Wall clock time and date at job start Tue Mar 31 2020 22:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46721 * 2 1 4 4 N 1.46495 * 109.46992 * 299.99874 * 3 2 1 5 5 C 1.36935 * 119.99906 * 180.02562 * 4 3 2 6 6 H 1.08004 * 120.00255 * 359.97438 * 5 4 3 7 7 C 1.38817 * 120.00127 * 180.02562 * 5 4 3 8 8 N 1.31622 * 119.99858 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00178 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47342 * 59.99744 * 9 7 5 11 11 H 1.48498 * 109.47102 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47077 * 299.99600 * 9 7 5 13 13 N 1.46498 * 109.47574 * 240.00069 * 2 1 3 14 14 C 1.34771 * 120.00293 * 175.44211 * 13 2 1 15 15 O 1.21561 * 120.00269 * 355.82522 * 14 13 2 16 16 C 1.47775 * 119.99984 * 175.83156 * 14 13 2 17 17 C 1.40654 * 119.69911 * 359.97103 * 16 14 13 18 18 C 1.35847 * 120.87723 * 180.02562 * 17 16 14 19 19 C 1.40396 * 119.84370 * 0.02562 * 18 17 16 20 20 C 1.40637 * 121.97575 * 180.02562 * 19 18 17 21 21 C 1.36221 * 118.72878 * 179.97438 * 20 19 18 22 22 N 1.32599 * 121.90639 * 359.97438 * 21 20 19 23 23 C 1.31239 * 122.73310 * 0.02562 * 22 21 20 24 24 C 1.40545 * 119.89211 * 359.97438 * 23 22 21 25 25 C 1.38562 * 119.70039 * 180.02562 * 16 14 13 26 26 C 1.52999 * 109.47195 * 119.99548 * 2 1 3 27 27 C 1.53005 * 117.49596 * 121.78789 * 26 2 1 28 28 C 1.52997 * 117.50019 * 53.13092 * 26 2 1 29 29 H 1.08999 * 109.46907 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47130 * 299.99794 * 1 2 3 31 31 H 1.08992 * 109.47333 * 60.00589 * 1 2 3 32 32 H 1.08994 * 109.47012 * 60.00172 * 3 2 1 33 33 H 1.09000 * 109.46986 * 180.02562 * 3 2 1 34 34 H 0.97004 * 120.00147 * 359.97438 * 4 3 2 35 35 H 0.97001 * 119.99729 * 180.02562 * 8 7 5 36 36 H 0.97004 * 119.99300 * 355.44275 * 13 2 1 37 37 H 1.08003 * 119.56409 * 0.04935 * 17 16 14 38 38 H 1.07996 * 120.07832 * 179.97438 * 18 17 16 39 39 H 1.07994 * 120.63642 * 359.70515 * 20 19 18 40 40 H 1.08001 * 119.04585 * 180.02562 * 21 20 19 41 41 H 1.08005 * 120.04905 * 180.02562 * 23 22 21 42 42 H 1.08001 * 120.34191 * 359.94906 * 25 16 14 43 43 H 1.08997 * 115.55204 * 267.45636 * 26 2 1 44 44 H 1.08998 * 117.50147 * 0.02562 * 27 26 2 45 45 H 1.08999 * 117.49531 * 145.02414 * 27 26 2 46 46 H 1.09000 * 117.50249 * 214.98331 * 28 26 2 47 47 H 1.09007 * 117.49478 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 1.5516 2.1331 -1.1962 5 6 1.8827 3.4440 -1.4131 6 1 2.5036 3.9690 -0.7022 7 6 1.4195 4.0985 -2.5463 8 7 0.6616 3.4592 -3.4119 9 14 1.8719 5.8865 -2.8427 10 1 3.3485 6.0153 -2.9324 11 1 1.2560 6.3490 -4.1123 12 1 1.3700 6.7169 -1.7185 13 7 2.0184 -0.6906 -1.1961 14 6 3.3400 -0.7340 -1.4568 15 8 4.1206 -0.1364 -0.7417 16 6 3.8402 -1.5079 -2.6121 17 6 2.9315 -2.1973 -3.4351 18 6 3.3651 -2.9164 -4.5029 19 6 4.7372 -2.9767 -4.7939 20 6 5.2351 -3.7069 -5.8879 21 6 6.5792 -3.7197 -6.1094 22 7 7.4249 -3.0652 -5.3254 23 6 7.0328 -2.3638 -4.2878 24 6 5.6657 -2.2854 -3.9714 25 6 5.2002 -1.5487 -2.8740 26 6 2.0400 -0.7211 1.2493 27 6 2.9496 -1.9341 1.0429 28 6 1.5078 -2.1301 1.5184 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1299 1.4426 -0.0005 34 1 0.9942 1.6615 -1.8349 35 1 0.3383 3.9165 -4.2040 36 1 1.3905 -1.1166 -1.8005 37 1 1.8749 -2.1541 -3.2154 38 1 2.6561 -3.4412 -5.1260 39 1 4.5652 -4.2507 -6.5373 40 1 6.9671 -4.2785 -6.9483 41 1 7.7596 -1.8470 -3.6785 42 1 5.8942 -1.0178 -2.2393 43 1 2.2379 -0.0846 2.1117 44 1 3.1849 -2.2180 0.0172 45 1 3.7455 -2.0957 1.7699 46 1 1.3558 -2.4207 2.5579 47 1 0.7940 -2.5431 0.8056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495294911.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:01 Heat of formation + Delta-G solvation = 72.000881 kcal Electronic energy + Delta-G solvation = -29558.130302 eV Core-core repulsion = 25707.484723 eV Total energy + Delta-G solvation = -3850.645579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.08749 -40.23758 -37.79742 -36.61626 -34.96127 -33.44712 -33.11927 -31.95782 -30.82634 -29.85883 -29.40090 -26.05819 -24.87895 -24.06270 -23.67976 -22.46137 -22.13804 -21.40702 -21.08632 -19.13094 -18.25523 -17.86634 -17.26141 -16.76662 -15.99613 -15.77588 -15.37624 -15.18773 -14.60996 -14.38087 -14.33355 -14.14509 -13.80823 -13.71895 -13.70696 -13.29796 -13.18422 -12.86053 -12.26625 -12.14107 -12.07903 -12.00000 -11.82667 -11.41166 -11.32307 -11.09005 -10.84738 -10.78772 -10.72916 -10.35341 -10.22733 -10.06761 -9.90168 -9.72250 -9.63377 -9.33428 -9.25842 -8.72212 -8.61075 -8.23045 -6.79256 -5.70767 -2.96190 0.10128 0.58301 1.68181 2.55324 3.33918 3.48266 3.51214 3.52196 3.53793 3.96999 4.02295 4.21044 4.34848 4.51106 4.60657 4.63232 4.77174 4.84793 4.87775 5.01183 5.02007 5.10493 5.14629 5.38892 5.42278 5.51290 5.54121 5.60996 5.65735 5.69124 5.75222 5.76533 5.82033 5.97123 6.03866 6.14354 6.15410 6.16934 6.25958 6.30036 6.36566 6.42657 6.55801 6.61446 6.64012 6.93935 7.19592 7.76279 7.77297 7.85827 8.49211 8.58293 9.60468 10.18994 10.54449 11.52590 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008858 B = 0.003932 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3160.262199 B = 7119.467278 C = 9162.547085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.200 3.800 3 C 0.139 3.861 4 N -0.725 5.725 5 C -0.228 4.228 6 H 0.068 0.932 7 C -0.016 4.016 8 N -0.938 5.938 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 N -0.710 5.710 14 C 0.566 3.434 15 O -0.516 6.516 16 C -0.127 4.127 17 C -0.066 4.066 18 C -0.120 4.120 19 C -0.010 4.010 20 C -0.160 4.160 21 C 0.079 3.921 22 N -0.494 5.494 23 C 0.158 3.842 24 C -0.122 4.122 25 C -0.019 4.019 26 C -0.143 4.143 27 C -0.164 4.164 28 C -0.183 4.183 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.020 0.980 33 H 0.057 0.943 34 H 0.381 0.619 35 H 0.253 0.747 36 H 0.394 0.606 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.152 0.848 41 H 0.167 0.833 42 H 0.149 0.851 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.114 -19.338 0.841 19.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.115 3.885 3 C 0.011 3.989 4 N -0.370 5.370 5 C -0.360 4.360 6 H 0.086 0.914 7 C -0.211 4.211 8 N -0.587 5.587 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.214 1.214 13 N -0.361 5.361 14 C 0.353 3.647 15 O -0.393 6.393 16 C -0.130 4.130 17 C -0.086 4.086 18 C -0.138 4.138 19 C -0.015 4.015 20 C -0.180 4.180 21 C -0.063 4.063 22 N -0.202 5.202 23 C -0.013 4.013 24 C -0.124 4.124 25 C -0.040 4.040 26 C -0.162 4.162 27 C -0.201 4.201 28 C -0.220 4.220 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.215 0.785 35 H 0.063 0.937 36 H 0.229 0.771 37 H 0.148 0.852 38 H 0.153 0.847 39 H 0.156 0.844 40 H 0.170 0.830 41 H 0.184 0.816 42 H 0.167 0.833 43 H 0.127 0.873 44 H 0.109 0.891 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.585 -18.873 1.069 19.711 hybrid contribution -1.310 0.789 -0.677 1.672 sum 4.275 -18.084 0.392 18.587 Atomic orbital electron populations 1.21994 0.93113 1.01316 1.04166 1.20090 0.93706 0.92721 0.82013 1.21182 0.99311 0.87557 0.90868 1.42224 1.61211 1.10440 1.23103 1.19189 1.24884 0.87625 1.04262 0.91431 1.24658 1.00840 0.98127 0.97500 1.69634 1.39800 1.36109 1.13199 0.86294 0.77868 0.85249 0.76987 1.21406 1.21814 1.21383 1.45895 1.06832 1.56910 1.26500 1.17828 0.82747 0.80338 0.83823 1.90748 1.55882 1.43292 1.49364 1.20142 0.94180 1.00819 0.97845 1.21074 0.99618 0.94207 0.93706 1.20827 0.93974 1.00785 0.98224 1.18276 0.93871 0.95132 0.94215 1.21912 0.97228 1.00821 0.98026 1.22221 0.89925 0.96379 0.97818 1.67477 1.39833 1.07916 1.05007 1.23324 0.92618 0.92808 0.92551 1.19003 0.95241 1.00653 0.97482 1.21453 0.95115 0.93454 0.93952 1.22565 1.03968 0.90206 0.99498 1.22934 0.92865 1.02265 1.02048 1.22971 0.97442 1.00062 1.01532 0.92906 0.90914 0.90704 0.96190 0.92492 0.78526 0.93731 0.77128 0.85162 0.84672 0.84393 0.83039 0.81622 0.83347 0.87289 0.89067 0.89457 0.89314 0.89151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.18 37.16 0.30 -1.82 16 2 C 0.20 3.19 0.55 -131.82 -0.07 3.11 16 3 C 0.14 2.92 4.84 -4.04 -0.02 2.90 16 4 N -0.73 -18.29 5.17 -59.91 -0.31 -18.60 16 5 C -0.23 -6.53 9.99 -15.06 -0.15 -6.68 16 6 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 7 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 8 N -0.94 -28.27 13.06 55.49 0.72 -27.55 16 9 Si 0.90 22.99 29.55 -169.99 -5.02 17.97 16 10 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 11 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 N -0.71 -10.64 4.15 -48.56 -0.20 -10.84 16 14 C 0.57 9.34 4.77 -12.36 -0.06 9.28 16 15 O -0.52 -10.10 12.57 5.31 0.07 -10.03 16 16 C -0.13 -1.79 5.87 -104.97 -0.62 -2.41 16 17 C -0.07 -0.77 9.44 -39.53 -0.37 -1.15 16 18 C -0.12 -1.27 9.77 -39.63 -0.39 -1.65 16 19 C -0.01 -0.11 5.75 -106.74 -0.61 -0.73 16 20 C -0.16 -1.55 9.87 -39.40 -0.39 -1.93 16 21 C 0.08 0.80 11.07 -17.95 -0.20 0.60 16 22 N -0.49 -5.92 10.30 -13.11 -0.14 -6.06 16 23 C 0.16 1.81 11.05 -16.94 -0.19 1.62 16 24 C -0.12 -1.51 5.74 -106.87 -0.61 -2.12 16 25 C -0.02 -0.25 9.37 -38.75 -0.36 -0.62 16 26 C -0.14 -2.00 4.86 -90.62 -0.44 -2.44 16 27 C -0.16 -2.16 8.53 -26.69 -0.23 -2.39 16 28 C -0.18 -2.07 9.68 -26.70 -0.26 -2.33 16 29 H 0.05 0.61 6.89 -51.93 -0.36 0.25 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.24 6.86 -51.93 -0.36 0.89 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 1.34 5.72 -51.93 -0.30 1.04 16 34 H 0.38 9.81 6.35 -40.82 -0.26 9.56 16 35 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.39 5.00 6.47 -40.82 -0.26 4.74 16 37 H 0.13 1.24 6.35 -52.48 -0.33 0.91 16 38 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.17 1.46 8.06 -52.48 -0.42 1.04 16 42 H 0.15 1.93 7.61 -52.49 -0.40 1.53 16 43 H 0.11 1.55 8.06 -51.93 -0.42 1.13 16 44 H 0.09 1.27 5.16 -51.93 -0.27 1.00 16 45 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.09 0.96 7.17 -51.92 -0.37 0.58 16 LS Contribution 378.52 15.07 5.70 5.70 Total: -1.00 -34.36 378.52 -10.19 -44.55 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -6.25 Total: 14.17 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -4.76 Total: -9.32 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: 0.08 Total: -63.05 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.07 Total: -10.03 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.36 -10.19 -44.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495294911.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.556 kcal (2) G-P(sol) polarization free energy of solvation -34.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds