Wall clock time and date at job start Tue Mar 31 2020 22:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47241 * 2 1 4 4 H 1.08994 * 109.46886 * 54.60613 * 3 2 1 5 5 C 1.52995 * 109.47130 * 174.60903 * 3 2 1 6 6 N 1.46506 * 109.46834 * 174.99845 * 5 3 2 7 7 C 1.34775 * 119.99821 * 179.97438 * 6 5 3 8 8 O 1.21279 * 120.00210 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99954 * 179.97438 * 7 6 5 10 10 C 1.50697 * 109.47026 * 180.02562 * 9 7 6 11 11 N 1.30276 * 126.28133 * 90.03165 * 10 9 7 12 12 N 1.28670 * 109.37927 * 179.97438 * 11 10 9 13 13 C 1.30274 * 109.38048 * 359.97438 * 12 11 10 14 14 C 1.50703 * 126.27807 * 180.02562 * 13 12 11 15 15 O 1.34362 * 107.43709 * 359.76220 * 13 12 11 16 16 N 1.46901 * 109.46853 * 294.61081 * 3 2 1 17 17 C 1.46906 * 110.99674 * 300.92051 * 16 3 2 18 18 C 1.50702 * 109.46969 * 185.68018 * 17 16 3 19 19 O 1.21289 * 119.99926 * 359.97438 * 18 17 16 20 20 N 1.34771 * 119.99669 * 180.02562 * 18 17 16 21 21 C 1.37103 * 119.99875 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99503 * 359.97438 * 21 20 18 23 23 C 1.38944 * 120.00219 * 179.97438 * 21 20 18 24 24 N 1.31417 * 120.00139 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00063 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47477 * 89.99934 * 25 23 21 27 27 H 1.48505 * 109.47105 * 210.00213 * 25 23 21 28 28 H 1.48505 * 109.47178 * 329.99665 * 25 23 21 29 29 H 1.09001 * 109.47071 * 178.86795 * 1 2 3 30 30 H 1.09001 * 109.47230 * 298.86251 * 1 2 3 31 31 H 1.08997 * 109.47227 * 58.86001 * 1 2 3 32 32 H 1.08999 * 109.47468 * 239.99684 * 2 1 3 33 33 H 1.09002 * 109.47248 * 119.99843 * 2 1 3 34 34 H 1.09005 * 109.47214 * 294.99805 * 5 3 2 35 35 H 1.08996 * 109.47677 * 55.00055 * 5 3 2 36 36 H 0.96995 * 119.99880 * 359.97438 * 6 5 3 37 37 H 1.08992 * 109.47000 * 300.00406 * 9 7 6 38 38 H 1.09004 * 109.46825 * 60.00248 * 9 7 6 39 39 H 1.08997 * 109.47010 * 89.97576 * 14 13 12 40 40 H 1.09004 * 109.46730 * 209.97694 * 14 13 12 41 41 H 1.09001 * 109.47348 * 329.97220 * 14 13 12 42 42 H 1.00896 * 111.00131 * 64.86814 * 16 3 2 43 43 H 1.09002 * 109.47048 * 65.68091 * 17 16 3 44 44 H 1.09004 * 109.47096 * 305.67600 * 17 16 3 45 45 H 0.97000 * 120.00767 * 359.97438 * 20 18 17 46 46 H 0.96999 * 120.00146 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6000 1.9835 0.8377 5 6 3.5639 1.4446 0.1355 6 7 4.0629 2.8169 0.0158 7 6 5.3850 3.0634 0.1046 8 8 6.1616 2.1491 0.2832 9 6 5.8983 4.4749 -0.0191 10 6 7.3994 4.4770 0.1145 11 7 8.2599 4.3539 -0.8559 12 7 9.4531 4.4003 -0.3768 13 6 9.3945 4.5552 0.9154 14 6 10.5679 4.6575 1.8554 15 8 8.0959 4.6129 1.2554 16 7 1.6594 2.0964 -1.2592 17 6 2.2178 1.3803 -2.4140 18 6 1.9258 2.1538 -3.6739 19 8 1.3124 3.1985 -3.6157 20 7 2.3453 1.6841 -4.8654 21 6 2.0792 2.3875 -6.0118 22 1 1.5330 3.3178 -5.9599 23 6 2.5121 1.9036 -7.2401 24 7 2.2575 2.5781 -8.3389 25 14 3.4562 0.2942 -7.3299 26 1 2.5021 -0.8304 -7.5031 27 1 4.3911 0.3324 -8.4831 28 1 4.2262 0.1014 -6.0748 29 1 -0.3633 -1.0275 -0.0203 30 1 -0.3634 0.4961 0.9000 31 1 -0.3633 0.5314 -0.8796 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8428 1.0402 1.1086 35 1 3.9997 0.8297 -0.6519 36 1 3.4418 3.5480 -0.1274 37 1 5.6199 4.8786 -0.9925 38 1 5.4623 5.0903 0.7678 39 1 10.8598 5.7024 1.9598 40 1 10.2879 4.2592 2.8307 41 1 11.4047 4.0846 1.4557 42 1 0.6567 2.1787 -1.3352 43 1 1.7650 0.3911 -2.4817 44 1 3.2962 1.2787 -2.2917 45 1 2.8356 0.8484 -4.9121 46 1 2.5594 2.2401 -9.1965 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481806830.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:49 Heat of formation + Delta-G solvation = -66.864903 kcal Electronic energy + Delta-G solvation = -29305.772915 eV Core-core repulsion = 25038.256400 eV Total energy + Delta-G solvation = -4267.516514 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.31707 -41.01903 -40.31025 -38.70880 -37.28022 -35.99462 -35.21259 -34.65636 -33.74481 -32.84303 -32.06400 -29.81254 -28.52572 -27.83985 -25.88308 -24.65985 -23.79443 -23.42435 -21.77911 -21.41500 -20.89055 -20.15585 -18.87516 -18.31750 -18.25415 -17.75112 -17.31225 -17.06412 -16.69420 -16.52508 -15.99730 -15.70344 -15.63127 -15.38357 -15.14666 -14.86396 -14.75095 -14.53114 -14.25927 -14.07225 -13.98117 -13.69030 -13.56744 -13.50795 -13.33727 -13.18316 -12.97797 -12.93639 -12.70875 -12.43511 -12.29746 -12.03072 -12.01398 -11.82130 -11.66127 -11.50562 -11.27627 -10.55994 -10.41970 -10.23737 -10.09731 -9.34346 -8.41824 -6.01230 0.04689 1.13325 1.26679 1.28576 1.31742 1.40600 1.47363 1.97075 2.17267 2.20575 2.73557 2.79484 3.15280 3.37838 3.42859 3.65686 3.72928 3.82430 4.01029 4.09522 4.17262 4.18225 4.33310 4.35122 4.40049 4.42909 4.48789 4.54417 4.55929 4.59477 4.70469 4.76589 4.81917 4.94955 5.03214 5.14403 5.27094 5.39333 5.40432 5.52566 5.90532 6.02518 6.39653 6.48745 6.59657 6.88941 7.13399 7.19563 7.41059 7.96760 8.75658 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008424 B = 0.003056 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3323.198977 B = 9159.420170 C =11543.811471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.157 4.157 3 C 0.085 3.915 4 H 0.117 0.883 5 C 0.124 3.876 6 N -0.696 5.696 7 C 0.517 3.483 8 O -0.586 6.586 9 C -0.045 4.045 10 C 0.184 3.816 11 N -0.319 5.319 12 N -0.335 5.335 13 C 0.171 3.829 14 C -0.056 4.056 15 O -0.225 6.225 16 N -0.666 5.666 17 C 0.057 3.943 18 C 0.453 3.547 19 O -0.605 6.605 20 N -0.597 5.597 21 C -0.322 4.322 22 H 0.061 0.939 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.957 3.043 26 H -0.254 1.254 27 H -0.277 1.277 28 H -0.240 1.240 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.422 0.578 37 H 0.155 0.845 38 H 0.174 0.826 39 H 0.124 0.876 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.354 0.646 43 H 0.076 0.924 44 H 0.098 0.902 45 H 0.386 0.614 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.442 -2.611 28.063 29.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.197 4.197 3 C -0.025 4.025 4 H 0.134 0.866 5 C 0.000 4.000 6 N -0.348 5.348 7 C 0.302 3.698 8 O -0.467 6.467 9 C -0.085 4.085 10 C -0.029 4.029 11 N -0.164 5.164 12 N -0.181 5.181 13 C -0.040 4.040 14 C -0.114 4.114 15 O -0.105 6.105 16 N -0.299 5.299 17 C -0.075 4.075 18 C 0.241 3.759 19 O -0.489 6.489 20 N -0.238 5.238 21 C -0.452 4.452 22 H 0.079 0.921 23 C -0.212 4.212 24 N -0.574 5.574 25 Si 0.778 3.222 26 H -0.178 1.178 27 H -0.202 1.202 28 H -0.164 1.164 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.261 0.739 37 H 0.173 0.827 38 H 0.192 0.808 39 H 0.143 0.857 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.175 0.825 43 H 0.093 0.907 44 H 0.116 0.884 45 H 0.221 0.779 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.557 -2.203 26.836 28.253 hybrid contribution -0.836 -1.029 -0.185 1.339 sum 7.721 -3.232 26.651 27.934 Atomic orbital electron populations 1.21753 0.94884 1.02305 1.02028 1.22184 0.96959 0.96977 1.03572 1.21974 0.93301 0.94556 0.92709 0.86554 1.21530 0.93568 0.82897 1.02029 1.45660 1.06288 1.11189 1.71643 1.20353 0.82955 0.90301 0.76180 1.90740 1.57095 1.47627 1.51269 1.20339 0.80748 0.96853 1.10601 1.27433 0.98395 0.98386 0.78662 1.74316 0.95772 1.17966 1.28356 1.74309 1.15431 1.19913 1.08444 1.29142 0.84418 0.96545 0.93883 1.20746 0.87729 1.07097 0.95780 1.84751 1.19362 1.69394 1.36964 1.60165 1.18228 1.51682 0.99831 1.21626 1.02013 0.95560 0.88316 1.20921 0.82549 0.87301 0.85169 1.90536 1.44949 1.26329 1.87059 1.42110 1.52487 1.23128 1.06094 1.19001 1.35279 1.06260 0.84634 0.92120 1.26004 0.98530 1.02671 0.93971 1.69789 1.47430 1.41107 0.99087 0.85475 0.79001 0.78067 0.79707 1.17839 1.20179 1.16359 0.92047 0.91217 0.93890 0.91975 0.89466 0.89878 0.92902 0.73948 0.82712 0.80839 0.85738 0.86669 0.86555 0.82534 0.90675 0.88403 0.77938 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.71 71.98 0.70 -1.33 16 2 C -0.16 -2.10 5.17 30.60 0.16 -1.94 16 3 C 0.08 1.27 2.70 44.92 0.12 1.39 16 4 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 5 C 0.12 2.23 4.70 86.38 0.41 2.63 16 6 N -0.70 -13.07 5.39 -463.05 -2.50 -15.56 16 7 C 0.52 12.14 7.82 87.66 0.69 12.83 16 8 O -0.59 -19.25 16.03 -3.03 -0.05 -19.30 16 9 C -0.05 -0.81 6.33 29.10 0.18 -0.63 16 10 C 0.18 4.85 6.97 88.34 0.62 5.46 16 11 N -0.32 -10.64 12.22 -165.50 -2.02 -12.66 16 12 N -0.33 -10.29 12.22 -165.50 -2.02 -12.32 16 13 C 0.17 3.80 8.48 88.34 0.75 4.55 16 14 C -0.06 -0.48 10.51 71.24 0.75 0.26 16 15 O -0.22 -5.30 10.87 -3.65 -0.04 -5.34 16 16 N -0.67 -15.21 5.36 -495.55 -2.65 -17.87 16 17 C 0.06 1.63 5.34 85.56 0.46 2.08 16 18 C 0.45 19.58 7.83 87.66 0.69 20.27 16 19 O -0.60 -31.44 15.90 -3.06 -0.05 -31.49 16 20 N -0.60 -28.13 5.09 -306.99 -1.56 -29.69 16 21 C -0.32 -18.85 10.16 84.04 0.85 -18.00 16 22 H 0.06 4.18 7.39 -2.91 -0.02 4.16 16 23 C -0.01 -0.73 5.50 84.92 0.47 -0.27 16 24 N -0.93 -56.78 13.96 21.66 0.30 -56.48 16 25 Si 0.96 40.26 27.74 68.60 1.90 42.16 16 26 H -0.25 -9.99 7.11 99.48 0.71 -9.29 16 27 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 28 H -0.24 -8.88 6.52 99.48 0.65 -8.23 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.04 0.71 6.85 -2.39 -0.02 0.69 16 32 H 0.06 0.96 6.23 -2.39 -0.01 0.94 16 33 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.05 1.16 6.57 -2.39 -0.02 1.15 16 36 H 0.42 6.72 8.14 -92.71 -0.75 5.97 16 37 H 0.16 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.17 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.11 0.51 8.14 -2.38 -0.02 0.49 16 41 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.35 8.53 7.23 -89.70 -0.65 7.88 16 43 H 0.08 1.81 6.49 -2.39 -0.02 1.79 16 44 H 0.10 2.68 6.15 -2.39 -0.01 2.67 16 45 H 0.39 15.59 5.76 -92.71 -0.53 15.06 16 46 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -91.14 387.28 -2.80 -93.93 By element: Atomic # 1 Polarization: 38.26 SS G_CDS: -0.94 Total: 37.32 kcal Atomic # 6 Polarization: 20.48 SS G_CDS: 6.83 Total: 27.31 kcal Atomic # 7 Polarization: -134.13 SS G_CDS: -10.46 Total: -144.59 kcal Atomic # 8 Polarization: -56.00 SS G_CDS: -0.14 Total: -56.14 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 1.90 Total: 42.16 kcal Total: -91.14 -2.80 -93.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481806830.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.070 kcal (2) G-P(sol) polarization free energy of solvation -91.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds