Wall clock time and date at job start Tue Mar 31 2020 22:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47172 * 2 1 4 4 H 1.08999 * 109.47565 * 302.96663 * 3 2 1 5 5 C 1.53001 * 109.47586 * 182.96763 * 3 2 1 6 6 N 1.46499 * 109.47342 * 185.00315 * 5 3 2 7 7 C 1.34779 * 119.99968 * 179.97438 * 6 5 3 8 8 O 1.21282 * 120.00017 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99954 * 179.97438 * 7 6 5 10 10 C 1.50699 * 109.46773 * 180.02562 * 9 7 6 11 11 N 1.30272 * 126.28399 * 90.02869 * 10 9 7 12 12 N 1.28659 * 109.38698 * 179.97438 * 11 10 9 13 13 C 1.30282 * 109.38008 * 359.97438 * 12 11 10 14 14 C 1.50701 * 126.28251 * 180.02562 * 13 12 11 15 15 O 1.34360 * 107.43024 * 359.76358 * 13 12 11 16 16 N 1.46906 * 109.46986 * 62.96326 * 3 2 1 17 17 C 1.46905 * 110.99476 * 65.52574 * 16 3 2 18 18 C 1.50707 * 109.46752 * 182.18230 * 17 16 3 19 19 O 1.21297 * 119.99789 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99696 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99890 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99584 * 359.97438 * 21 20 18 23 23 C 1.38947 * 119.99959 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00163 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99665 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47180 * 90.00047 * 25 23 21 27 27 H 1.48503 * 109.47052 * 209.99253 * 25 23 21 28 28 H 1.48494 * 109.47603 * 329.99747 * 25 23 21 29 29 H 1.08997 * 109.47187 * 294.77619 * 1 2 3 30 30 H 1.09003 * 109.47043 * 54.78072 * 1 2 3 31 31 H 1.08998 * 109.46906 * 174.76888 * 1 2 3 32 32 H 1.09000 * 109.47075 * 240.00414 * 2 1 3 33 33 H 1.08997 * 109.47136 * 120.00178 * 2 1 3 34 34 H 1.09006 * 109.46748 * 304.99856 * 5 3 2 35 35 H 1.08992 * 109.47141 * 64.99763 * 5 3 2 36 36 H 0.96999 * 119.99880 * 359.97438 * 6 5 3 37 37 H 1.08996 * 109.47067 * 299.99934 * 9 7 6 38 38 H 1.08996 * 109.46652 * 60.00540 * 9 7 6 39 39 H 1.08999 * 109.46672 * 89.98272 * 14 13 12 40 40 H 1.09000 * 109.47030 * 209.97952 * 14 13 12 41 41 H 1.08998 * 109.47158 * 329.97951 * 14 13 12 42 42 H 1.00899 * 111.00181 * 189.47549 * 16 3 2 43 43 H 1.09003 * 109.47100 * 302.17716 * 17 16 3 44 44 H 1.08998 * 109.47062 * 62.18219 * 17 16 3 45 45 H 0.96994 * 120.00349 * 359.97438 * 20 18 17 46 46 H 0.97000 * 119.99935 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6339 1.9715 -0.8622 5 6 3.5682 1.4432 -0.0747 6 7 4.0623 2.8171 0.0455 7 6 5.3870 3.0626 0.0070 8 8 6.1700 2.1460 -0.1266 9 6 5.8953 4.4760 0.1301 10 6 7.4005 4.4765 0.0567 11 7 8.1196 4.5865 -1.0240 12 7 9.3673 4.5485 -0.7125 13 6 9.4868 4.4135 0.5778 14 6 10.7783 4.3278 1.3496 15 8 8.2473 4.3705 1.0945 16 7 1.6096 2.1140 1.2337 17 6 2.2440 1.5076 2.4118 18 6 1.7387 2.1857 3.6592 19 8 0.9301 3.0859 3.5750 20 7 2.1853 1.7919 4.8683 21 6 1.7253 2.4084 6.0032 22 1 1.0053 3.2100 5.9281 23 6 2.1861 2.0028 7.2496 24 7 3.0625 1.0278 7.3408 25 14 1.5598 2.8433 8.7958 26 1 0.3506 2.1360 9.2885 27 1 2.6144 2.8072 9.8406 28 1 1.2165 4.2548 8.4875 29 1 -0.3633 0.4307 0.9330 30 1 -0.3633 0.5927 -0.8396 31 1 -0.3633 -1.0234 -0.0937 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.9719 0.8395 0.7382 35 1 3.8854 1.0252 -1.0300 36 1 3.4361 3.5501 0.1528 37 1 5.4920 5.0792 -0.6832 38 1 5.5776 4.8944 1.0851 39 1 11.0939 5.3293 1.6420 40 1 10.6289 3.7191 2.2414 41 1 11.5462 3.8730 0.7238 42 1 1.7982 3.1043 1.1910 43 1 1.9988 0.4462 2.4506 44 1 3.3252 1.6286 2.3450 45 1 2.8316 1.0718 4.9357 46 1 3.3839 0.7444 8.2110 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481806831.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:52 Heat of formation + Delta-G solvation = -70.104734 kcal Electronic energy + Delta-G solvation = -29308.483079 eV Core-core repulsion = 25040.826075 eV Total energy + Delta-G solvation = -4267.657004 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.35214 -41.18011 -40.19096 -38.65935 -37.31585 -35.95693 -35.17094 -34.68359 -33.33677 -32.98815 -32.08509 -29.76018 -28.46686 -27.75135 -26.05340 -24.71360 -23.82519 -23.46715 -21.91973 -21.47155 -20.55436 -19.85316 -19.03402 -18.40020 -18.31836 -17.85660 -17.30784 -17.02228 -16.85371 -16.33106 -15.93516 -15.86429 -15.57853 -15.49729 -15.11901 -15.04681 -14.62947 -14.48977 -14.05022 -14.00930 -13.74740 -13.63207 -13.54843 -13.49179 -13.41472 -13.10506 -13.02938 -12.87491 -12.64846 -12.40364 -12.28997 -12.12019 -12.10375 -11.79952 -11.53585 -11.47850 -11.34346 -10.58016 -10.34017 -10.27826 -10.00515 -9.35002 -8.45782 -5.94497 0.00235 1.11315 1.22646 1.37130 1.38311 1.42347 1.54670 2.02295 2.06987 2.29307 2.72707 2.93407 3.21785 3.30585 3.51353 3.55848 3.71969 3.77116 4.02389 4.05873 4.20708 4.29378 4.31840 4.33297 4.39111 4.46171 4.51146 4.52668 4.59027 4.66934 4.69400 4.70199 4.95227 4.99376 5.00157 5.19537 5.24797 5.39565 5.41765 5.59439 5.87962 6.08443 6.26534 6.43790 6.60118 6.98773 7.13558 7.13880 7.57506 8.11884 8.71589 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007627 B = 0.003113 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3670.421231 B = 8992.558999 C =11951.987994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.115 4.115 3 C 0.088 3.912 4 H 0.116 0.884 5 C 0.084 3.916 6 N -0.709 5.709 7 C 0.520 3.480 8 O -0.580 6.580 9 C -0.045 4.045 10 C 0.178 3.822 11 N -0.305 5.305 12 N -0.327 5.327 13 C 0.170 3.830 14 C -0.059 4.059 15 O -0.232 6.232 16 N -0.659 5.659 17 C 0.063 3.937 18 C 0.441 3.559 19 O -0.617 6.617 20 N -0.576 5.576 21 C -0.330 4.330 22 H 0.082 0.918 23 C -0.014 4.014 24 N -0.922 5.922 25 Si 0.991 3.009 26 H -0.273 1.273 27 H -0.273 1.273 28 H -0.270 1.270 29 H 0.040 0.960 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.416 0.584 37 H 0.178 0.822 38 H 0.159 0.841 39 H 0.125 0.875 40 H 0.108 0.892 41 H 0.120 0.880 42 H 0.348 0.652 43 H 0.098 0.902 44 H 0.057 0.943 45 H 0.393 0.607 46 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.019 3.838 -14.676 17.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C -0.022 4.022 4 H 0.134 0.866 5 C -0.042 4.042 6 N -0.362 5.362 7 C 0.305 3.695 8 O -0.460 6.460 9 C -0.085 4.085 10 C -0.035 4.035 11 N -0.151 5.151 12 N -0.174 5.174 13 C -0.040 4.040 14 C -0.116 4.116 15 O -0.112 6.112 16 N -0.292 5.292 17 C -0.069 4.069 18 C 0.229 3.771 19 O -0.503 6.503 20 N -0.213 5.213 21 C -0.460 4.460 22 H 0.100 0.900 23 C -0.214 4.214 24 N -0.564 5.564 25 Si 0.815 3.185 26 H -0.198 1.198 27 H -0.198 1.198 28 H -0.194 1.194 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.254 0.746 37 H 0.196 0.804 38 H 0.177 0.823 39 H 0.143 0.857 40 H 0.126 0.874 41 H 0.139 0.861 42 H 0.168 0.832 43 H 0.116 0.884 44 H 0.075 0.925 45 H 0.227 0.773 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.853 3.469 -15.854 18.029 hybrid contribution 0.464 0.219 2.143 2.203 sum 8.316 3.688 -13.712 16.455 Atomic orbital electron populations 1.21565 0.94945 1.01121 1.01897 1.21541 0.96934 0.94189 1.02630 1.22044 0.89714 0.97493 0.92963 0.86605 1.22188 0.96654 0.82709 1.02601 1.45732 1.06351 1.10620 1.73536 1.20437 0.82756 0.90570 0.75691 1.90764 1.56771 1.47734 1.50744 1.20370 0.80583 0.96253 1.11290 1.27461 0.96770 0.98909 0.80311 1.74232 0.97408 1.18117 1.25346 1.74291 1.10785 1.19919 1.12415 1.29081 0.87600 0.96676 0.90666 1.20740 0.84154 1.07046 0.99708 1.84800 1.17600 1.69359 1.39431 1.60181 1.61090 1.07752 1.00155 1.21535 0.96859 0.99876 0.88636 1.20814 0.84795 0.86196 0.85337 1.90494 1.38030 1.34496 1.87260 1.41966 1.40301 1.34004 1.05032 1.19663 1.24298 1.17245 0.84768 0.90047 1.26029 0.96428 0.97128 1.01771 1.69680 1.31176 1.28651 1.26843 0.84949 0.77983 0.78510 0.77054 1.19827 1.19799 1.19448 0.94050 0.91978 0.92722 0.89466 0.92642 0.92535 0.90254 0.74611 0.80441 0.82317 0.85717 0.87386 0.86131 0.83214 0.88355 0.92481 0.77346 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.71 71.98 0.70 -2.02 16 2 C -0.11 -2.06 5.29 30.59 0.16 -1.89 16 3 C 0.09 1.55 2.73 44.91 0.12 1.67 16 4 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 5 C 0.08 1.60 4.47 86.38 0.39 1.99 16 6 N -0.71 -12.31 5.31 -463.05 -2.46 -14.77 16 7 C 0.52 11.69 7.82 87.66 0.69 12.38 16 8 O -0.58 -19.12 16.03 -3.04 -0.05 -19.17 16 9 C -0.04 -0.72 6.33 29.10 0.18 -0.54 16 10 C 0.18 4.50 6.97 88.34 0.62 5.12 16 11 N -0.31 -9.06 12.22 -165.50 -2.02 -11.08 16 12 N -0.33 -9.42 12.22 -165.50 -2.02 -11.45 16 13 C 0.17 3.93 8.48 88.34 0.75 4.68 16 14 C -0.06 -0.64 10.51 71.24 0.75 0.11 16 15 O -0.23 -6.02 10.87 -3.62 -0.04 -6.06 16 16 N -0.66 -16.55 5.38 -495.54 -2.66 -19.21 16 17 C 0.06 1.98 5.32 85.56 0.46 2.43 16 18 C 0.44 19.70 7.82 87.66 0.69 20.39 16 19 O -0.62 -31.70 15.83 -3.08 -0.05 -31.75 16 20 N -0.58 -28.69 5.29 -306.97 -1.62 -30.31 16 21 C -0.33 -18.25 9.68 84.04 0.81 -17.44 16 22 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 23 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 24 N -0.92 -49.44 13.05 21.66 0.28 -49.15 16 25 Si 0.99 42.14 29.55 68.60 2.03 44.16 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 27 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 28 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 29 H 0.04 1.07 7.85 -2.39 -0.02 1.05 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.05 1.14 6.36 -2.39 -0.02 1.12 16 34 H 0.06 1.33 6.69 -2.38 -0.02 1.32 16 35 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.42 5.02 7.23 -92.71 -0.67 4.35 16 37 H 0.18 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.16 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.12 0.75 8.14 -2.39 -0.02 0.74 16 40 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.35 8.38 7.24 -89.69 -0.65 7.73 16 43 H 0.10 2.95 6.30 -2.39 -0.02 2.94 16 44 H 0.06 1.69 6.41 -2.39 -0.02 1.68 16 45 H 0.39 19.03 7.90 -92.71 -0.73 18.30 16 46 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -82.58 390.57 -2.84 -85.42 By element: Atomic # 1 Polarization: 37.76 SS G_CDS: -1.00 Total: 36.77 kcal Atomic # 6 Polarization: 19.83 SS G_CDS: 6.77 Total: 26.61 kcal Atomic # 7 Polarization: -125.47 SS G_CDS: -10.51 Total: -135.98 kcal Atomic # 8 Polarization: -56.84 SS G_CDS: -0.14 Total: -56.98 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -82.58 -2.84 -85.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481806831.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.320 kcal (2) G-P(sol) polarization free energy of solvation -82.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds