Wall clock time and date at job start Tue Mar 31 2020 22:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47172 * 2 1 4 4 H 1.08999 * 109.47565 * 302.96663 * 3 2 1 5 5 C 1.53001 * 109.47586 * 182.96763 * 3 2 1 6 6 N 1.46499 * 109.47342 * 185.00315 * 5 3 2 7 7 C 1.34779 * 119.99968 * 179.97438 * 6 5 3 8 8 O 1.21282 * 120.00017 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99954 * 179.97438 * 7 6 5 10 10 C 1.50699 * 109.46773 * 180.02562 * 9 7 6 11 11 N 1.30272 * 126.28399 * 90.02869 * 10 9 7 12 12 N 1.28659 * 109.38698 * 179.97438 * 11 10 9 13 13 C 1.30282 * 109.38008 * 359.97438 * 12 11 10 14 14 C 1.50701 * 126.28251 * 180.02562 * 13 12 11 15 15 O 1.34360 * 107.43024 * 359.76358 * 13 12 11 16 16 N 1.46906 * 109.46986 * 62.96326 * 3 2 1 17 17 C 1.46905 * 110.99476 * 65.52574 * 16 3 2 18 18 C 1.50707 * 109.46752 * 182.18230 * 17 16 3 19 19 O 1.21297 * 119.99789 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99696 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99890 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99584 * 359.97438 * 21 20 18 23 23 C 1.38947 * 119.99959 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00163 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99665 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47180 * 90.00047 * 25 23 21 27 27 H 1.48503 * 109.47052 * 209.99253 * 25 23 21 28 28 H 1.48494 * 109.47603 * 329.99747 * 25 23 21 29 29 H 1.08997 * 109.47187 * 294.77619 * 1 2 3 30 30 H 1.09003 * 109.47043 * 54.78072 * 1 2 3 31 31 H 1.08998 * 109.46906 * 174.76888 * 1 2 3 32 32 H 1.09000 * 109.47075 * 240.00414 * 2 1 3 33 33 H 1.08997 * 109.47136 * 120.00178 * 2 1 3 34 34 H 1.09006 * 109.46748 * 304.99856 * 5 3 2 35 35 H 1.08992 * 109.47141 * 64.99763 * 5 3 2 36 36 H 0.96999 * 119.99880 * 359.97438 * 6 5 3 37 37 H 1.08996 * 109.47067 * 299.99934 * 9 7 6 38 38 H 1.08996 * 109.46652 * 60.00540 * 9 7 6 39 39 H 1.08999 * 109.46672 * 89.98272 * 14 13 12 40 40 H 1.09000 * 109.47030 * 209.97952 * 14 13 12 41 41 H 1.08998 * 109.47158 * 329.97951 * 14 13 12 42 42 H 1.00899 * 111.00181 * 189.47549 * 16 3 2 43 43 H 1.09003 * 109.47100 * 302.17716 * 17 16 3 44 44 H 1.08998 * 109.47062 * 62.18219 * 17 16 3 45 45 H 0.96994 * 120.00349 * 359.97438 * 20 18 17 46 46 H 0.97000 * 119.99935 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6339 1.9715 -0.8622 5 6 3.5682 1.4432 -0.0747 6 7 4.0623 2.8171 0.0455 7 6 5.3870 3.0626 0.0070 8 8 6.1700 2.1460 -0.1266 9 6 5.8953 4.4760 0.1301 10 6 7.4005 4.4765 0.0567 11 7 8.1196 4.5865 -1.0240 12 7 9.3673 4.5485 -0.7125 13 6 9.4868 4.4135 0.5778 14 6 10.7783 4.3278 1.3496 15 8 8.2473 4.3705 1.0945 16 7 1.6096 2.1140 1.2337 17 6 2.2440 1.5076 2.4118 18 6 1.7387 2.1857 3.6592 19 8 0.9301 3.0859 3.5750 20 7 2.1853 1.7919 4.8683 21 6 1.7253 2.4084 6.0032 22 1 1.0053 3.2100 5.9281 23 6 2.1861 2.0028 7.2496 24 7 3.0625 1.0278 7.3408 25 14 1.5598 2.8433 8.7958 26 1 0.3506 2.1360 9.2885 27 1 2.6144 2.8072 9.8406 28 1 1.2165 4.2548 8.4875 29 1 -0.3633 0.4307 0.9330 30 1 -0.3633 0.5927 -0.8396 31 1 -0.3633 -1.0234 -0.0937 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.9719 0.8395 0.7382 35 1 3.8854 1.0252 -1.0300 36 1 3.4361 3.5501 0.1528 37 1 5.4920 5.0792 -0.6832 38 1 5.5776 4.8944 1.0851 39 1 11.0939 5.3293 1.6420 40 1 10.6289 3.7191 2.2414 41 1 11.5462 3.8730 0.7238 42 1 1.7982 3.1043 1.1910 43 1 1.9988 0.4462 2.4506 44 1 3.3252 1.6286 2.3450 45 1 2.8316 1.0718 4.9357 46 1 3.3839 0.7444 8.2110 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481806831.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:53 Heat of formation + Delta-G solvation = -35.962907 kcal Electronic energy + Delta-G solvation = -29307.002578 eV Core-core repulsion = 25040.826075 eV Total energy + Delta-G solvation = -4266.176503 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.42194 -40.20876 -38.67263 -37.35719 -36.34965 -34.27917 -33.96264 -33.85783 -32.03270 -31.38332 -31.22732 -28.78733 -27.45612 -26.47749 -24.35739 -23.77037 -22.95409 -22.58448 -20.91474 -20.26104 -19.15239 -18.12053 -17.96782 -17.46126 -17.06336 -16.82512 -16.37269 -15.91711 -15.45889 -15.02107 -14.77628 -14.60771 -14.35255 -14.23921 -14.10315 -13.75773 -13.54276 -13.50598 -13.42919 -13.12253 -12.88097 -12.59099 -12.54965 -12.21684 -12.04968 -11.96487 -11.71620 -11.51612 -11.35508 -11.18625 -11.07872 -10.92451 -10.64060 -10.43414 -10.36950 -10.26032 -9.67302 -9.55278 -9.39386 -8.56152 -8.16412 -8.00971 -6.45893 -3.87130 0.89314 1.93606 2.14403 2.26754 2.86013 3.14240 3.23359 3.28506 3.50071 3.85061 4.02591 4.06562 4.24495 4.33839 4.47562 4.57110 4.71714 4.80247 4.91863 4.95808 5.05302 5.09627 5.13248 5.21040 5.25451 5.29629 5.31658 5.46191 5.51786 5.53743 5.69629 5.75120 5.84160 5.92480 6.03694 6.08937 6.17926 6.25525 6.50707 7.04722 7.08520 7.47501 7.50748 7.83236 8.01262 8.08546 8.56004 9.13228 9.49479 10.00336 10.71646 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007627 B = 0.003113 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3670.421231 B = 8992.558999 C =11951.987994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C 0.077 3.923 4 H 0.091 0.909 5 C 0.080 3.920 6 N -0.722 5.722 7 C 0.521 3.479 8 O -0.528 6.528 9 C -0.049 4.049 10 C 0.184 3.816 11 N -0.275 5.275 12 N -0.290 5.290 13 C 0.166 3.834 14 C -0.059 4.059 15 O -0.217 6.217 16 N -0.652 5.652 17 C 0.043 3.957 18 C 0.440 3.560 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.900 5.900 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.071 0.929 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.402 0.598 37 H 0.143 0.857 38 H 0.133 0.867 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.344 0.656 43 H 0.089 0.911 44 H 0.046 0.954 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.066 3.381 -14.385 16.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.034 4.034 4 H 0.109 0.891 5 C -0.045 4.045 6 N -0.375 5.375 7 C 0.305 3.695 8 O -0.404 6.404 9 C -0.090 4.090 10 C -0.027 4.027 11 N -0.121 5.121 12 N -0.138 5.138 13 C -0.044 4.044 14 C -0.117 4.117 15 O -0.096 6.096 16 N -0.284 5.284 17 C -0.089 4.089 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.238 0.762 37 H 0.161 0.839 38 H 0.151 0.849 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.164 0.836 43 H 0.107 0.893 44 H 0.064 0.936 45 H 0.225 0.775 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.917 3.000 -15.530 17.687 hybrid contribution 0.468 0.380 2.117 2.202 sum 8.385 3.380 -13.412 16.175 Atomic orbital electron populations 1.21616 0.94516 1.00639 1.03118 1.21504 0.97431 0.94201 1.02048 1.22000 0.90056 0.97388 0.93973 0.89133 1.22268 0.96714 0.82547 1.03017 1.45819 1.06645 1.10355 1.74711 1.19985 0.82684 0.89996 0.76793 1.90784 1.55458 1.45979 1.48132 1.20107 0.82817 0.97620 1.08455 1.26775 0.95443 0.99795 0.80733 1.74331 0.96837 1.16800 1.24166 1.74373 1.10639 1.17848 1.10943 1.28018 0.86628 0.98948 0.90848 1.20381 0.86468 1.05161 0.99654 1.84779 1.16912 1.68966 1.38978 1.60206 1.60911 1.07365 0.99914 1.21788 0.96505 1.00125 0.90516 1.19785 0.86224 0.87125 0.84303 1.90523 1.36766 1.33043 1.86506 1.41872 1.39728 1.33654 1.04658 1.19688 1.23509 1.16679 0.83110 0.87919 1.25265 0.96516 0.96707 0.99400 1.69611 1.30648 1.27945 1.25948 0.85867 0.78241 0.79660 0.80577 1.20362 1.20934 1.19416 0.91001 0.93154 0.93505 0.91756 0.91451 0.90622 0.90851 0.76226 0.83927 0.84917 0.88224 0.88640 0.87477 0.83575 0.89277 0.93591 0.77523 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.71 37.16 0.36 -1.16 16 2 C -0.11 -1.14 5.29 -26.73 -0.14 -1.28 16 3 C 0.08 0.77 2.73 -67.71 -0.18 0.59 16 4 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 5 C 0.08 0.84 4.47 -4.04 -0.02 0.82 16 6 N -0.72 -6.98 5.31 -60.29 -0.32 -7.30 16 7 C 0.52 6.18 7.82 -10.98 -0.09 6.09 16 8 O -0.53 -8.70 16.03 5.56 0.09 -8.61 16 9 C -0.05 -0.44 6.33 -29.03 -0.18 -0.62 16 10 C 0.18 2.37 6.97 -12.94 -0.09 2.28 16 11 N -0.27 -4.05 12.22 32.55 0.40 -3.65 16 12 N -0.29 -4.14 12.22 32.55 0.40 -3.74 16 13 C 0.17 1.95 8.48 -12.94 -0.11 1.84 16 14 C -0.06 -0.36 10.51 36.01 0.38 0.01 16 15 O -0.22 -2.85 10.87 5.39 0.06 -2.80 16 16 N -0.65 -8.71 5.38 -107.98 -0.58 -9.29 16 17 C 0.04 0.69 5.32 -4.97 -0.03 0.67 16 18 C 0.44 9.79 7.82 -10.98 -0.09 9.71 16 19 O -0.58 -14.90 15.83 5.54 0.09 -14.81 16 20 N -0.56 -13.82 5.29 -10.96 -0.06 -13.87 16 21 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 16 22 H 0.10 2.93 7.16 -52.48 -0.38 2.55 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.17 13.05 55.50 0.72 -23.44 16 25 Si 0.93 20.66 29.55 -169.99 -5.02 15.63 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 29 H 0.07 0.96 7.85 -51.93 -0.41 0.56 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.74 6.36 -51.93 -0.33 0.41 16 34 H 0.08 0.94 6.69 -51.93 -0.35 0.59 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.40 2.96 7.23 -40.82 -0.30 2.67 16 37 H 0.14 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.13 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.34 4.48 7.24 -39.29 -0.28 4.20 16 43 H 0.09 1.37 6.30 -51.93 -0.33 1.05 16 44 H 0.05 0.71 6.41 -51.93 -0.33 0.37 16 45 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 46 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 390.57 15.07 5.89 5.89 Total: -1.00 -36.85 390.57 -5.15 -42.01 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -6.38 Total: 12.86 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -0.43 Total: 11.13 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: 0.56 Total: -61.30 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: 0.24 Total: -26.22 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.85 -5.15 -42.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481806831.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.042 kcal (2) G-P(sol) polarization free energy of solvation -36.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds