Wall clock time and date at job start Tue Mar 31 2020 22:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30500 * 125.64510 * 2 1 4 4 C 1.34136 * 109.25307 * 180.29346 * 3 2 1 5 5 C 1.34672 * 108.01864 * 359.72564 * 4 3 2 6 6 N 1.35036 * 125.65400 * 179.82750 * 2 1 3 7 7 C 1.46509 * 126.39595 * 359.97438 * 6 2 1 8 8 C 1.50698 * 109.47002 * 84.71084 * 7 6 2 9 9 O 1.21283 * 120.00472 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99538 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72653 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 H 1.08998 * 109.46700 * 305.00136 * 12 11 10 14 14 O 1.42903 * 109.46927 * 64.99809 * 12 11 10 15 15 C 1.52998 * 109.47023 * 185.00121 * 12 11 10 16 16 N 1.46904 * 109.46987 * 180.02562 * 15 12 11 17 17 C 1.46901 * 111.00319 * 180.02562 * 16 15 12 18 18 C 1.50698 * 109.47394 * 179.97438 * 17 16 15 19 19 O 1.21296 * 119.99732 * 359.97438 * 18 17 16 20 20 N 1.34770 * 119.99967 * 180.02562 * 18 17 16 21 21 C 1.37098 * 119.99971 * 179.97438 * 20 18 17 22 22 H 1.07998 * 120.00103 * 359.97438 * 21 20 18 23 23 C 1.38956 * 120.00051 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00016 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99871 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46912 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.46851 * 119.99820 * 25 23 21 28 28 H 1.48500 * 109.46726 * 239.99844 * 25 23 21 29 29 H 1.09000 * 109.47062 * 270.17125 * 1 2 3 30 30 H 1.09004 * 109.47349 * 30.17440 * 1 2 3 31 31 H 1.09005 * 109.47236 * 150.17377 * 1 2 3 32 32 H 1.08000 * 125.99123 * 179.73413 * 4 3 2 33 33 H 1.07999 * 126.59267 * 179.97438 * 5 4 3 34 34 H 1.09003 * 109.46564 * 324.71512 * 7 6 2 35 35 H 1.08993 * 109.46901 * 204.71847 * 7 6 2 36 36 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 37 37 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 38 38 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 39 39 H 0.96706 * 113.99936 * 60.00707 * 14 12 11 40 40 H 1.09005 * 109.47209 * 299.99293 * 15 12 11 41 41 H 1.08991 * 109.47437 * 59.99960 * 15 12 11 42 42 H 1.00905 * 110.99741 * 303.95159 * 16 15 12 43 43 H 1.09006 * 109.46564 * 299.99769 * 17 16 15 44 44 H 1.08998 * 109.46901 * 59.99071 * 17 16 15 45 45 H 0.97004 * 120.00210 * 359.97438 * 20 18 17 46 46 H 0.96997 * 119.99821 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6820 -0.0065 5 6 3.5926 -0.6642 -0.0045 6 7 2.2941 -1.0972 0.0033 7 6 1.8426 -2.4910 0.0080 8 6 1.5627 -2.9331 -1.4052 9 8 1.7248 -2.1604 -2.3258 10 7 1.1331 -4.1877 -1.6461 11 6 0.8552 -4.6156 -3.0194 12 6 0.3789 -6.0696 -3.0140 13 1 1.1158 -6.6914 -2.5056 14 8 -0.8725 -6.1583 -2.3298 15 6 0.2082 -6.5557 -4.4546 16 7 -0.2497 -7.9515 -4.4494 17 6 -0.4244 -8.4535 -5.8189 18 6 -0.8931 -9.8850 -5.7734 19 8 -1.0642 -10.4334 -4.7051 20 7 -1.1210 -10.5562 -6.9196 21 6 -1.5469 -11.8587 -6.8782 22 1 -1.6993 -12.3470 -5.9270 23 6 -1.7824 -12.5506 -8.0600 24 7 -1.5975 -11.9563 -9.2174 25 14 -2.3634 -14.3251 -8.0035 26 1 -2.4940 -14.7583 -6.5891 27 1 -3.6809 -14.4363 -8.6795 28 1 -1.3764 -15.1913 -8.6969 29 1 -0.3633 0.0031 1.0277 30 1 -0.3634 0.8884 -0.5165 31 1 -0.3634 -0.8916 -0.5111 32 1 4.4098 1.3412 -0.0121 33 1 4.4776 -1.2831 -0.0088 34 1 0.9328 -2.5761 0.6023 35 1 2.6188 -3.1229 0.4395 36 1 1.0038 -4.8059 -0.9099 37 1 0.0796 -3.9808 -3.4480 38 1 1.7633 -4.5331 -3.6165 39 1 -1.5769 -5.6289 -2.7280 40 1 -0.5288 -5.9339 -4.9630 41 1 1.1627 -6.4880 -4.9765 42 1 0.3844 -8.5381 -3.9278 43 1 -1.1652 -7.8445 -6.3372 44 1 0.5260 -8.3993 -6.3497 45 1 -0.9838 -10.1177 -7.7740 46 1 -1.7616 -12.4394 -10.0423 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482792834.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:30 Heat of formation + Delta-G solvation = -54.170537 kcal Electronic energy + Delta-G solvation = -27856.107084 eV Core-core repulsion = 23589.141039 eV Total energy + Delta-G solvation = -4266.966045 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.50090 -40.19292 -38.59574 -37.93444 -35.13058 -34.66958 -34.42656 -33.83191 -32.08470 -31.29063 -30.70356 -28.72404 -27.26450 -26.77506 -24.89421 -23.32709 -22.12360 -21.79546 -21.36087 -20.09977 -19.30830 -18.21289 -17.94422 -17.70351 -17.07722 -16.66207 -16.02596 -15.79419 -15.74690 -15.30119 -15.12125 -14.76469 -14.59192 -14.47849 -14.13820 -14.00804 -13.80285 -13.52894 -13.40122 -13.35185 -13.02729 -12.98519 -12.71900 -12.59765 -12.51175 -11.95280 -11.61748 -11.54597 -11.27915 -11.08738 -10.86591 -10.37438 -10.36015 -10.28988 -10.25146 -9.85646 -9.67507 -9.55614 -8.64847 -8.51985 -8.14196 -8.00019 -6.45408 -3.86343 1.56287 1.94204 2.15623 2.68960 2.87310 3.13730 3.24594 3.31766 3.82262 3.87216 4.00849 4.04290 4.14409 4.16084 4.21142 4.34502 4.39817 4.55673 4.67332 4.80544 4.91239 5.01944 5.09421 5.13824 5.17372 5.23401 5.23987 5.39092 5.42155 5.52648 5.68594 5.71481 5.80652 5.89094 5.89213 6.20018 6.42786 6.71756 6.89296 7.05457 7.39273 7.52048 7.55558 7.57512 7.79224 8.02590 8.57120 9.14295 9.50154 10.01370 10.72347 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.044075 B = 0.001384 C = 0.001376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.124345 B =20226.083470 C =20344.805182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.220 3.780 3 N -0.492 5.492 4 C -0.025 4.025 5 C -0.053 4.053 6 N -0.444 5.444 7 C 0.085 3.915 8 C 0.493 3.507 9 O -0.519 6.519 10 N -0.717 5.717 11 C 0.088 3.912 12 C 0.102 3.898 13 H 0.104 0.896 14 O -0.542 6.542 15 C 0.029 3.971 16 N -0.657 5.657 17 C 0.050 3.950 18 C 0.440 3.560 19 O -0.582 6.582 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.170 0.830 33 H 0.173 0.827 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.408 0.592 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.376 0.624 40 H 0.078 0.922 41 H 0.038 0.962 42 H 0.350 0.650 43 H 0.086 0.914 44 H 0.043 0.957 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.120 20.895 16.924 28.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.043 4.043 3 N -0.211 5.211 4 C -0.172 4.172 5 C -0.184 4.184 6 N -0.128 5.128 7 C -0.042 4.042 8 C 0.277 3.723 9 O -0.394 6.394 10 N -0.371 5.371 11 C -0.036 4.036 12 C 0.041 3.959 13 H 0.122 0.878 14 O -0.347 6.347 15 C -0.102 4.102 16 N -0.290 5.290 17 C -0.082 4.082 18 C 0.225 3.775 19 O -0.466 6.466 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.122 0.878 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.089 0.911 32 H 0.187 0.813 33 H 0.190 0.810 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.243 0.757 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.224 0.776 40 H 0.096 0.904 41 H 0.056 0.944 42 H 0.170 0.830 43 H 0.104 0.896 44 H 0.061 0.939 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.462 21.442 17.236 28.505 hybrid contribution 0.890 -1.588 -1.184 2.171 sum 8.352 19.854 16.052 26.863 Atomic orbital electron populations 1.20191 0.85062 1.04244 1.03282 1.23270 0.95646 0.81103 1.04234 1.70262 1.02353 1.28026 1.20463 1.22254 0.94787 0.92707 1.07468 1.22642 0.86628 0.97017 1.12139 1.44840 1.06854 1.05742 1.55344 1.21660 1.04458 0.82127 0.95948 1.20750 0.77963 0.82398 0.91231 1.90822 1.50605 1.52682 1.45316 1.45803 1.67926 1.13217 1.10141 1.22138 1.02148 0.96283 0.83047 1.22089 0.87412 0.92988 0.93400 0.87773 1.86628 1.19879 1.72863 1.55319 1.22565 0.99537 0.92274 0.95811 1.59966 1.54336 1.00989 1.13709 1.21695 1.00261 0.96276 0.90015 1.19769 0.85077 0.87535 0.85087 1.90535 1.57041 1.69617 1.29390 1.41869 1.58788 1.12583 1.06774 1.19764 1.41139 0.87432 0.94610 0.87831 1.25270 0.97597 1.00435 0.94622 1.69618 1.49260 1.37900 0.97500 0.85795 0.78172 0.81741 0.78610 1.19188 1.20710 1.20768 0.90071 0.88965 0.91144 0.81267 0.80956 0.85830 0.85765 0.75682 0.90656 0.90340 0.77606 0.90397 0.94390 0.83021 0.89598 0.93904 0.77474 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.04 36.01 0.36 -0.10 16 2 C 0.22 2.19 7.88 -155.42 -1.23 0.96 16 3 N -0.49 -5.96 11.25 -10.82 -0.12 -6.08 16 4 C -0.03 -0.25 11.87 -17.81 -0.21 -0.46 16 5 C -0.05 -0.44 11.58 -16.56 -0.19 -0.63 16 6 N -0.44 -3.65 2.24 -115.19 -0.26 -3.91 16 7 C 0.09 0.39 6.16 -5.19 -0.03 0.35 16 8 C 0.49 3.66 7.90 -10.99 -0.09 3.58 16 9 O -0.52 -6.46 16.42 5.55 0.09 -6.37 16 10 N -0.72 -4.00 5.50 -60.29 -0.33 -4.33 16 11 C 0.09 0.60 5.31 -4.04 -0.02 0.58 16 12 C 0.10 0.79 3.21 -26.73 -0.09 0.70 16 13 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 14 O -0.54 -4.98 13.15 -35.23 -0.46 -5.44 16 15 C 0.03 0.28 5.35 -3.82 -0.02 0.26 16 16 N -0.66 -9.66 5.99 -115.06 -0.69 -10.35 16 17 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 18 C 0.44 10.15 7.82 -10.99 -0.09 10.07 16 19 O -0.58 -15.57 15.78 5.54 0.09 -15.49 16 20 N -0.56 -14.06 5.29 -10.96 -0.06 -14.11 16 21 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 22 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.26 13.05 55.50 0.72 -23.53 16 25 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 26 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.41 7.84 -51.93 -0.41 0.00 16 32 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.12 0.24 7.94 -51.93 -0.41 -0.17 16 35 H 0.12 0.21 8.13 -51.93 -0.42 -0.21 16 36 H 0.41 1.43 8.47 -40.82 -0.35 1.08 16 37 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.38 2.58 9.05 45.56 0.41 2.99 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.35 5.40 8.43 -39.29 -0.33 5.07 16 43 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.39 9.33 7.90 -40.82 -0.32 9.00 16 46 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 400.63 15.07 6.04 6.04 Total: -1.00 -38.50 400.63 -7.87 -46.36 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -5.99 Total: 13.25 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -1.87 Total: 8.19 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: -0.74 Total: -62.31 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.28 Total: -27.30 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -38.50 -7.87 -46.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482792834.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.807 kcal (2) G-P(sol) polarization free energy of solvation -38.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds