Wall clock time and date at job start Tue Mar 31 2020 22:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47168 * 2 1 4 4 H 1.08999 * 109.47117 * 304.99929 * 3 2 1 5 5 C 1.52997 * 109.46917 * 185.00383 * 3 2 1 6 6 N 1.46504 * 109.47074 * 184.99897 * 5 3 2 7 7 C 1.34771 * 120.00313 * 179.97438 * 6 5 3 8 8 O 1.21572 * 119.99921 * 0.02562 * 7 6 5 9 9 C 1.47685 * 120.00384 * 179.97438 * 7 6 5 10 10 C 1.39468 * 120.20790 * 6.49828 * 9 7 6 11 11 C 1.37973 * 119.97044 * 179.71834 * 10 9 7 12 12 C 1.38485 * 120.40090 * 0.28296 * 11 10 9 13 13 C 1.38078 * 120.42049 * 359.97438 * 12 11 10 14 14 C 1.39173 * 120.01597 * 359.97438 * 13 12 11 15 15 C 1.48224 * 120.19586 * 180.02562 * 14 13 12 16 16 C 1.39827 * 120.91743 * 57.63219 * 15 14 13 17 17 C 1.37996 * 119.01272 * 179.77696 * 16 15 14 18 18 N 1.31909 * 120.88728 * 0.52199 * 17 16 15 19 19 C 1.31908 * 122.02587 * 359.73339 * 18 17 16 20 20 C 1.37987 * 120.88926 * 359.97438 * 19 18 17 21 21 N 1.46502 * 109.47217 * 64.99963 * 3 2 1 22 22 C 1.36930 * 120.00328 * 275.00106 * 21 3 2 23 23 H 1.07996 * 119.99912 * 359.97438 * 22 21 3 24 24 C 1.38813 * 120.00397 * 180.02562 * 22 21 3 25 25 N 1.31623 * 119.99606 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00327 * 180.02562 * 24 22 21 27 27 H 1.48490 * 109.47540 * 89.99643 * 26 24 22 28 28 H 1.48505 * 109.46847 * 209.99854 * 26 24 22 29 29 H 1.48501 * 109.46865 * 329.99502 * 26 24 22 30 30 H 1.09001 * 109.46508 * 300.00140 * 1 2 3 31 31 H 1.08999 * 109.47000 * 59.99661 * 1 2 3 32 32 H 1.08998 * 109.47123 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46508 * 239.99859 * 2 1 3 34 34 H 1.08999 * 109.47000 * 120.00338 * 2 1 3 35 35 H 1.08992 * 109.47365 * 65.00216 * 5 3 2 36 36 H 1.09000 * 109.47075 * 304.99505 * 5 3 2 37 37 H 0.97006 * 120.00026 * 0.02562 * 6 5 3 38 38 H 1.08002 * 120.00946 * 0.02562 * 10 9 7 39 39 H 1.08001 * 119.80009 * 180.25471 * 11 10 9 40 40 H 1.08005 * 119.79049 * 180.02562 * 12 11 10 41 41 H 1.08001 * 119.99173 * 180.02562 * 13 12 11 42 42 H 1.07998 * 120.49340 * 0.03350 * 16 15 14 43 43 H 1.08004 * 119.55273 * 180.23375 * 17 16 15 44 44 H 1.07997 * 119.55486 * 179.97438 * 19 18 17 45 45 H 1.08004 * 120.49867 * 179.97438 * 20 19 18 46 46 H 0.97008 * 119.99485 * 95.00053 * 21 3 2 47 47 H 0.96996 * 119.99552 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1258 6 7 4.0631 2.8167 -0.0061 7 6 5.3858 3.0629 -0.0860 8 8 6.1654 2.1460 -0.2579 9 6 5.8880 4.4465 0.0341 10 6 5.0158 5.4834 0.3645 11 6 5.4914 6.7733 0.4812 12 6 6.8316 7.0482 0.2663 13 6 7.7085 6.0350 -0.0668 14 6 7.2477 4.7273 -0.1880 15 6 8.1857 3.6365 -0.5448 16 6 9.3127 3.3728 0.2396 17 6 10.1572 2.3446 -0.1264 18 7 9.9180 1.6230 -1.2044 19 6 8.8696 1.8420 -1.9743 20 6 7.9708 2.8463 -1.6783 21 7 1.6525 2.0975 1.2518 22 6 0.4158 2.6735 1.3689 23 1 -0.2738 2.6453 0.5382 24 6 0.0487 3.2946 2.5548 25 7 0.8894 3.3294 3.5670 26 14 -1.6387 4.0797 2.7147 27 1 -2.6045 3.0767 3.2307 28 1 -1.5642 5.2255 3.6565 29 1 -2.0887 4.5612 1.3839 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.8498 1.0377 -1.0961 36 1 3.9954 0.8310 0.6658 37 1 3.4411 3.5483 0.1315 38 1 3.9695 5.2759 0.5338 39 1 4.8144 7.5736 0.7412 40 1 7.1934 8.0615 0.3607 41 1 8.7524 6.2571 -0.2324 42 1 9.5170 3.9623 1.1212 43 1 11.0283 2.1309 0.4754 44 1 8.7125 1.2270 -2.8480 45 1 7.1146 3.0204 -2.3133 46 1 2.2721 2.1231 1.9978 47 1 0.6328 3.7631 4.3958 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481824027.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:10 Heat of formation + Delta-G solvation = 36.364538 kcal Electronic energy + Delta-G solvation = -28988.081240 eV Core-core repulsion = 25135.890353 eV Total energy + Delta-G solvation = -3852.190887 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.64681 -39.38867 -38.26108 -36.69951 -34.12441 -33.25283 -32.46546 -31.43968 -31.02812 -29.86488 -29.73681 -27.86393 -24.67026 -23.82136 -23.59608 -23.09402 -22.37961 -21.29255 -20.28513 -19.83734 -18.10078 -17.29571 -16.85309 -16.20541 -15.82587 -15.78638 -15.36785 -15.21967 -14.73354 -14.69122 -14.55082 -14.05490 -13.71894 -13.57004 -13.45033 -13.29358 -13.17386 -13.00633 -12.85058 -12.52973 -12.15190 -11.88532 -11.61605 -11.48343 -11.35691 -11.01387 -10.95077 -10.78785 -10.49182 -10.24988 -10.22940 -10.04866 -9.59361 -9.45168 -9.34838 -9.16187 -9.02283 -8.97038 -8.63143 -8.55929 -7.09763 -5.87205 -3.16832 0.62820 1.02089 1.30241 1.58298 2.97749 3.34802 3.40912 3.42667 3.45595 3.79383 3.94474 4.34650 4.48725 4.55116 4.72095 4.75564 4.90475 4.96686 5.14697 5.21845 5.27013 5.33079 5.36052 5.39090 5.51026 5.54752 5.67745 5.75286 5.84839 5.86942 5.91675 5.92387 6.03151 6.08034 6.16739 6.20270 6.29994 6.37788 6.41070 6.49562 6.53090 6.56601 6.69927 6.78772 6.83799 6.97797 7.20017 7.60943 7.85333 8.08174 8.29804 8.47514 9.41883 9.96516 10.32589 11.34421 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012349 B = 0.003264 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.832302 B = 8575.273933 C =10265.710304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.054 0.946 5 C 0.116 3.884 6 N -0.704 5.704 7 C 0.547 3.453 8 O -0.536 6.536 9 C -0.115 4.115 10 C -0.078 4.078 11 C -0.119 4.119 12 C -0.097 4.097 13 C -0.115 4.115 14 C -0.005 4.005 15 C 0.009 3.991 16 C -0.160 4.160 17 C 0.089 3.911 18 N -0.487 5.487 19 C 0.090 3.910 20 C -0.100 4.100 21 N -0.722 5.722 22 C -0.239 4.239 23 H 0.073 0.927 24 C -0.010 4.010 25 N -0.928 5.928 26 Si 0.902 3.098 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.032 0.968 33 H 0.043 0.957 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.409 0.591 38 H 0.138 0.862 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.151 0.849 44 H 0.151 0.849 45 H 0.125 0.875 46 H 0.385 0.615 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.451 5.080 -9.380 17.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.053 3.947 4 H 0.072 0.928 5 C -0.008 4.008 6 N -0.356 5.356 7 C 0.334 3.666 8 O -0.415 6.415 9 C -0.118 4.118 10 C -0.097 4.097 11 C -0.137 4.137 12 C -0.115 4.115 13 C -0.133 4.133 14 C -0.006 4.006 15 C 0.001 3.999 16 C -0.180 4.180 17 C -0.068 4.068 18 N -0.196 5.196 19 C -0.066 4.066 20 C -0.120 4.120 21 N -0.364 5.364 22 C -0.370 4.370 23 H 0.091 0.909 24 C -0.206 4.206 25 N -0.576 5.576 26 Si 0.733 3.267 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.247 0.753 38 H 0.156 0.844 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.169 0.831 44 H 0.168 0.832 45 H 0.143 0.857 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.368 3.810 -9.747 17.775 hybrid contribution -1.938 1.409 0.963 2.582 sum 12.430 5.219 -8.784 16.091 Atomic orbital electron populations 1.21768 0.95696 0.99673 1.03225 1.22065 0.96988 0.98344 1.00051 1.20569 0.89867 0.92874 0.91437 0.92843 1.21687 0.95647 0.82315 1.01178 1.45941 1.06838 1.10991 1.71793 1.18185 0.82725 0.88224 0.77502 1.90809 1.55393 1.45683 1.49646 1.20059 0.93335 0.93909 1.04493 1.21494 1.00029 0.92273 0.95891 1.21230 0.95851 0.96793 0.99866 1.21267 0.93447 0.99230 0.97602 1.21138 1.00075 0.91336 1.00752 1.18683 0.91411 0.92776 0.97768 1.18851 0.92812 0.94008 0.94238 1.22074 0.95248 1.00061 1.00594 1.22497 0.98723 0.91820 0.93762 1.67531 1.20104 1.26853 1.05155 1.22477 0.90219 0.95479 0.98379 1.21908 0.98515 0.95014 0.96559 1.42468 1.16783 1.65877 1.11286 1.19201 0.91976 1.27752 0.98045 0.90897 1.24729 0.97992 1.01556 0.96364 1.69664 1.35113 1.48886 1.03968 0.86276 0.84278 0.78809 0.77333 1.21737 1.21846 1.20763 0.89682 0.94111 0.94848 0.93838 0.92522 0.91736 0.91730 0.75341 0.84449 0.85071 0.85355 0.85313 0.85208 0.83144 0.83216 0.85728 0.78096 0.93467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.18 37.16 0.34 -2.21 16 2 C -0.13 -2.26 5.61 -26.73 -0.15 -2.41 16 3 C 0.16 2.91 2.59 -67.93 -0.18 2.74 16 4 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 5 C 0.12 1.92 5.23 -4.04 -0.02 1.90 16 6 N -0.70 -11.41 5.34 -61.30 -0.33 -11.73 16 7 C 0.55 8.98 7.50 -12.40 -0.09 8.89 16 8 O -0.54 -9.83 12.33 5.30 0.07 -9.77 16 9 C -0.11 -1.64 5.88 -104.69 -0.62 -2.26 16 10 C -0.08 -1.01 9.52 -39.22 -0.37 -1.38 16 11 C -0.12 -1.28 10.02 -39.59 -0.40 -1.67 16 12 C -0.10 -0.92 10.03 -39.55 -0.40 -1.32 16 13 C -0.11 -1.20 9.65 -39.29 -0.38 -1.58 16 14 C -0.01 -0.07 5.46 -104.55 -0.57 -0.64 16 15 C 0.01 0.13 4.18 -104.60 -0.44 -0.31 16 16 C -0.16 -1.98 9.77 -39.08 -0.38 -2.36 16 17 C 0.09 1.11 11.17 -17.61 -0.20 0.92 16 18 N -0.49 -6.90 10.34 -13.34 -0.14 -7.04 16 19 C 0.09 1.21 11.17 -17.61 -0.20 1.01 16 20 C -0.10 -1.37 6.95 -39.08 -0.27 -1.65 16 21 N -0.72 -15.94 4.51 -53.43 -0.24 -16.18 16 22 C -0.24 -5.87 7.75 -15.06 -0.12 -5.99 16 23 H 0.07 1.76 7.32 -52.49 -0.38 1.37 16 24 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 25 N -0.93 -26.08 13.06 55.49 0.72 -25.36 16 26 Si 0.90 20.96 29.55 -169.99 -5.02 15.94 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 30 H 0.08 1.76 5.99 -51.93 -0.31 1.45 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.41 6.65 6.21 -40.82 -0.25 6.40 16 38 H 0.14 1.81 6.45 -52.49 -0.34 1.47 16 39 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 40 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 41 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 42 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 43 H 0.15 1.42 8.06 -52.48 -0.42 1.00 16 44 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 45 H 0.12 1.65 7.85 -52.48 -0.41 1.24 16 46 H 0.38 9.40 7.80 -40.82 -0.32 9.08 16 47 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 388.86 15.07 5.86 5.86 Total: -1.00 -30.01 388.86 -10.26 -40.26 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -6.65 Total: 16.70 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -4.53 Total: -8.69 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: 0.02 Total: -60.31 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.07 Total: -9.77 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.01 -10.26 -40.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481824027.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.627 kcal (2) G-P(sol) polarization free energy of solvation -30.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds