Wall clock time and date at job start Tue Mar 31 2020 22:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30500 * 125.64510 * 2 1 4 4 C 1.34136 * 109.25307 * 180.29346 * 3 2 1 5 5 C 1.34672 * 108.01864 * 359.72564 * 4 3 2 6 6 N 1.35036 * 125.65400 * 179.82750 * 2 1 3 7 7 C 1.46509 * 126.39595 * 359.97438 * 6 2 1 8 8 C 1.50698 * 109.47002 * 84.71084 * 7 6 2 9 9 O 1.21283 * 120.00472 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99538 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72653 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 H 1.08998 * 109.46700 * 305.00136 * 12 11 10 14 14 O 1.42903 * 109.46927 * 64.99809 * 12 11 10 15 15 C 1.52998 * 109.47023 * 185.00121 * 12 11 10 16 16 N 1.46904 * 109.46987 * 180.02562 * 15 12 11 17 17 C 1.46901 * 111.00319 * 180.02562 * 16 15 12 18 18 C 1.50698 * 109.47394 * 179.97438 * 17 16 15 19 19 O 1.21296 * 119.99732 * 359.97438 * 18 17 16 20 20 N 1.34770 * 119.99967 * 180.02562 * 18 17 16 21 21 C 1.37098 * 119.99971 * 179.97438 * 20 18 17 22 22 H 1.07998 * 120.00103 * 359.97438 * 21 20 18 23 23 C 1.38956 * 120.00051 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00016 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99871 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46912 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.46851 * 119.99820 * 25 23 21 28 28 H 1.48500 * 109.46726 * 239.99844 * 25 23 21 29 29 H 1.09000 * 109.47062 * 270.17125 * 1 2 3 30 30 H 1.09004 * 109.47349 * 30.17440 * 1 2 3 31 31 H 1.09005 * 109.47236 * 150.17377 * 1 2 3 32 32 H 1.08000 * 125.99123 * 179.73413 * 4 3 2 33 33 H 1.07999 * 126.59267 * 179.97438 * 5 4 3 34 34 H 1.09003 * 109.46564 * 324.71512 * 7 6 2 35 35 H 1.08993 * 109.46901 * 204.71847 * 7 6 2 36 36 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 37 37 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 38 38 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 39 39 H 0.96706 * 113.99936 * 60.00707 * 14 12 11 40 40 H 1.09005 * 109.47209 * 299.99293 * 15 12 11 41 41 H 1.08991 * 109.47437 * 59.99960 * 15 12 11 42 42 H 1.00905 * 110.99741 * 303.95159 * 16 15 12 43 43 H 1.09006 * 109.46564 * 299.99769 * 17 16 15 44 44 H 1.08998 * 109.46901 * 59.99071 * 17 16 15 45 45 H 0.97004 * 120.00210 * 359.97438 * 20 18 17 46 46 H 0.96997 * 119.99821 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6820 -0.0065 5 6 3.5926 -0.6642 -0.0045 6 7 2.2941 -1.0972 0.0033 7 6 1.8426 -2.4910 0.0080 8 6 1.5627 -2.9331 -1.4052 9 8 1.7248 -2.1604 -2.3258 10 7 1.1331 -4.1877 -1.6461 11 6 0.8552 -4.6156 -3.0194 12 6 0.3789 -6.0696 -3.0140 13 1 1.1158 -6.6914 -2.5056 14 8 -0.8725 -6.1583 -2.3298 15 6 0.2082 -6.5557 -4.4546 16 7 -0.2497 -7.9515 -4.4494 17 6 -0.4244 -8.4535 -5.8189 18 6 -0.8931 -9.8850 -5.7734 19 8 -1.0642 -10.4334 -4.7051 20 7 -1.1210 -10.5562 -6.9196 21 6 -1.5469 -11.8587 -6.8782 22 1 -1.6993 -12.3470 -5.9270 23 6 -1.7824 -12.5506 -8.0600 24 7 -1.5975 -11.9563 -9.2174 25 14 -2.3634 -14.3251 -8.0035 26 1 -2.4940 -14.7583 -6.5891 27 1 -3.6809 -14.4363 -8.6795 28 1 -1.3764 -15.1913 -8.6969 29 1 -0.3633 0.0031 1.0277 30 1 -0.3634 0.8884 -0.5165 31 1 -0.3634 -0.8916 -0.5111 32 1 4.4098 1.3412 -0.0121 33 1 4.4776 -1.2831 -0.0088 34 1 0.9328 -2.5761 0.6023 35 1 2.6188 -3.1229 0.4395 36 1 1.0038 -4.8059 -0.9099 37 1 0.0796 -3.9808 -3.4480 38 1 1.7633 -4.5331 -3.6165 39 1 -1.5769 -5.6289 -2.7280 40 1 -0.5288 -5.9339 -4.9630 41 1 1.1627 -6.4880 -4.9765 42 1 0.3844 -8.5381 -3.9278 43 1 -1.1652 -7.8445 -6.3372 44 1 0.5260 -8.3993 -6.3497 45 1 -0.9838 -10.1177 -7.7740 46 1 -1.7616 -12.4394 -10.0423 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482792834.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:29 Heat of formation + Delta-G solvation = -88.015766 kcal Electronic energy + Delta-G solvation = -27857.574724 eV Core-core repulsion = 23589.141039 eV Total energy + Delta-G solvation = -4268.433685 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.10534 -40.80924 -40.16989 -38.91525 -36.34131 -35.69148 -35.32061 -35.00625 -33.27072 -32.64368 -31.50823 -29.49994 -28.20467 -27.58293 -26.37871 -24.49872 -22.80799 -22.41877 -21.97005 -21.09675 -20.66600 -19.91513 -18.75950 -18.32997 -18.04248 -17.47894 -17.12538 -16.75306 -16.50676 -16.43344 -16.11065 -16.04076 -15.73969 -15.27605 -15.24116 -14.99873 -14.75389 -14.51327 -14.42923 -13.99418 -13.94084 -13.66669 -13.48745 -13.45844 -13.23078 -13.20285 -13.11880 -12.95488 -12.69951 -12.40849 -12.11436 -11.95455 -11.54957 -11.51624 -11.06909 -10.98576 -10.50844 -10.32564 -10.23544 -10.01819 -9.30032 -9.27967 -8.47347 -5.96066 0.96257 1.36643 1.41521 1.42243 1.56281 1.66414 2.05099 2.14988 2.19400 2.29763 2.88662 3.20195 3.42371 3.54007 3.59417 3.63069 3.75573 3.82134 3.89352 4.03752 4.12398 4.13571 4.31523 4.42396 4.43888 4.50503 4.55684 4.56000 4.67803 4.68082 4.73184 4.83119 5.00506 5.04922 5.26375 5.28907 5.40889 5.82475 5.85830 6.08092 6.16091 6.36958 6.42537 6.59617 6.87490 7.08090 7.12466 7.14086 7.56052 8.11350 8.70197 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.044075 B = 0.001384 C = 0.001376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.124345 B =20226.083470 C =20344.805182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.202 3.798 3 N -0.538 5.538 4 C -0.058 4.058 5 C -0.049 4.049 6 N -0.445 5.445 7 C 0.084 3.916 8 C 0.495 3.505 9 O -0.575 6.575 10 N -0.703 5.703 11 C 0.097 3.903 12 C 0.115 3.885 13 H 0.108 0.892 14 O -0.558 6.558 15 C 0.028 3.972 16 N -0.673 5.673 17 C 0.065 3.935 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.574 5.574 21 C -0.334 4.334 22 H 0.079 0.921 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.271 1.271 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.181 0.819 33 H 0.203 0.797 34 H 0.155 0.845 35 H 0.160 0.840 36 H 0.421 0.579 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.386 0.614 40 H 0.087 0.913 41 H 0.053 0.947 42 H 0.344 0.656 43 H 0.104 0.896 44 H 0.066 0.934 45 H 0.396 0.604 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.338 20.404 17.528 28.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.061 4.061 3 N -0.258 5.258 4 C -0.204 4.204 5 C -0.181 4.181 6 N -0.128 5.128 7 C -0.041 4.041 8 C 0.281 3.719 9 O -0.454 6.454 10 N -0.357 5.357 11 C -0.028 4.028 12 C 0.055 3.945 13 H 0.126 0.874 14 O -0.364 6.364 15 C -0.101 4.101 16 N -0.305 5.305 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.509 6.509 20 N -0.211 5.211 21 C -0.464 4.464 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.198 1.198 27 H -0.197 1.197 28 H -0.196 1.196 29 H 0.121 0.879 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.198 0.802 33 H 0.220 0.780 34 H 0.173 0.827 35 H 0.178 0.822 36 H 0.259 0.741 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.235 0.765 40 H 0.105 0.895 41 H 0.071 0.929 42 H 0.163 0.837 43 H 0.122 0.878 44 H 0.084 0.916 45 H 0.230 0.770 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.673 20.945 17.845 28.566 hybrid contribution 0.834 -1.414 -1.347 2.123 sum 8.507 19.531 16.498 26.945 Atomic orbital electron populations 1.20275 0.83359 1.04237 1.04643 1.23787 0.96830 0.81431 1.04036 1.70195 1.03590 1.29892 1.22108 1.22646 0.94737 0.94139 1.08891 1.23136 0.87697 0.96861 1.10386 1.45030 1.06564 1.06818 1.54417 1.22018 1.07139 0.80599 0.94369 1.21207 0.76819 0.82057 0.91841 1.90811 1.53205 1.54188 1.47193 1.45683 1.66836 1.13009 1.10133 1.21947 1.01751 0.95402 0.83695 1.21948 0.87116 0.93420 0.92029 0.87393 1.86606 1.20635 1.73350 1.55832 1.22682 1.00392 0.89468 0.97598 1.59959 1.55181 1.03052 1.12319 1.21542 1.01536 0.91787 0.91887 1.20917 0.83124 0.89753 0.83790 1.90500 1.58334 1.71317 1.30760 1.41947 1.59427 1.12135 1.07617 1.19714 1.43406 0.89111 0.94165 0.90314 1.26031 0.97080 1.04113 0.93978 1.69674 1.49232 1.39309 0.97928 0.84874 0.78171 0.77032 0.78283 1.19754 1.19668 1.19610 0.87937 0.89831 0.90241 0.80213 0.78027 0.82748 0.82220 0.74131 0.91041 0.90779 0.76520 0.89504 0.92935 0.83744 0.87829 0.91595 0.76985 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.04 71.24 0.72 -0.12 16 2 C 0.20 3.92 7.88 138.13 1.09 5.01 16 3 N -0.54 -13.33 11.25 -188.13 -2.12 -15.44 16 4 C -0.06 -1.17 11.87 83.52 0.99 -0.18 16 5 C -0.05 -0.75 11.58 83.09 0.96 0.21 16 6 N -0.45 -6.58 2.24 -518.34 -1.16 -7.75 16 7 C 0.08 0.50 6.16 85.63 0.53 1.03 16 8 C 0.50 6.28 7.90 87.66 0.69 6.97 16 9 O -0.58 -13.80 16.42 -3.04 -0.05 -13.85 16 10 N -0.70 -6.02 5.50 -463.05 -2.55 -8.57 16 11 C 0.10 1.12 5.31 86.38 0.46 1.57 16 12 C 0.12 1.52 3.21 30.59 0.10 1.62 16 13 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 14 O -0.56 -9.07 13.15 -148.98 -1.96 -11.03 16 15 C 0.03 0.49 5.35 86.30 0.46 0.95 16 16 N -0.67 -18.68 5.99 -517.93 -3.10 -21.78 16 17 C 0.06 2.06 6.17 85.56 0.53 2.59 16 18 C 0.44 20.19 7.82 87.66 0.69 20.87 16 19 O -0.62 -33.88 15.78 -3.08 -0.05 -33.93 16 20 N -0.57 -28.91 5.29 -306.99 -1.62 -30.53 16 21 C -0.33 -18.80 9.68 84.04 0.81 -17.98 16 22 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 23 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 24 N -0.92 -49.07 13.05 21.67 0.28 -48.79 16 25 Si 0.99 42.40 29.55 68.60 2.03 44.42 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 27 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 28 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 29 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 0.81 7.84 -2.38 -0.02 0.79 16 32 H 0.18 2.81 8.06 -2.91 -0.02 2.78 16 33 H 0.20 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.15 -0.01 7.94 -2.39 -0.02 -0.03 16 35 H 0.16 -0.16 8.13 -2.39 -0.02 -0.18 16 36 H 0.42 1.57 8.47 -92.71 -0.79 0.78 16 37 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.39 4.52 9.05 -74.05 -0.67 3.85 16 40 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 41 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.34 10.24 8.43 -89.69 -0.76 9.48 16 43 H 0.10 2.95 8.14 -2.38 -0.02 2.93 16 44 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.40 18.90 7.90 -92.71 -0.73 18.17 16 46 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -86.03 400.63 -3.71 -89.73 By element: Atomic # 1 Polarization: 37.05 SS G_CDS: -1.89 Total: 35.16 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 8.49 Total: 22.37 kcal Atomic # 7 Polarization: -122.59 SS G_CDS: -10.27 Total: -132.86 kcal Atomic # 8 Polarization: -56.76 SS G_CDS: -2.06 Total: -58.82 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -86.03 -3.71 -89.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482792834.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.718 kcal (2) G-P(sol) polarization free energy of solvation -86.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds