Wall clock time and date at job start Tue Mar 31 2020 22:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.46959 * 2 1 4 4 H 1.08994 * 109.47590 * 55.00016 * 3 2 1 5 5 C 1.52999 * 109.47095 * 175.00360 * 3 2 1 6 6 N 1.46498 * 109.47338 * 174.99602 * 5 3 2 7 7 C 1.34777 * 120.00133 * 179.97438 * 6 5 3 8 8 O 1.21570 * 119.99798 * 0.02562 * 7 6 5 9 9 C 1.47693 * 120.00020 * 180.02562 * 7 6 5 10 10 C 1.39468 * 120.20441 * 6.53165 * 9 7 6 11 11 C 1.37979 * 119.96864 * 180.02562 * 10 9 7 12 12 C 1.38489 * 120.39542 * 359.97438 * 11 10 9 13 13 C 1.38079 * 120.42367 * 0.02562 * 12 11 10 14 14 C 1.39173 * 120.01464 * 359.71556 * 13 12 11 15 15 C 1.48225 * 120.19727 * 180.30037 * 14 13 12 16 16 C 1.39834 * 120.91294 * 57.78701 * 15 14 13 17 17 C 1.37997 * 119.00957 * 179.77989 * 16 15 14 18 18 N 1.31910 * 120.88925 * 0.51021 * 17 16 15 19 19 C 1.31906 * 122.02366 * 359.74155 * 18 17 16 20 20 C 1.37996 * 120.89383 * 359.97438 * 19 18 17 21 21 N 1.46500 * 109.46864 * 295.00049 * 3 2 1 22 22 C 1.36938 * 120.00179 * 85.00359 * 21 3 2 23 23 H 1.08004 * 119.99868 * 359.97438 * 22 21 3 24 24 C 1.38811 * 119.99965 * 179.72439 * 22 21 3 25 25 N 1.31612 * 120.00503 * 0.26788 * 24 22 21 26 26 Si 1.86805 * 119.99693 * 180.27508 * 24 22 21 27 27 H 1.48502 * 109.47005 * 90.00022 * 26 24 22 28 28 H 1.48499 * 109.47094 * 209.99515 * 26 24 22 29 29 H 1.48493 * 109.47151 * 330.00086 * 26 24 22 30 30 H 1.09004 * 109.46893 * 300.00000 * 1 2 3 31 31 H 1.08995 * 109.47517 * 60.00125 * 1 2 3 32 32 H 1.08997 * 109.46842 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46893 * 240.00000 * 2 1 3 34 34 H 1.09001 * 109.46898 * 120.00147 * 2 1 3 35 35 H 1.08991 * 109.46811 * 295.00109 * 5 3 2 36 36 H 1.09002 * 109.46927 * 54.99686 * 5 3 2 37 37 H 0.97000 * 119.99514 * 0.02562 * 6 5 3 38 38 H 1.07997 * 120.02008 * 0.02562 * 10 9 7 39 39 H 1.07999 * 119.80439 * 179.97438 * 11 10 9 40 40 H 1.08007 * 119.78626 * 180.02562 * 12 11 10 41 41 H 1.08001 * 119.98971 * 180.02562 * 13 12 11 42 42 H 1.07995 * 120.49045 * 0.02788 * 16 15 14 43 43 H 1.08000 * 119.55288 * 180.23097 * 17 16 15 44 44 H 1.08002 * 119.55683 * 179.97438 * 19 18 17 45 45 H 1.08003 * 120.49840 * 179.97438 * 20 19 18 46 46 H 0.96999 * 120.00179 * 264.99720 * 21 3 2 47 47 H 0.97000 * 120.00810 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 0.8417 5 6 3.5649 1.4444 0.1256 6 7 4.0631 2.8168 0.0058 7 6 5.3857 3.0630 0.0866 8 8 6.1653 2.1462 0.2585 9 6 5.8879 4.4468 -0.0337 10 6 4.9934 5.5151 -0.0943 11 6 5.4679 6.8058 -0.2072 12 6 6.8302 7.0494 -0.2604 13 6 7.7303 6.0039 -0.2017 14 6 7.2709 4.6956 -0.0824 15 6 8.2337 3.5708 -0.0123 16 6 9.2105 3.5226 0.9871 17 6 10.0840 2.4547 1.0181 18 7 10.0121 1.4946 0.1164 19 6 9.1094 1.5044 -0.8454 20 6 8.1936 2.5316 -0.9470 21 7 1.6524 2.0974 -1.2518 22 6 0.4156 2.6734 -1.3688 23 1 -0.2743 2.6445 -0.5383 24 6 0.0505 3.2989 -2.5530 25 7 0.8910 3.3339 -3.5652 26 14 -1.6338 4.0914 -2.7099 27 1 -1.5563 5.5092 -2.2749 28 1 -2.0791 4.0316 -4.1253 29 1 -2.6049 3.3636 -1.8541 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.8499 1.0377 1.0958 36 1 3.9954 0.8311 -0.6660 37 1 3.4410 3.5483 -0.1310 38 1 3.9298 5.3322 -0.0529 39 1 4.7729 7.6310 -0.2543 40 1 7.1908 8.0636 -0.3484 41 1 8.7911 6.2019 -0.2434 42 1 9.2778 4.3073 1.7260 43 1 10.8395 2.4066 1.7884 44 1 9.0868 0.6977 -1.5631 45 1 7.4575 2.5335 -1.7373 46 1 2.2719 2.1231 -1.9978 47 1 0.6358 3.7707 -4.3928 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481824026.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:07 Heat of formation + Delta-G solvation = 36.577430 kcal Electronic energy + Delta-G solvation = -29013.690373 eV Core-core repulsion = 25161.508718 eV Total energy + Delta-G solvation = -3852.181655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.64315 -39.37914 -38.26312 -36.70106 -34.12563 -33.24636 -32.46500 -31.43832 -31.01106 -29.86336 -29.73455 -27.86347 -24.66773 -23.81605 -23.58719 -23.08708 -22.37909 -21.28836 -20.28799 -19.83796 -18.10355 -17.28898 -16.85116 -16.20259 -15.81527 -15.76442 -15.41486 -15.15650 -14.77950 -14.69711 -14.51938 -14.05897 -13.70892 -13.58682 -13.39990 -13.29057 -13.17372 -13.03897 -12.82838 -12.53476 -12.14879 -11.89374 -11.59356 -11.48309 -11.36094 -11.02151 -10.92646 -10.79854 -10.49501 -10.24586 -10.22957 -10.05006 -9.59286 -9.44515 -9.33909 -9.16170 -9.01532 -8.96970 -8.63043 -8.54197 -7.09670 -5.87175 -3.16738 0.62956 1.02042 1.31990 1.59398 2.97480 3.34387 3.41303 3.42838 3.45221 3.79685 3.96595 4.35224 4.48759 4.56816 4.71196 4.74863 4.89435 4.98131 5.15560 5.22897 5.27036 5.33794 5.35855 5.39349 5.51040 5.55026 5.69740 5.74784 5.86763 5.87607 5.91744 5.92453 6.03763 6.07942 6.16968 6.20490 6.28970 6.38148 6.42836 6.49672 6.53016 6.56654 6.69519 6.80743 6.83795 6.97635 7.20504 7.60980 7.85066 8.09937 8.29822 8.47140 9.41992 9.96542 10.32640 11.34457 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012109 B = 0.003285 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.796807 B = 8520.315017 C =10052.049428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.163 3.837 4 H 0.053 0.947 5 C 0.116 3.884 6 N -0.704 5.704 7 C 0.547 3.453 8 O -0.536 6.536 9 C -0.114 4.114 10 C -0.078 4.078 11 C -0.120 4.120 12 C -0.097 4.097 13 C -0.114 4.114 14 C -0.004 4.004 15 C 0.007 3.993 16 C -0.161 4.161 17 C 0.087 3.913 18 N -0.487 5.487 19 C 0.091 3.909 20 C -0.097 4.097 21 N -0.722 5.722 22 C -0.239 4.239 23 H 0.073 0.927 24 C -0.010 4.010 25 N -0.928 5.928 26 Si 0.902 3.098 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.039 0.961 31 H 0.085 0.915 32 H 0.032 0.968 33 H 0.056 0.944 34 H 0.043 0.957 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.409 0.591 38 H 0.135 0.865 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.151 0.849 44 H 0.151 0.849 45 H 0.127 0.873 46 H 0.385 0.615 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.514 4.879 8.405 16.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.071 0.929 5 C -0.008 4.008 6 N -0.355 5.355 7 C 0.334 3.666 8 O -0.415 6.415 9 C -0.118 4.118 10 C -0.097 4.097 11 C -0.138 4.138 12 C -0.115 4.115 13 C -0.132 4.132 14 C -0.005 4.005 15 C -0.001 4.001 16 C -0.181 4.181 17 C -0.070 4.070 18 N -0.196 5.196 19 C -0.065 4.065 20 C -0.117 4.117 21 N -0.364 5.364 22 C -0.370 4.370 23 H 0.091 0.909 24 C -0.206 4.206 25 N -0.576 5.576 26 Si 0.733 3.267 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.207 1.207 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.247 0.753 38 H 0.153 0.847 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.168 0.832 44 H 0.169 0.831 45 H 0.145 0.855 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.440 3.572 8.572 17.168 hybrid contribution -1.967 1.497 -0.552 2.533 sum 12.473 5.069 8.020 15.671 Atomic orbital electron populations 1.21768 0.95681 0.99660 1.03241 1.22064 0.96992 0.98328 1.00044 1.20568 0.89861 0.92893 0.91430 0.92876 1.21688 0.95654 0.82307 1.01186 1.45942 1.06834 1.10997 1.71770 1.18189 0.82729 0.88189 0.77523 1.90807 1.55281 1.45752 1.49707 1.20052 0.92981 0.93792 1.04929 1.21442 0.99901 0.92186 0.96171 1.21219 0.95745 0.96888 0.99916 1.21265 0.93231 0.99113 0.97924 1.21143 1.00079 0.91040 1.00985 1.18682 0.91181 0.92649 0.98021 1.18852 0.93069 0.93534 0.94646 1.22045 0.96425 1.00484 0.99133 1.22482 0.97828 0.89919 0.96791 1.67535 1.22529 1.26340 1.03202 1.22504 0.91079 0.97138 0.95779 1.21969 0.97559 0.93403 0.98738 1.42460 1.16789 1.65881 1.11260 1.19201 0.92006 1.27667 0.98121 0.90909 1.24723 0.98011 1.01496 0.96376 1.69653 1.35236 1.48672 1.04048 0.86278 0.84169 0.79328 0.76932 1.21771 1.21850 1.20742 0.94143 0.89651 0.94858 0.92503 0.93855 0.91779 0.91678 0.75339 0.84675 0.85101 0.85347 0.85295 0.85304 0.83218 0.83122 0.85509 0.78096 0.93466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.18 37.16 0.34 -2.22 16 2 C -0.13 -2.25 5.61 -26.73 -0.15 -2.40 16 3 C 0.16 2.91 2.59 -67.93 -0.18 2.74 16 4 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 5 C 0.12 1.91 5.23 -4.04 -0.02 1.89 16 6 N -0.70 -11.40 5.34 -61.30 -0.33 -11.73 16 7 C 0.55 8.97 7.50 -12.40 -0.09 8.88 16 8 O -0.54 -9.80 12.28 5.30 0.07 -9.74 16 9 C -0.11 -1.64 5.88 -104.69 -0.62 -2.25 16 10 C -0.08 -1.00 9.52 -39.22 -0.37 -1.37 16 11 C -0.12 -1.26 10.02 -39.58 -0.40 -1.66 16 12 C -0.10 -0.92 10.03 -39.55 -0.40 -1.32 16 13 C -0.11 -1.20 9.66 -39.29 -0.38 -1.58 16 14 C 0.00 -0.06 5.46 -104.56 -0.57 -0.63 16 15 C 0.01 0.10 4.20 -104.60 -0.44 -0.34 16 16 C -0.16 -1.95 9.78 -39.07 -0.38 -2.34 16 17 C 0.09 1.08 11.17 -17.61 -0.20 0.88 16 18 N -0.49 -6.98 10.34 -13.34 -0.14 -7.12 16 19 C 0.09 1.27 11.17 -17.61 -0.20 1.07 16 20 C -0.10 -1.40 6.92 -39.08 -0.27 -1.68 16 21 N -0.72 -15.87 4.51 -53.43 -0.24 -16.11 16 22 C -0.24 -5.87 7.75 -15.06 -0.12 -5.99 16 23 H 0.07 1.76 7.32 -52.48 -0.38 1.37 16 24 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 25 N -0.93 -26.01 13.06 55.49 0.72 -25.28 16 26 Si 0.90 20.95 29.55 -169.99 -5.02 15.93 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.77 5.99 -51.93 -0.31 1.46 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.41 6.66 6.22 -40.82 -0.25 6.41 16 38 H 0.14 1.69 6.46 -52.49 -0.34 1.35 16 39 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 41 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 42 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 43 H 0.15 1.38 8.06 -52.49 -0.42 0.95 16 44 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 45 H 0.13 1.88 7.82 -52.48 -0.41 1.47 16 46 H 0.38 9.33 7.80 -40.82 -0.32 9.01 16 47 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 388.76 15.07 5.86 5.86 Total: -1.00 -29.85 388.76 -10.26 -40.11 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: -6.64 Total: 16.75 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -4.53 Total: -8.66 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: 0.02 Total: -60.25 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.07 Total: -9.74 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.85 -10.26 -40.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481824026.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.686 kcal (2) G-P(sol) polarization free energy of solvation -29.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds