Wall clock time and date at job start Tue Mar 31 2020 22:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52991 * 109.47544 * 2 1 4 4 N 1.46498 * 109.47459 * 180.02562 * 3 2 1 5 5 C 1.36938 * 120.00120 * 180.02562 * 4 3 2 6 6 H 1.08002 * 120.00033 * 359.97438 * 5 4 3 7 7 C 1.38807 * 120.00096 * 179.97438 * 5 4 3 8 8 N 1.31621 * 119.99944 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00132 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47013 * 60.00385 * 9 7 5 11 11 H 1.48499 * 109.47123 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47124 * 300.00410 * 9 7 5 13 13 N 1.46505 * 109.47140 * 120.00186 * 2 1 3 14 14 C 1.34770 * 119.99819 * 294.94956 * 13 2 1 15 15 O 1.21599 * 120.00157 * 5.18764 * 14 13 2 16 16 C 1.47448 * 119.99871 * 185.19387 * 14 13 2 17 17 C 1.38864 * 120.46126 * 354.19464 * 16 14 13 18 18 C 1.38905 * 120.67376 * 179.71933 * 17 16 14 19 19 C 1.36367 * 121.27464 * 0.56132 * 18 17 16 20 20 C 1.40399 * 119.98466 * 359.72018 * 19 18 17 21 21 C 1.40464 * 121.95086 * 179.97438 * 20 19 18 22 22 N 1.31282 * 119.88577 * 180.02562 * 21 20 19 23 23 C 1.32555 * 122.72507 * 359.97438 * 22 21 20 24 24 C 1.36324 * 121.82674 * 0.02562 * 23 22 21 25 25 C 1.40292 * 118.69932 * 359.97438 * 24 23 22 26 26 C 1.53003 * 109.46781 * 239.99668 * 2 1 3 27 27 C 1.53005 * 117.52008 * 225.37030 * 26 2 1 28 28 C 1.52993 * 117.50253 * 294.00177 * 26 2 1 29 29 H 1.08998 * 109.47523 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47201 * 299.99941 * 1 2 3 31 31 H 1.08995 * 109.47299 * 59.99793 * 1 2 3 32 32 H 1.09004 * 109.47080 * 300.00231 * 3 2 1 33 33 H 1.09007 * 109.47200 * 60.00009 * 3 2 1 34 34 H 0.96997 * 119.99691 * 359.97438 * 4 3 2 35 35 H 0.97001 * 120.00154 * 179.97438 * 8 7 5 36 36 H 0.96999 * 120.00082 * 114.94624 * 13 2 1 37 37 H 1.07998 * 119.66183 * 359.97124 * 17 16 14 38 38 H 1.08003 * 119.35685 * 180.27925 * 18 17 16 39 39 H 1.08005 * 120.00883 * 179.70357 * 19 18 17 40 40 H 1.07999 * 120.05915 * 359.97438 * 21 20 19 41 41 H 1.08001 * 119.08259 * 180.02562 * 23 22 21 42 42 H 1.08000 * 120.65086 * 180.02562 * 24 23 22 43 43 H 1.09007 * 115.54446 * 79.67424 * 26 2 1 44 44 H 1.09001 * 117.49821 * 214.97648 * 27 26 2 45 45 H 1.08998 * 117.49469 * 359.97438 * 27 26 2 46 46 H 1.09003 * 117.50116 * 359.97438 * 28 26 2 47 47 H 1.08999 * 117.50106 * 144.99765 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1898 2.6282 -0.0002 6 1 3.6498 3.5636 0.0002 7 6 5.5778 2.6282 -0.0002 8 7 6.2359 1.4883 -0.0012 9 14 6.5119 4.2459 -0.0004 10 1 6.1533 5.0246 1.2121 11 1 7.9719 3.9745 -0.0011 12 1 6.1531 5.0246 -1.2129 13 7 2.0183 -0.6907 1.1962 14 6 1.7788 -0.1739 2.4176 15 8 1.0780 0.8130 2.5335 16 6 2.3665 -0.8053 3.6134 17 6 3.0679 -1.9990 3.5065 18 6 3.6283 -2.5947 4.6292 19 6 3.4988 -2.0357 5.8663 20 6 2.7930 -0.8321 6.0220 21 6 2.6339 -0.2206 7.2765 22 7 1.9653 0.9049 7.3755 23 6 1.4202 1.5090 6.3292 24 6 1.5190 0.9953 5.0703 25 6 2.2195 -0.2063 4.8861 26 6 2.0399 -0.7213 -1.2492 27 6 3.1743 -1.7321 -1.0685 28 6 1.7549 -2.2200 -1.3655 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.9900 0.6023 -0.0006 35 1 7.2059 1.4883 -0.0016 36 1 2.5140 -1.5199 1.1091 37 1 3.1822 -2.4670 2.5398 38 1 4.1733 -3.5208 4.5209 39 1 3.9389 -2.5189 6.7261 40 1 3.0601 -0.6760 8.1582 41 1 0.8827 2.4339 6.4781 42 1 1.0677 1.5037 4.2311 43 1 2.0303 -0.1344 -2.1678 44 1 3.9110 -1.8101 -1.8680 45 1 3.5578 -1.8829 -0.0594 46 1 1.2045 -2.6923 -0.5518 47 1 1.5579 -2.6192 -2.3604 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481952334.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:26 Heat of formation + Delta-G solvation = 53.410180 kcal Electronic energy + Delta-G solvation = -30152.016888 eV Core-core repulsion = 26300.565156 eV Total energy + Delta-G solvation = -3851.451732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.18156 -41.14841 -39.00671 -38.09552 -36.28664 -34.95615 -33.97591 -33.29065 -32.18693 -31.58547 -30.38375 -27.49693 -25.76735 -25.04030 -24.47347 -24.30300 -23.72961 -23.14806 -21.81346 -20.38035 -19.29848 -19.20992 -18.76199 -17.58220 -17.34087 -17.00190 -16.41018 -16.33412 -16.09977 -15.86872 -15.67314 -15.36668 -15.18356 -14.98393 -14.76933 -14.42475 -14.05446 -13.95659 -13.77006 -13.53724 -13.33174 -13.04847 -12.95015 -12.85907 -12.77673 -12.66814 -12.51847 -12.31803 -12.21912 -12.03083 -11.80315 -11.16487 -11.14221 -11.04774 -10.98968 -10.74639 -10.21224 -10.14596 -9.98112 -9.08633 -8.92330 -7.95436 -5.20269 -0.85794 -0.12868 0.65801 1.41253 1.43866 1.49616 1.74178 2.06998 2.34775 2.53482 2.93104 3.11261 3.36110 3.49851 3.50210 3.63028 3.65303 3.79111 3.81094 3.91977 3.94567 3.98990 4.09352 4.19259 4.29574 4.39873 4.52109 4.57724 4.65944 4.69634 4.75504 4.82011 4.86650 4.88503 4.93739 4.97007 5.05889 5.07940 5.18472 5.24049 5.26968 5.29330 5.34800 5.38381 5.46254 5.63051 5.71934 5.80226 6.27583 6.55593 6.95460 7.26227 7.35635 8.11541 8.42426 9.27188 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008465 B = 0.004701 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3306.810686 B = 5954.683692 C = 7448.491345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.207 3.793 3 C 0.140 3.860 4 N -0.727 5.727 5 C -0.244 4.244 6 H 0.060 0.940 7 C -0.066 4.066 8 N -0.959 5.959 9 Si 0.963 3.037 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.700 5.700 14 C 0.561 3.439 15 O -0.557 6.557 16 C -0.160 4.160 17 C -0.047 4.047 18 C -0.131 4.131 19 C -0.045 4.045 20 C -0.137 4.137 21 C 0.148 3.852 22 N -0.512 5.512 23 C 0.065 3.935 24 C -0.180 4.180 25 C -0.010 4.010 26 C -0.160 4.160 27 C -0.182 4.182 28 C -0.145 4.145 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.019 0.981 33 H 0.023 0.977 34 H 0.381 0.619 35 H 0.251 0.749 36 H 0.404 0.596 37 H 0.147 0.853 38 H 0.175 0.825 39 H 0.184 0.816 40 H 0.207 0.793 41 H 0.163 0.837 42 H 0.152 0.848 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.632 -16.105 7.958 19.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.122 3.878 3 C 0.012 3.988 4 N -0.371 5.371 5 C -0.376 4.376 6 H 0.078 0.922 7 C -0.259 4.259 8 N -0.610 5.610 9 Si 0.793 3.207 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.355 5.355 14 C 0.350 3.650 15 O -0.438 6.438 16 C -0.164 4.164 17 C -0.067 4.067 18 C -0.149 4.149 19 C -0.065 4.065 20 C -0.139 4.139 21 C -0.023 4.023 22 N -0.220 5.220 23 C -0.077 4.077 24 C -0.199 4.199 25 C -0.016 4.016 26 C -0.179 4.179 27 C -0.219 4.219 28 C -0.181 4.181 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.037 0.963 33 H 0.041 0.959 34 H 0.215 0.785 35 H 0.059 0.941 36 H 0.245 0.755 37 H 0.165 0.835 38 H 0.192 0.808 39 H 0.201 0.799 40 H 0.223 0.777 41 H 0.180 0.820 42 H 0.169 0.831 43 H 0.123 0.877 44 H 0.111 0.889 45 H 0.107 0.893 46 H 0.126 0.874 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.297 -14.703 8.732 19.465 hybrid contribution 1.180 0.717 -1.229 1.848 sum -8.118 -13.986 7.503 17.827 Atomic orbital electron populations 1.22012 0.92407 1.03128 1.02761 1.19935 0.94443 0.90495 0.82965 1.21173 0.84566 0.95143 0.97891 1.42256 1.00609 1.05176 1.89035 1.19487 0.89699 0.87216 1.41231 0.92181 1.25351 0.96995 0.99676 1.03912 1.69763 1.06481 1.25305 1.59456 0.85372 0.77588 0.79955 0.77819 1.21563 1.21496 1.20409 1.46012 1.57395 1.27339 1.04711 1.18262 0.79823 0.83180 0.83733 1.90506 1.40030 1.27222 1.86060 1.19953 1.05240 0.98638 0.92527 1.21864 0.91547 0.92163 1.01149 1.21307 1.00092 1.02135 0.91341 1.21692 0.93292 0.91635 0.99866 1.19351 1.01815 0.98611 0.94151 1.23902 0.92070 0.89883 0.96468 1.67464 1.09872 1.10656 1.34041 1.22474 0.97414 0.99824 0.87991 1.22829 1.00029 0.96660 1.00410 1.18217 0.95820 0.94575 0.92944 1.22293 1.04955 0.92787 0.97820 1.22916 0.92591 1.03826 1.02614 1.23110 0.96868 0.93747 1.04419 0.90389 0.92708 0.90757 0.96270 0.95863 0.78485 0.94058 0.75536 0.83499 0.80753 0.79924 0.77669 0.81954 0.83102 0.87655 0.88884 0.89311 0.87399 0.86706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.09 8.37 71.98 0.60 -3.49 16 2 C 0.21 6.83 0.52 3.60 0.00 6.83 16 3 C 0.14 6.20 4.89 86.38 0.42 6.62 16 4 N -0.73 -38.05 5.22 -343.46 -1.79 -39.84 16 5 C -0.24 -14.39 9.99 84.03 0.84 -13.55 16 6 H 0.06 3.54 7.83 -2.91 -0.02 3.52 16 7 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 8 N -0.96 -58.38 13.06 21.65 0.28 -58.10 16 9 Si 0.96 48.04 29.55 68.60 2.03 50.07 16 10 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 11 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 12 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 13 N -0.70 -22.06 4.44 -426.14 -1.89 -23.95 16 14 C 0.56 20.37 7.14 86.67 0.62 20.99 16 15 O -0.56 -23.41 9.73 -4.03 -0.04 -23.45 16 16 C -0.16 -5.12 5.90 -19.92 -0.12 -5.23 16 17 C -0.05 -1.09 9.52 22.58 0.22 -0.87 16 18 C -0.13 -2.18 9.92 21.99 0.22 -1.96 16 19 C -0.05 -0.75 9.78 22.36 0.22 -0.53 16 20 C -0.14 -3.41 5.74 -21.33 -0.12 -3.53 16 21 C 0.15 3.37 11.05 85.32 0.94 4.32 16 22 N -0.51 -14.72 10.30 -195.40 -2.01 -16.73 16 23 C 0.06 2.02 11.07 84.14 0.93 2.96 16 24 C -0.18 -6.37 9.28 22.32 0.21 -6.16 16 25 C -0.01 -0.32 5.77 -21.11 -0.12 -0.44 16 26 C -0.16 -4.60 4.48 -10.79 -0.05 -4.64 16 27 C -0.18 -4.87 8.98 30.60 0.27 -4.60 16 28 C -0.14 -2.88 9.53 30.59 0.29 -2.59 16 29 H 0.08 1.79 7.72 -2.39 -0.02 1.78 16 30 H 0.05 1.80 6.37 -2.39 -0.02 1.79 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.02 1.17 5.99 -2.38 -0.01 1.16 16 34 H 0.38 20.13 6.43 -92.71 -0.60 19.53 16 35 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 36 H 0.40 10.63 3.70 -92.71 -0.34 10.28 16 37 H 0.15 2.66 6.41 -2.91 -0.02 2.64 16 38 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 39 H 0.18 1.26 8.06 -2.91 -0.02 1.23 16 40 H 0.21 2.59 8.06 -2.91 -0.02 2.57 16 41 H 0.16 4.38 8.06 -2.91 -0.02 4.35 16 42 H 0.15 6.04 5.06 -2.91 -0.01 6.02 16 43 H 0.11 3.27 8.14 -2.38 -0.02 3.26 16 44 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 45 H 0.09 2.39 5.96 -2.39 -0.01 2.38 16 46 H 0.11 1.81 8.00 -2.39 -0.02 1.80 16 47 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -78.67 375.76 2.50 -76.17 By element: Atomic # 1 Polarization: 45.10 SS G_CDS: 0.08 Total: 45.18 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 5.84 Total: -9.36 kcal Atomic # 7 Polarization: -133.20 SS G_CDS: -5.42 Total: -138.62 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.04 Total: -23.45 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.07 kcal Total: -78.67 2.50 -76.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481952334.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.583 kcal (2) G-P(sol) polarization free energy of solvation -78.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds