Wall clock time and date at job start Tue Mar 31 2020 22:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46651 * 2 1 4 4 N 1.46500 * 109.46956 * 181.69317 * 3 2 1 5 5 C 1.34781 * 119.99641 * 84.66174 * 4 3 2 6 6 O 1.21284 * 119.99865 * 175.13527 * 5 4 3 7 7 C 1.50702 * 120.00193 * 355.13410 * 5 4 3 8 8 N 1.46494 * 109.46877 * 180.02562 * 7 5 4 9 9 C 1.36372 * 125.96726 * 90.00624 * 8 7 5 10 10 O 1.35635 * 125.98414 * 0.02620 * 9 8 7 11 11 N 1.30903 * 108.02538 * 180.29569 * 9 8 7 12 12 N 1.40112 * 107.94204 * 359.58625 * 11 9 8 13 13 C 1.30907 * 107.93501 * 0.41682 * 12 11 9 14 14 O 1.35637 * 125.98407 * 179.75394 * 13 12 11 15 15 C 1.46497 * 120.00270 * 264.65668 * 4 3 2 16 16 H 1.08996 * 110.88528 * 180.30463 * 15 4 3 17 17 C 1.55161 * 111.00009 * 56.42912 * 15 4 3 18 18 C 1.54318 * 102.94070 * 277.42476 * 17 15 4 19 19 N 1.47021 * 107.27334 * 337.81127 * 18 17 15 20 20 C 1.36940 * 125.65141 * 178.99053 * 19 18 17 21 21 H 1.08003 * 120.00068 * 179.97438 * 20 19 18 22 22 C 1.38815 * 119.99959 * 359.96793 * 20 19 18 23 23 N 1.31618 * 119.99834 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99894 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47153 * 90.00293 * 24 22 20 26 26 H 1.48506 * 109.46822 * 209.99917 * 24 22 20 27 27 H 1.48494 * 109.47471 * 330.00074 * 24 22 20 28 28 C 1.47426 * 108.70173 * 358.93848 * 19 18 17 29 29 H 1.08998 * 109.47367 * 299.99798 * 1 2 3 30 30 H 1.08999 * 109.47718 * 60.00200 * 1 2 3 31 31 H 1.09009 * 109.46647 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47367 * 240.00202 * 2 1 3 33 33 H 1.09000 * 109.47322 * 119.99437 * 2 1 3 34 34 H 1.08997 * 109.47213 * 61.69718 * 3 2 1 35 35 H 1.08994 * 109.47183 * 301.69687 * 3 2 1 36 36 H 1.08998 * 109.47002 * 59.99908 * 7 5 4 37 37 H 1.08997 * 109.46958 * 300.00010 * 7 5 4 38 38 H 0.96701 * 113.99496 * 90.01013 * 10 9 8 39 39 H 0.96694 * 113.99454 * 269.99746 * 14 13 12 40 40 H 1.09000 * 110.72323 * 35.78917 * 17 15 4 41 41 H 1.08997 * 110.71821 * 158.88374 * 17 15 4 42 42 H 1.09002 * 109.88248 * 97.22552 * 18 17 15 43 43 H 1.09001 * 109.88348 * 218.39243 * 18 17 15 44 44 H 0.97005 * 120.00186 * 179.97438 * 23 22 20 45 45 H 1.09004 * 110.36590 * 265.28747 * 28 19 18 46 46 H 1.08997 * 110.36595 * 142.97146 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5043 1.4429 -0.0408 5 6 4.1455 1.3458 -1.2224 6 8 5.3543 1.4347 -1.2654 7 6 3.3604 1.1270 -2.4900 8 7 4.2803 1.0565 -3.6280 9 6 4.8678 -0.0741 -4.1141 10 8 4.7024 -1.3299 -3.6290 11 7 5.6239 0.2658 -5.1272 12 7 5.5123 1.6513 -5.3033 13 6 4.6991 2.1101 -4.3858 14 8 4.3365 3.4063 -4.2182 15 6 4.2718 1.5487 1.2025 16 1 5.3427 1.5399 1.0001 17 6 3.8838 0.4194 2.1933 18 6 2.6092 0.9719 2.8652 19 7 2.6321 2.4336 2.7094 20 6 1.6671 3.2987 3.1518 21 1 1.7775 4.3605 2.9878 22 6 0.5470 2.8109 3.8107 23 7 0.4127 1.5170 4.0108 24 14 -0.7696 3.9909 4.4135 25 1 -1.7867 4.1836 3.3488 26 1 -1.4208 3.4293 5.6243 27 1 -0.1482 5.2977 4.7468 28 6 3.8667 2.8140 1.9991 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.7016 1.9475 0.9048 35 1 1.6519 1.9651 -0.8743 36 1 2.6657 1.9543 -2.6345 37 1 2.8030 0.1933 -2.4155 38 1 3.9705 -1.8148 -4.0344 39 1 4.9153 3.9028 -3.6237 40 1 3.6679 -0.5055 1.6585 41 1 4.6735 0.2629 2.9281 42 1 1.7252 0.5610 2.3775 43 1 2.6056 0.7119 3.9237 44 1 -0.3699 1.1761 4.4716 45 1 4.6477 3.0800 2.7115 46 1 3.6731 3.6441 1.3198 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493973602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:21 Heat of formation + Delta-G solvation = 22.698323 kcal Electronic energy + Delta-G solvation = -31705.936163 eV Core-core repulsion = 27442.303401 eV Total energy + Delta-G solvation = -4263.632761 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.46290 -40.23751 -38.35554 -37.84753 -37.25872 -35.24471 -34.39828 -33.06700 -31.95101 -29.72734 -29.59764 -28.48432 -27.36389 -25.80569 -24.48439 -22.94039 -22.43438 -21.62876 -21.14904 -20.22841 -19.18555 -19.03159 -18.55499 -17.71910 -17.21984 -16.79117 -16.50143 -15.75533 -15.54112 -15.37586 -14.87179 -14.65433 -14.15319 -13.89564 -13.66753 -13.53192 -13.21093 -13.08704 -12.75363 -12.58208 -12.42061 -12.16511 -12.05089 -11.76252 -11.54988 -11.47586 -11.26815 -11.09387 -11.02248 -10.78537 -10.74017 -10.71137 -10.46589 -10.27118 -10.22881 -10.06463 -9.81068 -9.57079 -9.53103 -8.82736 -8.46840 -6.98745 -5.89389 -3.24267 1.28716 1.58020 2.06730 2.41911 2.95837 3.08012 3.27182 3.35014 3.35604 3.60472 4.20208 4.25395 4.34245 4.65624 5.01943 5.04404 5.11922 5.17235 5.26146 5.31151 5.35085 5.43506 5.52316 5.53351 5.68304 5.72357 5.88049 5.90072 6.00488 6.10999 6.18200 6.30005 6.34187 6.43594 6.49640 6.54674 6.63422 6.82774 6.87058 7.10782 7.39337 7.43144 7.51643 7.66107 7.72606 8.05624 8.06680 9.03534 9.62554 10.27160 11.20953 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017893 B = 0.003319 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.488601 B = 8433.050938 C = 8551.362177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C 0.078 3.922 4 N -0.574 5.574 5 C 0.497 3.503 6 O -0.540 6.540 7 C 0.081 3.919 8 N -0.495 5.495 9 C 0.417 3.583 10 O -0.433 6.433 11 N -0.299 5.299 12 N -0.297 5.297 13 C 0.417 3.583 14 O -0.438 6.438 15 C 0.123 3.877 16 H 0.099 0.901 17 C -0.158 4.158 18 C 0.167 3.833 19 N -0.602 5.602 20 C -0.235 4.235 21 H 0.078 0.922 22 C -0.001 4.001 23 N -0.917 5.917 24 Si 0.909 3.091 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.282 1.282 28 C 0.125 3.875 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.146 0.854 35 H 0.060 0.940 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.409 0.591 39 H 0.416 0.584 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.042 0.958 44 H 0.253 0.747 45 H 0.032 0.968 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.268 -3.747 -11.511 12.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C -0.045 4.045 4 N -0.305 5.305 5 C 0.282 3.718 6 O -0.418 6.418 7 C -0.046 4.046 8 N -0.214 5.214 9 C 0.107 3.893 10 O -0.232 6.232 11 N -0.143 5.143 12 N -0.141 5.141 13 C 0.107 3.893 14 O -0.239 6.239 15 C 0.019 3.981 16 H 0.117 0.883 17 C -0.197 4.197 18 C 0.043 3.957 19 N -0.329 5.329 20 C -0.363 4.363 21 H 0.095 0.905 22 C -0.198 4.198 23 N -0.563 5.563 24 Si 0.739 3.261 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.207 1.207 28 C -0.002 4.002 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.163 0.837 35 H 0.078 0.922 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.267 0.733 39 H 0.275 0.725 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.050 0.950 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.698 -3.773 -12.613 13.439 hybrid contribution -1.882 0.598 1.878 2.725 sum 0.815 -3.176 -10.734 11.224 Atomic orbital electron populations 1.21672 0.94848 1.01493 1.02606 1.22058 0.96736 0.97040 1.01833 1.22399 0.77672 0.97670 1.06736 1.47816 1.07674 1.69826 1.05148 1.20482 0.88280 0.77899 0.85160 1.90738 1.13819 1.50885 1.86394 1.21907 0.91619 1.07368 0.83688 1.46650 1.39722 1.08065 1.26986 1.21229 0.94118 0.81880 0.92074 1.85021 1.56067 1.18339 1.63773 1.78322 1.19537 1.02807 1.13620 1.78337 1.15189 1.00417 1.20162 1.21263 0.94568 0.82831 0.90653 1.84877 1.55575 1.13823 1.69629 1.22314 0.95614 0.97525 0.82656 0.88258 1.23312 1.01090 0.97356 0.97930 1.21408 0.92463 0.83226 0.98645 1.44613 1.19152 1.02728 1.66390 1.19025 0.97023 0.89035 1.31231 0.90453 1.24758 0.98444 0.96103 1.00500 1.69949 1.29319 1.10575 1.46504 0.86174 0.81734 0.79940 0.78221 1.21528 1.21663 1.20746 1.21896 0.90407 0.94200 0.93652 0.90763 0.93492 0.93035 0.93809 0.90179 0.83654 0.92192 0.85396 0.85602 0.73272 0.72539 0.91683 0.91284 0.91951 0.93978 0.93627 0.95016 0.93768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 37.16 0.37 -1.48 16 2 C -0.14 -1.75 5.31 -26.73 -0.14 -1.89 16 3 C 0.08 1.09 4.16 -4.04 -0.02 1.07 16 4 N -0.57 -8.32 2.53 -163.68 -0.41 -8.73 16 5 C 0.50 6.97 7.70 -10.98 -0.08 6.88 16 6 O -0.54 -9.50 15.82 5.55 0.09 -9.41 16 7 C 0.08 0.84 5.16 -5.20 -0.03 0.81 16 8 N -0.49 -6.01 2.25 -121.35 -0.27 -6.28 16 9 C 0.42 5.38 9.15 -88.81 -0.81 4.56 16 10 O -0.43 -4.28 13.58 -18.60 -0.25 -4.53 16 11 N -0.30 -4.59 12.72 29.66 0.38 -4.21 16 12 N -0.30 -4.58 12.72 29.66 0.38 -4.20 16 13 C 0.42 5.44 9.15 -88.81 -0.81 4.62 16 14 O -0.44 -4.49 13.58 -18.61 -0.25 -4.74 16 15 C 0.12 2.01 3.67 -65.79 -0.24 1.77 16 16 H 0.10 1.66 7.02 -51.93 -0.36 1.30 16 17 C -0.16 -2.64 5.99 -24.90 -0.15 -2.79 16 18 C 0.17 3.44 4.15 -3.07 -0.01 3.43 16 19 N -0.60 -13.10 1.91 -170.08 -0.32 -13.43 16 20 C -0.24 -5.73 9.91 -15.06 -0.15 -5.88 16 21 H 0.08 1.87 7.83 -52.48 -0.41 1.46 16 22 C 0.00 -0.03 5.49 -17.43 -0.10 -0.12 16 23 N -0.92 -23.53 10.31 55.49 0.57 -22.96 16 24 Si 0.91 20.10 29.55 -169.99 -5.02 15.07 16 25 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 C 0.13 2.32 6.54 -2.53 -0.02 2.30 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.04 0.45 6.32 -51.93 -0.33 0.12 16 33 H 0.08 1.18 4.72 -51.93 -0.25 0.93 16 34 H 0.15 2.67 4.31 -51.93 -0.22 2.45 16 35 H 0.06 0.70 6.71 -51.93 -0.35 0.35 16 36 H 0.13 1.09 7.29 -51.93 -0.38 0.71 16 37 H 0.13 1.02 6.36 -51.93 -0.33 0.69 16 38 H 0.41 1.48 9.06 45.56 0.41 1.89 16 39 H 0.42 2.69 9.06 45.56 0.41 3.10 16 40 H 0.06 1.02 6.77 -51.93 -0.35 0.67 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.06 1.34 4.45 -51.93 -0.23 1.11 16 43 H 0.04 1.02 7.50 -51.93 -0.39 0.63 16 44 H 0.25 6.45 8.31 -40.82 -0.34 6.11 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 367.13 15.07 5.53 5.53 Total: -1.00 -32.58 367.13 -6.23 -38.81 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.45 Total: 5.79 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: -2.19 Total: 13.28 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: 0.32 Total: -59.81 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.42 Total: -18.68 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.58 -6.23 -38.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493973602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.512 kcal (2) G-P(sol) polarization free energy of solvation -32.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds