Wall clock time and date at job start Tue Mar 31 2020 22:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47040 * 2 1 4 4 N 1.46501 * 109.47312 * 300.00241 * 3 2 1 5 5 C 1.36935 * 119.99778 * 180.02562 * 4 3 2 6 6 H 1.07999 * 120.00143 * 359.97438 * 5 4 3 7 7 C 1.38818 * 119.99839 * 179.97438 * 5 4 3 8 8 N 1.31621 * 119.99564 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99880 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47435 * 89.99755 * 9 7 5 11 11 H 1.48500 * 109.46837 * 209.99956 * 9 7 5 12 12 H 1.48497 * 109.47160 * 329.99192 * 9 7 5 13 13 N 1.46499 * 109.47222 * 240.00182 * 2 1 3 14 14 C 1.34772 * 120.00278 * 184.10986 * 13 2 1 15 15 O 1.21610 * 119.99677 * 5.09865 * 14 13 2 16 16 C 1.47446 * 120.00554 * 185.09618 * 14 13 2 17 17 C 1.38864 * 120.46018 * 354.06111 * 16 14 13 18 18 C 1.38895 * 120.67961 * 179.76446 * 17 16 14 19 19 C 1.36377 * 121.26962 * 0.51349 * 18 17 16 20 20 C 1.40399 * 119.98658 * 359.74752 * 19 18 17 21 21 C 1.40467 * 121.94941 * 180.02562 * 20 19 18 22 22 N 1.31281 * 119.88005 * 180.02562 * 21 20 19 23 23 C 1.32556 * 122.72926 * 359.97438 * 22 21 20 24 24 C 1.36329 * 121.82306 * 359.97438 * 23 22 21 25 25 C 1.40285 * 118.70166 * 0.02562 * 24 23 22 26 26 C 1.52996 * 109.46771 * 120.00222 * 2 1 3 27 27 C 1.53000 * 117.52375 * 348.56125 * 26 2 1 28 28 C 1.52997 * 117.50316 * 57.19393 * 26 2 1 29 29 H 1.09001 * 109.47267 * 300.00089 * 1 2 3 30 30 H 1.09004 * 109.47165 * 60.00064 * 1 2 3 31 31 H 1.09003 * 109.47273 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46731 * 60.00145 * 3 2 1 33 33 H 1.09001 * 109.47231 * 179.97438 * 3 2 1 34 34 H 0.96998 * 119.99746 * 359.97438 * 4 3 2 35 35 H 0.97003 * 119.99209 * 180.02562 * 8 7 5 36 36 H 0.97002 * 120.00101 * 4.11501 * 13 2 1 37 37 H 1.08004 * 119.66062 * 0.02562 * 17 16 14 38 38 H 1.07994 * 119.36828 * 180.24094 * 18 17 16 39 39 H 1.08007 * 120.00750 * 179.76677 * 19 18 17 40 40 H 1.08000 * 120.06267 * 0.02562 * 21 20 19 41 41 H 1.08002 * 119.08100 * 180.02562 * 23 22 21 42 42 H 1.08006 * 120.64232 * 180.02562 * 24 23 22 43 43 H 1.09009 * 115.54672 * 202.86265 * 26 2 1 44 44 H 1.08992 * 117.50461 * 214.97303 * 27 26 2 45 45 H 1.09007 * 117.49149 * 359.97438 * 27 26 2 46 46 H 1.09001 * 117.49165 * 359.97438 * 28 26 2 47 47 H 1.08991 * 117.50140 * 144.99287 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1332 -1.1961 5 6 1.8829 3.4440 -1.4130 6 1 2.5038 3.9689 -0.7021 7 6 1.4206 4.0983 -2.5467 8 7 0.6643 3.4585 -3.4133 9 14 1.8719 5.8867 -2.8422 10 1 3.1349 5.9566 -3.6199 11 1 0.7843 6.5523 -3.6033 12 1 2.0549 6.5730 -1.5381 13 7 2.0184 -0.6906 -1.1962 14 6 3.3405 -0.8866 -1.3685 15 8 4.1211 -0.5742 -0.4899 16 6 3.8407 -1.4800 -2.6222 17 6 2.9536 -1.9530 -3.5802 18 6 3.4197 -2.5084 -4.7649 19 6 4.7552 -2.6157 -5.0191 20 6 5.6882 -2.1553 -4.0763 21 6 7.0727 -2.2449 -4.2958 22 7 7.9091 -1.8019 -3.3860 23 6 7.5063 -1.2613 -2.2447 24 6 6.1843 -1.1288 -1.9391 25 6 5.2306 -1.5802 -2.8637 26 6 2.0399 -0.7213 1.2492 27 6 1.0217 -1.0432 2.3449 28 6 1.5822 -2.1647 1.4679 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4426 0.0005 34 1 0.9942 1.6617 -1.8348 35 1 0.3415 3.9157 -4.2056 36 1 1.3901 -1.0066 -1.8642 37 1 1.8902 -1.8846 -3.4040 38 1 2.7109 -2.8661 -5.4970 39 1 5.0952 -3.0545 -5.9456 40 1 7.4485 -2.6774 -5.2112 41 1 8.2459 -0.9156 -1.5376 42 1 5.8773 -0.6851 -1.0035 43 1 3.0510 -0.4610 1.5626 44 1 1.3627 -0.9947 3.3789 45 1 -0.0118 -0.7407 2.1760 46 1 0.9173 -2.6003 0.7220 47 1 2.2920 -2.8540 1.9251 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481952329.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:24 Heat of formation + Delta-G solvation = 70.444479 kcal Electronic energy + Delta-G solvation = -29888.023497 eV Core-core repulsion = 26037.310428 eV Total energy + Delta-G solvation = -3850.713070 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.05756 -39.88323 -37.82923 -37.00826 -35.02918 -33.58730 -32.82974 -31.66119 -30.90360 -29.87530 -29.01133 -26.22845 -24.70066 -23.98981 -23.46323 -23.20645 -22.24029 -21.40720 -20.66086 -18.93211 -17.98689 -17.80003 -17.26766 -16.51508 -16.19418 -15.93323 -15.28129 -15.06505 -14.76684 -14.53099 -14.45301 -14.13968 -13.83573 -13.78690 -13.28759 -13.20559 -12.86259 -12.61032 -12.38172 -12.15364 -12.03401 -12.01122 -11.86301 -11.61248 -11.30339 -11.08790 -10.91757 -10.81551 -10.64474 -10.29116 -10.16024 -10.09802 -9.92310 -9.69841 -9.63806 -9.15086 -9.06527 -8.81762 -8.69295 -8.06442 -6.88146 -5.76443 -3.02712 0.13082 0.87109 1.72382 2.76064 3.23267 3.44483 3.48463 3.50108 3.51074 4.06454 4.16599 4.43762 4.52373 4.58032 4.60807 4.69765 4.80573 4.87279 4.96886 5.05812 5.07213 5.16856 5.31769 5.36751 5.42502 5.55356 5.60179 5.63119 5.67844 5.73940 5.86021 5.91557 5.94197 5.96007 6.00169 6.16940 6.17880 6.20128 6.24998 6.36594 6.49686 6.50488 6.57549 6.65620 6.77211 6.86548 7.04400 7.72522 7.80190 7.98809 8.43280 8.52068 9.54953 10.11769 10.47425 11.46824 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007969 B = 0.004595 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3512.619936 B = 6092.410173 C = 7960.927650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.201 3.799 3 C 0.147 3.853 4 N -0.726 5.726 5 C -0.232 4.232 6 H 0.069 0.931 7 C -0.014 4.014 8 N -0.936 5.936 9 Si 0.904 3.096 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 N -0.701 5.701 14 C 0.573 3.427 15 O -0.528 6.528 16 C -0.116 4.116 17 C -0.057 4.057 18 C -0.127 4.127 19 C -0.067 4.067 20 C -0.119 4.119 21 C 0.135 3.865 22 N -0.489 5.489 23 C 0.066 3.934 24 C -0.146 4.146 25 C 0.011 3.989 26 C -0.142 4.142 27 C -0.182 4.182 28 C -0.175 4.175 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.027 0.973 33 H 0.038 0.962 34 H 0.381 0.619 35 H 0.253 0.747 36 H 0.396 0.604 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.161 0.839 41 H 0.152 0.848 42 H 0.177 0.823 43 H 0.117 0.883 44 H 0.090 0.910 45 H 0.100 0.900 46 H 0.089 0.911 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.174 -17.355 1.388 17.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.116 3.884 3 C 0.018 3.982 4 N -0.371 5.371 5 C -0.363 4.363 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.586 5.586 9 Si 0.736 3.264 10 H -0.219 1.219 11 H -0.218 1.218 12 H -0.208 1.208 13 N -0.351 5.351 14 C 0.360 3.640 15 O -0.407 6.407 16 C -0.119 4.119 17 C -0.077 4.077 18 C -0.145 4.145 19 C -0.087 4.087 20 C -0.121 4.121 21 C -0.037 4.037 22 N -0.197 5.197 23 C -0.077 4.077 24 C -0.164 4.164 25 C 0.006 3.994 26 C -0.161 4.161 27 C -0.220 4.220 28 C -0.212 4.212 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.215 0.785 35 H 0.063 0.937 36 H 0.231 0.769 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.178 0.822 41 H 0.170 0.830 42 H 0.194 0.806 43 H 0.135 0.865 44 H 0.108 0.892 45 H 0.118 0.882 46 H 0.107 0.893 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.701 -16.910 2.058 17.672 hybrid contribution -1.215 0.875 -0.813 1.704 sum 3.486 -16.036 1.245 16.457 Atomic orbital electron populations 1.22138 0.93435 1.01363 1.04342 1.20069 0.93568 0.92376 0.82431 1.21005 0.97868 0.88100 0.91192 1.42251 1.61291 1.10516 1.23032 1.19225 1.25113 0.87609 1.04342 0.91339 1.24668 1.00679 0.98190 0.97437 1.69641 1.39730 1.36089 1.13094 0.86216 0.77412 0.85080 0.77701 1.21858 1.21827 1.20777 1.45878 1.06615 1.58878 1.23745 1.17766 0.82536 0.77846 0.85821 1.90526 1.54964 1.51856 1.43361 1.19970 0.92964 1.02811 0.96158 1.21501 0.99639 0.93971 0.92633 1.20824 0.95977 1.00400 0.97277 1.21128 0.92853 0.96685 0.97999 1.19008 0.95764 1.02032 0.95338 1.23111 0.87869 0.95072 0.97620 1.67370 1.40245 1.09574 1.02467 1.22312 0.94976 0.96691 0.93723 1.22990 0.93112 0.98200 1.02143 1.17927 0.92630 0.95433 0.93449 1.22592 0.99912 0.97178 0.96420 1.23141 0.99466 1.03463 0.95909 1.22790 1.03671 0.91672 1.03069 0.90511 0.90599 0.92809 0.95526 0.94400 0.78466 0.93696 0.76935 0.85069 0.84927 0.84718 0.82161 0.83024 0.80575 0.86539 0.89175 0.88190 0.89289 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 7.04 37.16 0.26 -1.92 16 2 C 0.20 3.17 0.54 -131.82 -0.07 3.10 16 3 C 0.15 3.03 5.02 -4.04 -0.02 3.01 16 4 N -0.73 -17.95 5.17 -59.91 -0.31 -18.26 16 5 C -0.23 -6.52 9.99 -15.06 -0.15 -6.67 16 6 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 8 N -0.94 -27.78 13.06 55.49 0.72 -27.05 16 9 Si 0.90 22.75 29.55 -169.99 -5.02 17.72 16 10 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 N -0.70 -10.60 4.66 -48.66 -0.23 -10.83 16 14 C 0.57 9.58 7.14 -12.51 -0.09 9.49 16 15 O -0.53 -9.84 10.31 5.27 0.05 -9.79 16 16 C -0.12 -1.76 5.90 -104.70 -0.62 -2.38 16 17 C -0.06 -0.70 9.52 -39.11 -0.37 -1.07 16 18 C -0.13 -1.30 9.92 -40.01 -0.40 -1.70 16 19 C -0.07 -0.68 9.79 -39.44 -0.39 -1.07 16 20 C -0.12 -1.56 5.74 -106.88 -0.61 -2.17 16 21 C 0.14 1.66 11.05 -16.95 -0.19 1.47 16 22 N -0.49 -6.97 10.30 -13.11 -0.14 -7.10 16 23 C 0.07 0.94 11.07 -17.93 -0.20 0.74 16 24 C -0.15 -2.30 9.28 -39.50 -0.37 -2.66 16 25 C 0.01 0.18 5.77 -106.55 -0.61 -0.44 16 26 C -0.14 -2.02 4.04 -90.62 -0.37 -2.39 16 27 C -0.18 -2.14 9.61 -26.73 -0.26 -2.40 16 28 C -0.17 -2.08 9.81 -26.73 -0.26 -2.34 16 29 H 0.08 1.05 6.84 -51.93 -0.36 0.70 16 30 H 0.08 1.23 6.86 -51.93 -0.36 0.87 16 31 H 0.05 0.61 7.02 -51.93 -0.36 0.25 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.04 0.87 6.65 -51.93 -0.35 0.53 16 34 H 0.38 9.58 6.35 -40.82 -0.26 9.32 16 35 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.40 5.14 6.54 -40.82 -0.27 4.87 16 37 H 0.13 1.31 6.41 -52.48 -0.34 0.98 16 38 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 39 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 40 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.18 2.99 5.06 -52.48 -0.27 2.72 16 43 H 0.12 1.90 7.17 -51.92 -0.37 1.52 16 44 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.10 1.11 5.87 -51.93 -0.30 0.80 16 46 H 0.09 1.00 7.43 -51.93 -0.39 0.61 16 47 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 376.11 15.07 5.67 5.67 Total: -1.00 -33.54 376.11 -10.17 -43.71 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -6.12 Total: 15.84 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -4.80 Total: -9.91 kcal Atomic # 7 Polarization: -63.29 SS G_CDS: 0.05 Total: -63.24 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.05 Total: -9.79 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.54 -10.17 -43.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481952329.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.154 kcal (2) G-P(sol) polarization free energy of solvation -33.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds