Wall clock time and date at job start Tue Mar 31 2020 22:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47168 * 2 1 4 4 H 1.08999 * 109.47117 * 304.99929 * 3 2 1 5 5 C 1.52997 * 109.46917 * 185.00383 * 3 2 1 6 6 N 1.46504 * 109.47074 * 184.99897 * 5 3 2 7 7 C 1.34771 * 120.00313 * 179.97438 * 6 5 3 8 8 O 1.21572 * 119.99921 * 0.02562 * 7 6 5 9 9 C 1.47685 * 120.00384 * 179.97438 * 7 6 5 10 10 C 1.39468 * 120.20790 * 6.49828 * 9 7 6 11 11 C 1.37973 * 119.97044 * 179.71834 * 10 9 7 12 12 C 1.38485 * 120.40090 * 0.28296 * 11 10 9 13 13 C 1.38078 * 120.42049 * 359.97438 * 12 11 10 14 14 C 1.39173 * 120.01597 * 359.97438 * 13 12 11 15 15 C 1.48224 * 120.19586 * 180.02562 * 14 13 12 16 16 C 1.39827 * 120.91743 * 57.63219 * 15 14 13 17 17 C 1.37996 * 119.01272 * 179.77696 * 16 15 14 18 18 N 1.31909 * 120.88728 * 0.52199 * 17 16 15 19 19 C 1.31908 * 122.02587 * 359.73339 * 18 17 16 20 20 C 1.37987 * 120.88926 * 359.97438 * 19 18 17 21 21 N 1.46502 * 109.47217 * 64.99963 * 3 2 1 22 22 C 1.36930 * 120.00328 * 275.00106 * 21 3 2 23 23 H 1.07996 * 119.99912 * 359.97438 * 22 21 3 24 24 C 1.38813 * 120.00397 * 180.02562 * 22 21 3 25 25 N 1.31623 * 119.99606 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00327 * 180.02562 * 24 22 21 27 27 H 1.48490 * 109.47540 * 89.99643 * 26 24 22 28 28 H 1.48505 * 109.46847 * 209.99854 * 26 24 22 29 29 H 1.48501 * 109.46865 * 329.99502 * 26 24 22 30 30 H 1.09001 * 109.46508 * 300.00140 * 1 2 3 31 31 H 1.08999 * 109.47000 * 59.99661 * 1 2 3 32 32 H 1.08998 * 109.47123 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46508 * 239.99859 * 2 1 3 34 34 H 1.08999 * 109.47000 * 120.00338 * 2 1 3 35 35 H 1.08992 * 109.47365 * 65.00216 * 5 3 2 36 36 H 1.09000 * 109.47075 * 304.99505 * 5 3 2 37 37 H 0.97006 * 120.00026 * 0.02562 * 6 5 3 38 38 H 1.08002 * 120.00946 * 0.02562 * 10 9 7 39 39 H 1.08001 * 119.80009 * 180.25471 * 11 10 9 40 40 H 1.08005 * 119.79049 * 180.02562 * 12 11 10 41 41 H 1.08001 * 119.99173 * 180.02562 * 13 12 11 42 42 H 1.07998 * 120.49340 * 0.03350 * 16 15 14 43 43 H 1.08004 * 119.55273 * 180.23375 * 17 16 15 44 44 H 1.07997 * 119.55486 * 179.97438 * 19 18 17 45 45 H 1.08004 * 120.49867 * 179.97438 * 20 19 18 46 46 H 0.97008 * 119.99485 * 95.00053 * 21 3 2 47 47 H 0.96996 * 119.99552 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1258 6 7 4.0631 2.8167 -0.0061 7 6 5.3858 3.0629 -0.0860 8 8 6.1654 2.1460 -0.2579 9 6 5.8880 4.4465 0.0341 10 6 5.0158 5.4834 0.3645 11 6 5.4914 6.7733 0.4812 12 6 6.8316 7.0482 0.2663 13 6 7.7085 6.0350 -0.0668 14 6 7.2477 4.7273 -0.1880 15 6 8.1857 3.6365 -0.5448 16 6 9.3127 3.3728 0.2396 17 6 10.1572 2.3446 -0.1264 18 7 9.9180 1.6230 -1.2044 19 6 8.8696 1.8420 -1.9743 20 6 7.9708 2.8463 -1.6783 21 7 1.6525 2.0975 1.2518 22 6 0.4158 2.6735 1.3689 23 1 -0.2738 2.6453 0.5382 24 6 0.0487 3.2946 2.5548 25 7 0.8894 3.3294 3.5670 26 14 -1.6387 4.0797 2.7147 27 1 -2.6045 3.0767 3.2307 28 1 -1.5642 5.2255 3.6565 29 1 -2.0887 4.5612 1.3839 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.8498 1.0377 -1.0961 36 1 3.9954 0.8310 0.6658 37 1 3.4411 3.5483 0.1315 38 1 3.9695 5.2759 0.5338 39 1 4.8144 7.5736 0.7412 40 1 7.1934 8.0615 0.3607 41 1 8.7524 6.2571 -0.2324 42 1 9.5170 3.9623 1.1212 43 1 11.0283 2.1309 0.4754 44 1 8.7125 1.2270 -2.8480 45 1 7.1146 3.0204 -2.3133 46 1 2.2721 2.1231 1.9978 47 1 0.6328 3.7631 4.3958 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481824027.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:09 Heat of formation + Delta-G solvation = 19.301279 kcal Electronic energy + Delta-G solvation = -28988.821158 eV Core-core repulsion = 25135.890353 eV Total energy + Delta-G solvation = -3852.930805 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.69121 -40.47352 -39.32282 -38.19936 -35.45877 -34.42966 -34.09003 -32.43346 -32.00864 -31.46914 -30.76498 -29.33284 -25.99052 -25.16901 -24.70918 -24.24473 -23.61513 -22.26980 -21.66806 -21.12723 -19.41508 -18.86855 -17.91381 -17.27157 -17.08535 -16.89506 -16.70675 -16.23550 -16.03997 -15.75761 -15.71917 -15.60743 -15.12035 -14.71350 -14.58448 -14.53529 -14.30347 -14.20390 -14.14093 -13.82926 -13.49994 -12.98649 -12.80962 -12.78784 -12.74516 -12.55169 -12.36624 -12.23261 -12.09575 -11.89752 -11.64673 -11.38161 -11.31962 -10.90590 -10.47452 -10.37402 -10.21349 -9.94916 -9.79460 -9.57587 -8.98502 -7.87530 -5.15055 -0.34165 0.11213 0.33128 0.62641 1.49655 1.51860 1.58253 1.87658 2.22136 2.59598 2.79284 2.96272 3.42065 3.46058 3.65094 3.70380 3.82331 3.89344 3.95702 4.03490 4.11633 4.22153 4.30261 4.35157 4.40471 4.43678 4.46853 4.54668 4.63712 4.70761 4.75822 4.85824 4.89144 4.92285 5.07680 5.11170 5.12286 5.19615 5.20592 5.33295 5.43765 5.45635 5.47052 5.55733 5.61289 5.70804 5.83593 5.86784 6.32100 6.55720 7.09910 7.19707 7.40165 8.10950 8.36550 9.35178 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012349 B = 0.003264 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.832302 B = 8575.273933 C =10265.710304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.165 3.835 4 H 0.059 0.941 5 C 0.126 3.874 6 N -0.706 5.706 7 C 0.544 3.456 8 O -0.560 6.560 9 C -0.139 4.139 10 C -0.090 4.090 11 C -0.121 4.121 12 C -0.082 4.082 13 C -0.110 4.110 14 C -0.017 4.017 15 C -0.002 4.002 16 C -0.164 4.164 17 C 0.083 3.917 18 N -0.509 5.509 19 C 0.079 3.921 20 C -0.113 4.113 21 N -0.727 5.727 22 C -0.217 4.217 23 H 0.080 0.920 24 C -0.070 4.070 25 N -0.967 5.967 26 Si 0.958 3.042 27 H -0.296 1.296 28 H -0.301 1.301 29 H -0.268 1.268 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.047 0.953 37 H 0.408 0.592 38 H 0.126 0.874 39 H 0.152 0.848 40 H 0.167 0.833 41 H 0.154 0.846 42 H 0.152 0.848 43 H 0.179 0.821 44 H 0.166 0.834 45 H 0.120 0.880 46 H 0.372 0.628 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.141 6.363 -10.458 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.057 3.943 4 H 0.077 0.923 5 C 0.001 3.999 6 N -0.357 5.357 7 C 0.332 3.668 8 O -0.441 6.441 9 C -0.142 4.142 10 C -0.109 4.109 11 C -0.139 4.139 12 C -0.100 4.100 13 C -0.128 4.128 14 C -0.018 4.018 15 C -0.011 4.011 16 C -0.183 4.183 17 C -0.074 4.074 18 N -0.219 5.219 19 C -0.076 4.076 20 C -0.133 4.133 21 N -0.368 5.368 22 C -0.349 4.349 23 H 0.098 0.902 24 C -0.262 4.262 25 N -0.618 5.618 26 Si 0.789 3.211 27 H -0.224 1.224 28 H -0.229 1.229 29 H -0.193 1.193 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.245 0.755 38 H 0.144 0.856 39 H 0.170 0.830 40 H 0.184 0.816 41 H 0.172 0.828 42 H 0.169 0.831 43 H 0.196 0.804 44 H 0.183 0.817 45 H 0.138 0.862 46 H 0.203 0.797 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 15.043 5.080 -10.884 19.250 hybrid contribution -2.096 0.997 1.226 2.625 sum 12.948 6.077 -9.658 17.258 Atomic orbital electron populations 1.21695 0.95843 1.00601 1.01841 1.21989 0.96739 0.97356 1.00945 1.20704 0.90774 0.93288 0.89572 0.92264 1.21548 0.94427 0.82561 1.01333 1.45935 1.07059 1.10691 1.71972 1.18592 0.82350 0.89173 0.76663 1.90786 1.55791 1.46704 1.50850 1.19958 0.94362 0.92862 1.07009 1.21495 0.99423 0.93238 0.96763 1.21536 0.97068 0.96175 0.99087 1.21700 0.92505 1.00728 0.95072 1.21467 1.01539 0.90251 0.99554 1.18835 0.90740 0.93911 0.98345 1.19088 0.93356 0.94294 0.94321 1.22348 0.94766 1.00231 1.00996 1.23014 0.99508 0.91391 0.93460 1.67575 1.20577 1.27693 1.06053 1.22773 0.90161 0.95685 0.98981 1.21958 0.98630 0.95612 0.97097 1.42576 1.15818 1.66122 1.12272 1.19490 0.92447 1.25380 0.97564 0.90202 1.25346 1.00821 1.03438 0.96607 1.69811 1.36730 1.50952 1.04296 0.85366 0.80921 0.77433 0.77412 1.22428 1.22850 1.19312 0.93260 0.93074 0.92904 0.90724 0.93789 0.90145 0.93420 0.75458 0.85627 0.82999 0.81552 0.82804 0.83069 0.80398 0.81687 0.86160 0.79657 0.94440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 9.18 71.98 0.66 -4.09 16 2 C -0.13 -4.21 5.61 30.59 0.17 -4.04 16 3 C 0.17 5.83 2.59 44.99 0.12 5.94 16 4 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 5 C 0.13 4.16 5.23 86.38 0.45 4.61 16 6 N -0.71 -23.37 5.34 -466.14 -2.49 -25.86 16 7 C 0.54 18.30 7.50 86.74 0.65 18.95 16 8 O -0.56 -21.04 12.33 -3.94 -0.05 -21.09 16 9 C -0.14 -3.99 5.88 -19.91 -0.12 -4.11 16 10 C -0.09 -2.31 9.52 22.50 0.21 -2.10 16 11 C -0.12 -2.33 10.02 22.27 0.22 -2.10 16 12 C -0.08 -1.27 10.03 22.29 0.22 -1.05 16 13 C -0.11 -2.00 9.65 22.46 0.22 -1.79 16 14 C -0.02 -0.44 5.46 -19.82 -0.11 -0.54 16 15 C 0.00 -0.06 4.18 -19.85 -0.08 -0.14 16 16 C -0.16 -3.86 9.77 22.60 0.22 -3.64 16 17 C 0.08 1.98 11.17 84.62 0.95 2.93 16 18 N -0.51 -14.20 10.34 -196.12 -2.03 -16.23 16 19 C 0.08 2.13 11.17 84.62 0.95 3.08 16 20 C -0.11 -3.14 6.95 22.60 0.16 -2.98 16 21 N -0.73 -32.47 4.51 -322.96 -1.46 -33.93 16 22 C -0.22 -10.68 7.75 84.03 0.65 -10.03 16 23 H 0.08 3.78 7.32 -2.91 -0.02 3.76 16 24 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 25 N -0.97 -55.71 13.06 21.65 0.28 -55.43 16 26 Si 0.96 43.53 29.55 68.60 2.03 45.56 16 27 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 28 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 29 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 30 H 0.05 2.00 5.99 -2.39 -0.01 1.98 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.41 13.66 6.21 -92.70 -0.58 13.09 16 38 H 0.13 3.42 6.45 -2.91 -0.02 3.40 16 39 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 40 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 41 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 42 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 43 H 0.18 3.02 8.06 -2.91 -0.02 3.00 16 44 H 0.17 3.64 8.06 -2.91 -0.02 3.62 16 45 H 0.12 3.30 7.85 -2.91 -0.02 3.28 16 46 H 0.37 18.66 7.80 -92.70 -0.72 17.94 16 47 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -65.92 388.86 1.99 -63.93 By element: Atomic # 1 Polarization: 47.69 SS G_CDS: -0.30 Total: 47.39 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 6.01 Total: -4.34 kcal Atomic # 7 Polarization: -125.75 SS G_CDS: -5.69 Total: -131.44 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.05 Total: -21.09 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -65.92 1.99 -63.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481824027.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.229 kcal (2) G-P(sol) polarization free energy of solvation -65.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds