Wall clock time and date at job start Tue Mar 31 2020 22:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52991 * 109.47544 * 2 1 4 4 N 1.46498 * 109.47459 * 180.02562 * 3 2 1 5 5 C 1.36938 * 120.00120 * 180.02562 * 4 3 2 6 6 H 1.08002 * 120.00033 * 359.97438 * 5 4 3 7 7 C 1.38807 * 120.00096 * 179.97438 * 5 4 3 8 8 N 1.31621 * 119.99944 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00132 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47013 * 60.00385 * 9 7 5 11 11 H 1.48499 * 109.47123 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47124 * 300.00410 * 9 7 5 13 13 N 1.46505 * 109.47140 * 120.00186 * 2 1 3 14 14 C 1.34770 * 119.99819 * 294.94956 * 13 2 1 15 15 O 1.21599 * 120.00157 * 5.18764 * 14 13 2 16 16 C 1.47448 * 119.99871 * 185.19387 * 14 13 2 17 17 C 1.38864 * 120.46126 * 354.19464 * 16 14 13 18 18 C 1.38905 * 120.67376 * 179.71933 * 17 16 14 19 19 C 1.36367 * 121.27464 * 0.56132 * 18 17 16 20 20 C 1.40399 * 119.98466 * 359.72018 * 19 18 17 21 21 C 1.40464 * 121.95086 * 179.97438 * 20 19 18 22 22 N 1.31282 * 119.88577 * 180.02562 * 21 20 19 23 23 C 1.32555 * 122.72507 * 359.97438 * 22 21 20 24 24 C 1.36324 * 121.82674 * 0.02562 * 23 22 21 25 25 C 1.40292 * 118.69932 * 359.97438 * 24 23 22 26 26 C 1.53003 * 109.46781 * 239.99668 * 2 1 3 27 27 C 1.53005 * 117.52008 * 225.37030 * 26 2 1 28 28 C 1.52993 * 117.50253 * 294.00177 * 26 2 1 29 29 H 1.08998 * 109.47523 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47201 * 299.99941 * 1 2 3 31 31 H 1.08995 * 109.47299 * 59.99793 * 1 2 3 32 32 H 1.09004 * 109.47080 * 300.00231 * 3 2 1 33 33 H 1.09007 * 109.47200 * 60.00009 * 3 2 1 34 34 H 0.96997 * 119.99691 * 359.97438 * 4 3 2 35 35 H 0.97001 * 120.00154 * 179.97438 * 8 7 5 36 36 H 0.96999 * 120.00082 * 114.94624 * 13 2 1 37 37 H 1.07998 * 119.66183 * 359.97124 * 17 16 14 38 38 H 1.08003 * 119.35685 * 180.27925 * 18 17 16 39 39 H 1.08005 * 120.00883 * 179.70357 * 19 18 17 40 40 H 1.07999 * 120.05915 * 359.97438 * 21 20 19 41 41 H 1.08001 * 119.08259 * 180.02562 * 23 22 21 42 42 H 1.08000 * 120.65086 * 180.02562 * 24 23 22 43 43 H 1.09007 * 115.54446 * 79.67424 * 26 2 1 44 44 H 1.09001 * 117.49821 * 214.97648 * 27 26 2 45 45 H 1.08998 * 117.49469 * 359.97438 * 27 26 2 46 46 H 1.09003 * 117.50116 * 359.97438 * 28 26 2 47 47 H 1.08999 * 117.50106 * 144.99765 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1898 2.6282 -0.0002 6 1 3.6498 3.5636 0.0002 7 6 5.5778 2.6282 -0.0002 8 7 6.2359 1.4883 -0.0012 9 14 6.5119 4.2459 -0.0004 10 1 6.1533 5.0246 1.2121 11 1 7.9719 3.9745 -0.0011 12 1 6.1531 5.0246 -1.2129 13 7 2.0183 -0.6907 1.1962 14 6 1.7788 -0.1739 2.4176 15 8 1.0780 0.8130 2.5335 16 6 2.3665 -0.8053 3.6134 17 6 3.0679 -1.9990 3.5065 18 6 3.6283 -2.5947 4.6292 19 6 3.4988 -2.0357 5.8663 20 6 2.7930 -0.8321 6.0220 21 6 2.6339 -0.2206 7.2765 22 7 1.9653 0.9049 7.3755 23 6 1.4202 1.5090 6.3292 24 6 1.5190 0.9953 5.0703 25 6 2.2195 -0.2063 4.8861 26 6 2.0399 -0.7213 -1.2492 27 6 3.1743 -1.7321 -1.0685 28 6 1.7549 -2.2200 -1.3655 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.9900 0.6023 -0.0006 35 1 7.2059 1.4883 -0.0016 36 1 2.5140 -1.5199 1.1091 37 1 3.1822 -2.4670 2.5398 38 1 4.1733 -3.5208 4.5209 39 1 3.9389 -2.5189 6.7261 40 1 3.0601 -0.6760 8.1582 41 1 0.8827 2.4339 6.4781 42 1 1.0677 1.5037 4.2311 43 1 2.0303 -0.1344 -2.1678 44 1 3.9110 -1.8101 -1.8680 45 1 3.5578 -1.8829 -0.0594 46 1 1.2045 -2.6923 -0.5518 47 1 1.5579 -2.6192 -2.3604 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481952334.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:27 Heat of formation + Delta-G solvation = 74.674912 kcal Electronic energy + Delta-G solvation = -30151.094780 eV Core-core repulsion = 26300.565156 eV Total energy + Delta-G solvation = -3850.529624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.08545 -39.96135 -37.82323 -37.06783 -34.54989 -33.49859 -32.87757 -31.80280 -30.90530 -30.08722 -29.28230 -25.73163 -24.70401 -23.75197 -23.35114 -22.98385 -22.21054 -22.00308 -20.69567 -19.05765 -18.21011 -17.81478 -17.04760 -16.55497 -16.29004 -15.50734 -15.30845 -14.83993 -14.76581 -14.62447 -14.46511 -14.00898 -13.82388 -13.57475 -13.40203 -13.27031 -12.72932 -12.59271 -12.39143 -12.19068 -12.13284 -12.00383 -11.69146 -11.63164 -11.43618 -11.29391 -10.88511 -10.77511 -10.73702 -10.15148 -10.10097 -9.94935 -9.94300 -9.69944 -9.60550 -9.14671 -9.08422 -8.75525 -8.65194 -8.05504 -6.80926 -5.71270 -2.96823 0.13574 0.87722 1.73595 2.75682 3.24965 3.47155 3.51211 3.52067 3.52995 4.00272 4.16375 4.45232 4.51839 4.59335 4.64216 4.68954 4.77960 4.87594 4.95167 5.05832 5.07770 5.08168 5.28555 5.37313 5.54604 5.60750 5.64218 5.67273 5.74229 5.74841 5.86382 5.90179 5.94898 6.02862 6.13466 6.16367 6.16760 6.27733 6.32093 6.34906 6.38804 6.54953 6.56878 6.65713 6.78465 6.90771 7.09850 7.75332 7.78046 8.00673 8.48644 8.50113 9.60530 10.19266 10.56066 11.51812 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008465 B = 0.004701 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3306.810686 B = 5954.683692 C = 7448.491345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.199 3.801 3 C 0.140 3.860 4 N -0.725 5.725 5 C -0.230 4.230 6 H 0.067 0.933 7 C -0.015 4.015 8 N -0.935 5.935 9 Si 0.903 3.097 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 N -0.708 5.708 14 C 0.571 3.429 15 O -0.525 6.525 16 C -0.115 4.115 17 C -0.060 4.060 18 C -0.127 4.127 19 C -0.066 4.066 20 C -0.119 4.119 21 C 0.135 3.865 22 N -0.488 5.488 23 C 0.066 3.934 24 C -0.145 4.145 25 C 0.012 3.988 26 C -0.137 4.137 27 C -0.169 4.169 28 C -0.189 4.189 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.023 0.977 33 H 0.050 0.950 34 H 0.384 0.616 35 H 0.253 0.747 36 H 0.394 0.606 37 H 0.128 0.872 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.161 0.839 41 H 0.153 0.847 42 H 0.178 0.822 43 H 0.117 0.883 44 H 0.100 0.900 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.545 -13.018 7.011 17.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.114 3.886 3 C 0.012 3.988 4 N -0.369 5.369 5 C -0.362 4.362 6 H 0.085 0.915 7 C -0.210 4.210 8 N -0.585 5.585 9 Si 0.735 3.265 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.214 1.214 13 N -0.361 5.361 14 C 0.359 3.641 15 O -0.403 6.403 16 C -0.118 4.118 17 C -0.080 4.080 18 C -0.145 4.145 19 C -0.086 4.086 20 C -0.121 4.121 21 C -0.037 4.037 22 N -0.196 5.196 23 C -0.076 4.076 24 C -0.163 4.163 25 C 0.006 3.994 26 C -0.155 4.155 27 C -0.206 4.206 28 C -0.226 4.226 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.068 0.932 34 H 0.218 0.782 35 H 0.063 0.937 36 H 0.233 0.767 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.178 0.822 41 H 0.170 0.830 42 H 0.195 0.805 43 H 0.135 0.865 44 H 0.119 0.881 45 H 0.109 0.891 46 H 0.108 0.892 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.184 -11.605 7.802 17.299 hybrid contribution 1.445 -0.188 -0.995 1.765 sum -8.739 -11.793 6.807 16.180 Atomic orbital electron populations 1.22093 0.94064 1.01708 1.03340 1.20132 0.93352 0.93338 0.81787 1.21126 0.86727 0.91355 0.99568 1.42213 0.99055 1.06292 1.89356 1.19185 0.89011 0.86218 1.41744 0.91485 1.24652 0.96289 0.96593 1.03492 1.69637 1.06605 1.23776 1.58467 0.86316 0.78961 0.83433 0.77822 1.21434 1.21794 1.21372 1.46100 1.57483 1.27181 1.05355 1.17777 0.80156 0.83409 0.82751 1.90514 1.38566 1.25774 1.85484 1.19967 1.02042 0.96467 0.93299 1.21460 0.93663 0.93742 0.99145 1.20806 1.00515 1.00914 0.92266 1.21122 0.95823 0.93557 0.98091 1.19006 1.01087 0.97199 0.94783 1.23108 0.94242 0.91095 0.95271 1.67372 1.08383 1.09276 1.34546 1.22316 0.97613 0.99454 0.88249 1.22999 0.97659 0.95154 1.00521 1.17924 0.95412 0.94476 0.91588 1.22414 1.02953 0.90906 0.99255 1.22900 0.91512 1.03275 1.02901 1.23036 0.99595 0.97300 1.02664 0.92932 0.90557 0.91749 0.95886 0.93219 0.78163 0.93746 0.76720 0.85382 0.84929 0.84685 0.82151 0.82971 0.80522 0.86464 0.88143 0.89060 0.89201 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.37 37.16 0.31 -1.85 16 2 C 0.20 3.21 0.52 -131.82 -0.07 3.14 16 3 C 0.14 2.94 4.89 -4.05 -0.02 2.92 16 4 N -0.72 -18.23 5.22 -59.91 -0.31 -18.54 16 5 C -0.23 -6.57 9.99 -15.06 -0.15 -6.72 16 6 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 7 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 8 N -0.94 -28.10 13.06 55.49 0.72 -27.38 16 9 Si 0.90 23.02 29.55 -169.99 -5.02 18.00 16 10 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 11 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 13 N -0.71 -10.95 4.44 -48.67 -0.22 -11.16 16 14 C 0.57 9.83 7.14 -12.51 -0.09 9.74 16 15 O -0.52 -10.06 9.73 5.28 0.05 -10.01 16 16 C -0.11 -1.79 5.90 -104.70 -0.62 -2.41 16 17 C -0.06 -0.74 9.52 -39.10 -0.37 -1.12 16 18 C -0.13 -1.31 9.92 -40.01 -0.40 -1.71 16 19 C -0.07 -0.68 9.78 -39.44 -0.39 -1.07 16 20 C -0.12 -1.58 5.74 -106.88 -0.61 -2.19 16 21 C 0.13 1.68 11.05 -16.95 -0.19 1.49 16 22 N -0.49 -7.10 10.30 -13.11 -0.14 -7.23 16 23 C 0.07 0.98 11.07 -17.93 -0.20 0.78 16 24 C -0.14 -2.35 9.28 -39.50 -0.37 -2.71 16 25 C 0.01 0.19 5.77 -106.55 -0.61 -0.43 16 26 C -0.14 -2.00 4.48 -90.62 -0.41 -2.41 16 27 C -0.17 -2.34 8.98 -26.73 -0.24 -2.58 16 28 C -0.19 -2.15 9.53 -26.73 -0.25 -2.40 16 29 H 0.05 0.65 7.72 -51.93 -0.40 0.25 16 30 H 0.08 1.19 6.37 -51.93 -0.33 0.86 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 1.15 5.99 -51.93 -0.31 0.84 16 34 H 0.38 9.83 6.43 -40.82 -0.26 9.56 16 35 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.39 5.30 3.70 -40.82 -0.15 5.15 16 37 H 0.13 1.31 6.41 -52.49 -0.34 0.97 16 38 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 39 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 40 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 42 H 0.18 3.09 5.06 -52.49 -0.27 2.83 16 43 H 0.12 1.81 8.14 -51.92 -0.42 1.39 16 44 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 45 H 0.09 1.27 5.96 -51.93 -0.31 0.96 16 46 H 0.09 0.93 8.00 -51.93 -0.42 0.52 16 47 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 375.76 15.07 5.66 5.66 Total: -1.00 -33.96 375.76 -10.15 -44.11 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -6.13 Total: 16.58 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -4.77 Total: -10.03 kcal Atomic # 7 Polarization: -64.38 SS G_CDS: 0.06 Total: -64.31 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.05 Total: -10.01 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.96 -10.15 -44.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481952334.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.789 kcal (2) G-P(sol) polarization free energy of solvation -33.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds