * 55.00055 * 5 3 2 36 36 H 0.96995 * 119.99880 * 359.97438 * 6 5 3 37 37 H 1.08992 * 109.47000 * 300.00406 * 9 7 6 38 38 H 1.09004 * 109.46825 * 60.00248 * 9 7 6 39 39 H 1.08997 * 109.47010 * 89.97576 * 14 13 12 40 40 H 1.09004 * 109.46730 * 209.97694 * 14 13 12 41 41 H 1.09001 * 109.47348 * 329.97220 * 14 13 12 42 42 H 1.00896 * 111.00131 * 64.86814 * 16 3 2 43 43 H 1.09002 * 109.47048 * 65.68091 * 17 16 3 44 44 H 1.09004 * 109.47096 * 305.67600 * 17 16 3 45 45 H 0.97000 * 120.00767 * 359.97438 * 20 18 17 46 46 H 0.96999 * 120.00146 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6000 1.9835 0.8377 5 6 3.5639 1.4446 0.1355 6 7 4.0629 2.8169 0.0158 7 6 5.3850 3.0634 0.1046 8 8 6.1616 2.1491 0.2832 9 6 5.8983 4.4749 -0.0191 10 6 7.3994 4.4770 0.1145 11 7 8.2599 4.3539 -0.8559 12 7 9.4531 4.4003 -0.3768 13 6 9.3945 4.5552 0.9154 14 6 10.5679 4.6575 1.8554 15 8 8.0959 4.6129 1.2554 16 7 1.6594 2.0964 -1.2592 17 6 2.2178 1.3803 -2.4140 18 6 1.9258 2.1538 -3.6739 19 8 1.3124 3.1985 -3.6157 20 7 2.3453 1.6841 -4.8654 21 6 2.0792 2.3875 -6.0118 22 1 1.5330 3.3178 -5.9599 23 6 2.5121 1.9036 -7.2401 24 7 2.2575 2.5781 -8.3389 25 14 3.4562 0.2942 -7.3299 26 1 2.5021 -0.8304 -7.5031 27 1 4.3911 0.3324 -8.4831 28 1 4.2262 0.1014 -6.0748 29 1 -0.3633 -1.0275 -0.0203 30 1 -0.3634 0.4961 0.9000 31 1 -0.3633 0.5314 -0.8796 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8428 1.0402 1.1086 35 1 3.9997 0.8297 -0.6519 36 1 3.4418 3.5480 -0.1274 37 1 5.6199 4.8786 -0.9925 38 1 5.4623 5.0903 0.7678 39 1 10.8598 5.7024 1.9598 40 1 10.2879 4.2592 2.8307 41 1 11.4047 4.0846 1.4557 42 1 0.6567 2.1787 -1.3352 43 1 1.7650 0.3911 -2.4817 44 1 3.2962 1.2787 -2.2917 45 1 2.8356 0.8484 -4.9121 46 1 2.5594 2.2401 -9.1965 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481806830.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:50 Heat of formation + Delta-G solvation = -29.823434 kcal Electronic energy + Delta-G solvation = -29304.166676 eV Core-core repulsion = 25038.256400 eV Total energy + Delta-G solvation = -4265.910276 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.37011 -40.02955 -38.80961 -37.47872 -36.30294 -34.32949 -33.95234 -33.81894 -31.96201 -31.59914 -31.35559 -28.93115 -27.46345 -26.64178 -24.20655 -23.75691 -22.95470 -22.55601 -20.75425 -20.23153 -19.33072 -18.45777 -17.93612 -17.39148 -16.88051 -16.79774 -16.31929 -15.74943 -15.59015 -15.08056 -14.89244 -14.72123 -14.56954 -14.19736 -14.04204 -13.86633 -13.56834 -13.50465 -13.15895 -13.14479 -12.89019 -12.54731 -12.53632 -12.50229 -12.25563 -11.96248 -11.91990 -11.85937 -11.51786 -11.19404 -11.09139 -10.99307 -10.94191 -10.57799 -10.27111 -9.97243 -9.61658 -9.56564 -9.19398 -8.67258 -8.24637 -8.16982 -6.30848 -3.82297 0.94289 1.97210 2.23037 2.40441 3.02026 3.05571 3.08422 3.17471 3.57477 3.72946 4.02569 4.11834 4.13521 4.44135 4.46461 4.54777 4.73873 4.81153 4.81801 4.88695 4.92667 5.00613 5.11596 5.18329 5.21098 5.26822 5.27674 5.36954 5.43299 5.45782 5.53326 5.59213 5.65981 5.75563 5.76677 5.91440 5.96341 6.06584 6.26076 6.94818 7.34531 7.42536 7.57962 8.01583 8.14122 8.16459 8.59487 8.94989 9.42695 9.82077 10.82145 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008424 B = 0.003056 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3323.198977 B = 9159.420170 C =11543.811471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.161 4.161 3 C 0.073 3.927 4 H 0.093 0.907 5 C 0.126 3.874 6 N -0.707 5.707 7 C 0.519 3.481 8 O -0.539 6.539 9 C -0.048 4.048 10 C 0.186 3.814 11 N -0.270 5.270 12 N -0.287 5.287 13 C 0.159 3.841 14 C -0.056 4.056 15 O -0.223 6.223 16 N -0.658 5.658 17 C 0.039 3.961 18 C 0.450 3.550 19 O -0.565 6.565 20 N -0.590 5.590 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.043 3.957 24 N -0.880 5.880 25 Si 0.877 3.123 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.415 0.585 37 H 0.147 0.853 38 H 0.129 0.871 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.355 0.645 43 H 0.049 0.951 44 H 0.088 0.912 45 H 0.370 0.630 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.786 -0.855 24.934 25.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.201 4.201 3 C -0.038 4.038 4 H 0.111 0.889 5 C 0.002 3.998 6 N -0.359 5.359 7 C 0.302 3.698 8 O -0.416 6.416 9 C -0.089 4.089 10 C -0.025 4.025 11 N -0.116 5.116 12 N -0.134 5.134 13 C -0.052 4.052 14 C -0.114 4.114 15 O -0.102 6.102 16 N -0.291 5.291 17 C -0.093 4.093 18 C 0.236 3.764 19 O -0.447 6.447 20 N -0.229 5.229 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.520 5.520 25 Si 0.704 3.296 26 H -0.197 1.197 27 H -0.201 1.201 28 H -0.194 1.194 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.252 0.748 37 H 0.165 0.835 38 H 0.147 0.853 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.125 0.875 42 H 0.176 0.824 43 H 0.067 0.933 44 H 0.106 0.894 45 H 0.202 0.798 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.924 -0.451 23.684 24.978 hybrid contribution -0.564 -1.696 0.649 1.901 sum 7.360 -2.147 24.333 25.512 Atomic orbital electron populations 1.21760 0.95108 1.02078 1.02131 1.22216 0.96901 0.97851 1.03094 1.21934 0.94096 0.93721 0.94013 0.88940 1.21454 0.93058 0.83298 1.01964 1.45670 1.06713 1.10697 1.72807 1.19981 0.82841 0.89857 0.77080 1.90762 1.55940 1.46065 1.48839 1.20117 0.82637 0.97721 1.08428 1.26876 0.97326 0.99492 0.78846 1.74427 0.94719 1.15996 1.26436 1.74412 1.15372 1.17197 1.06460 1.27978 0.83548 0.99627 0.94002 1.20340 0.89842 1.05087 0.96126 1.84728 1.18963 1.69217 1.37330 1.60204 1.18318 1.51117 0.99492 1.21820 1.01091 0.95559 0.90864 1.19657 0.85052 0.87820 0.83857 1.90555 1.43771 1.24272 1.86137 1.42223 1.51355 1.22600 1.06735 1.19409 1.34580 1.07197 0.82158 0.86263 1.25030 0.97766 0.98135 0.95128 1.69618 1.45768 1.38487 0.98166 0.86702 0.80442 0.83833 0.78639 1.19678 1.20078 1.19426 0.92451 0.92460 0.92363 0.91096 0.91250 0.91061 0.91217 0.74846 0.83549 0.85325 0.88346 0.88939 0.87521 0.82431 0.93292 0.89387 0.79752 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.71 37.16 0.36 -0.89 16 2 C -0.16 -1.35 5.17 -26.73 -0.14 -1.48 16 3 C 0.07 0.67 2.70 -67.71 -0.18 0.48 16 4 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 5 C 0.13 1.30 4.70 -4.04 -0.02 1.28 16 6 N -0.71 -7.39 5.39 -60.29 -0.32 -7.71 16 7 C 0.52 6.43 7.82 -10.98 -0.09 6.35 16 8 O -0.54 -8.98 16.03 5.56 0.09 -8.89 16 9 C -0.05 -0.47 6.33 -29.03 -0.18 -0.65 16 10 C 0.19 2.49 6.97 -12.94 -0.09 2.40 16 11 N -0.27 -4.40 12.22 32.55 0.40 -4.00 16 12 N -0.29 -4.34 12.22 32.55 0.40 -3.94 16 13 C 0.16 1.83 8.48 -12.94 -0.11 1.72 16 14 C -0.06 -0.31 10.51 36.01 0.38 0.07 16 15 O -0.22 -2.74 10.87 5.38 0.06 -2.68 16 16 N -0.66 -8.24 5.36 -107.98 -0.58 -8.81 16 17 C 0.04 0.60 5.34 -4.97 -0.03 0.57 16 18 C 0.45 9.78 7.83 -10.99 -0.09 9.69 16 19 O -0.57 -14.36 15.90 5.55 0.09 -14.27 16 20 N -0.59 -13.92 5.09 -10.96 -0.06 -13.97 16 21 C -0.30 -8.58 10.16 -14.93 -0.15 -8.73 16 22 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 23 C 0.04 1.17 5.50 -17.47 -0.10 1.08 16 24 N -0.88 -25.83 13.96 55.50 0.77 -25.06 16 25 Si 0.88 19.74 27.74 -169.99 -4.71 15.02 16 26 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.27 -5.62 6.52 56.52 0.37 -5.25 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.55 6.85 -51.93 -0.36 0.19 16 32 H 0.07 0.67 6.23 -51.93 -0.32 0.34 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.84 6.57 -51.93 -0.34 0.50 16 36 H 0.41 3.81 8.14 -40.82 -0.33 3.48 16 37 H 0.15 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.35 4.60 7.23 -39.29 -0.28 4.32 16 43 H 0.05 0.66 6.49 -51.93 -0.34 0.33 16 44 H 0.09 1.31 6.15 -51.93 -0.32 0.99 16 45 H 0.37 7.82 5.76 -40.82 -0.24 7.58 16 46 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 387.28 15.07 5.84 5.84 Total: -1.00 -38.50 387.28 -4.77 -43.27 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -6.31 Total: 13.33 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: -0.43 Total: 11.88 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: 0.61 Total: -63.50 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: 0.24 Total: -25.84 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.71 Total: 15.02 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.50 -4.77 -43.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481806830.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.448 kcal (2) G-P(sol) polarization free energy of solvation -38.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds