Wall clock time and date at job start Tue Mar 31 2020 22:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47165 * 2 1 4 4 N 1.46497 * 109.47289 * 180.02562 * 3 2 1 5 5 C 1.36938 * 120.00461 * 180.02562 * 4 3 2 6 6 H 1.08008 * 119.99834 * 0.02562 * 5 4 3 7 7 C 1.38808 * 120.00413 * 180.02562 * 5 4 3 8 8 N 1.31618 * 119.99833 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00061 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47107 * 59.99560 * 9 7 5 11 11 H 1.48498 * 109.46853 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46814 * 299.99457 * 9 7 5 13 13 N 1.46500 * 109.47106 * 119.99823 * 2 1 3 14 14 C 1.34770 * 120.00283 * 294.96418 * 13 2 1 15 15 O 1.21559 * 119.99802 * 5.22122 * 14 13 2 16 16 C 1.47775 * 120.00258 * 185.21159 * 14 13 2 17 17 C 1.40654 * 119.69743 * 0.02562 * 16 14 13 18 18 C 1.35842 * 120.87735 * 179.97438 * 17 16 14 19 19 C 1.40391 * 119.84224 * 0.02562 * 18 17 16 20 20 C 1.40642 * 121.96956 * 180.02562 * 19 18 17 21 21 C 1.36227 * 118.72826 * 179.97438 * 20 19 18 22 22 N 1.32595 * 121.90034 * 359.97438 * 21 20 19 23 23 C 1.31244 * 122.74146 * 0.02562 * 22 21 20 24 24 C 1.40546 * 119.88947 * 0.02562 * 23 22 21 25 25 C 1.38564 * 119.70010 * 179.72821 * 16 14 13 26 26 C 1.52994 * 109.46986 * 240.00060 * 2 1 3 27 27 C 1.53004 * 117.49972 * 294.03867 * 26 2 1 28 28 C 1.53002 * 60.00142 * 252.51114 * 27 26 2 29 29 H 1.09007 * 109.47407 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47011 * 300.00143 * 1 2 3 31 31 H 1.08995 * 109.47770 * 59.99937 * 1 2 3 32 32 H 1.09005 * 109.47413 * 300.00136 * 3 2 1 33 33 H 1.09001 * 109.47273 * 60.00017 * 3 2 1 34 34 H 0.97003 * 119.99927 * 359.97438 * 4 3 2 35 35 H 0.97005 * 119.99830 * 180.02562 * 8 7 5 36 36 H 0.97005 * 119.99699 * 114.96660 * 13 2 1 37 37 H 1.08006 * 119.56138 * 0.02562 * 17 16 14 38 38 H 1.08005 * 120.08020 * 179.97438 * 18 17 16 39 39 H 1.07997 * 120.63408 * 359.97438 * 20 19 18 40 40 H 1.08003 * 119.04514 * 179.97438 * 21 20 19 41 41 H 1.08001 * 120.05058 * 180.02562 * 23 22 21 42 42 H 1.07995 * 120.34279 * 359.97438 * 25 16 14 43 43 H 1.09000 * 115.56694 * 79.73166 * 26 2 1 44 44 H 1.08999 * 117.50184 * 145.02123 * 27 26 2 45 45 H 1.08997 * 117.50032 * 359.97438 * 27 26 2 46 46 H 1.09003 * 117.50263 * 107.48870 * 28 27 26 47 47 H 1.09004 * 117.49904 * 252.51092 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1897 2.6284 -0.0002 6 1 3.6497 3.5638 0.0010 7 6 5.5778 2.6284 -0.0013 8 7 6.2358 1.4885 -0.0023 9 14 6.5118 4.2462 0.0000 10 1 6.1539 5.0234 1.2137 11 1 7.9717 3.9748 -0.0009 12 1 6.1521 5.0263 -1.2113 13 7 2.0183 -0.6906 1.1962 14 6 1.7785 -0.1740 2.4176 15 8 1.0772 0.8122 2.5335 16 6 2.3678 -0.8065 3.6161 17 6 3.1786 -1.9471 3.4747 18 6 3.7328 -2.5474 4.5599 19 6 3.4967 -2.0276 5.8425 20 6 4.0483 -2.6128 6.9963 21 6 3.7763 -2.0533 8.2083 22 7 3.0102 -0.9776 8.3273 23 6 2.4623 -0.3787 7.2960 24 6 2.6793 -0.8771 6.0000 25 6 2.1218 -0.2668 4.8684 26 6 2.0399 -0.7212 -1.2492 27 6 1.7541 -2.2198 -1.3659 28 6 3.1735 -1.7326 -1.0677 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.9899 0.6024 -0.0006 35 1 7.2059 1.4886 -0.0027 36 1 2.5142 -1.5197 1.1090 37 1 3.3635 -2.3506 2.4901 38 1 4.3530 -3.4230 4.4365 39 1 4.6754 -3.4889 6.9229 40 1 4.1969 -2.4987 9.0977 41 1 1.8456 0.4957 7.4432 42 1 1.5030 0.6122 4.9717 43 1 2.0314 -0.1343 -2.1676 44 1 1.5576 -2.6187 -2.3611 45 1 1.2032 -2.6920 -0.5525 46 1 3.5561 -1.8842 -0.0584 47 1 3.9108 -1.8110 -1.8668 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495294912.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:04 Heat of formation + Delta-G solvation = 47.033669 kcal Electronic energy + Delta-G solvation = -29582.210912 eV Core-core repulsion = 25730.482674 eV Total energy + Delta-G solvation = -3851.728238 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.04116 -41.30683 -39.15851 -37.89463 -36.26078 -34.90896 -34.01178 -33.46298 -32.28093 -31.32610 -30.59858 -27.48114 -25.99037 -24.96654 -24.76945 -23.86485 -23.27699 -23.15224 -22.20788 -20.30032 -19.64382 -19.15433 -18.74364 -17.66469 -17.20137 -16.94213 -16.32479 -16.11317 -16.05814 -15.84609 -15.59986 -15.34789 -15.16352 -15.05858 -14.81380 -14.53081 -14.30496 -14.02601 -13.90570 -13.76627 -13.32029 -13.04746 -12.92895 -12.82553 -12.75465 -12.54063 -12.35873 -12.28759 -12.21890 -12.04297 -11.78343 -11.23336 -11.14627 -11.06581 -10.98537 -10.70984 -10.48904 -10.21888 -9.93031 -9.10610 -8.90914 -7.93549 -5.18519 -0.80545 -0.33296 0.78001 1.43428 1.45952 1.51733 1.53934 2.10101 2.41551 2.55428 2.94339 3.05821 3.37997 3.44107 3.49010 3.59076 3.65495 3.68736 3.82345 3.86950 3.98424 4.00680 4.06503 4.10191 4.26712 4.33508 4.57792 4.62610 4.63702 4.67336 4.74672 4.79370 4.83074 4.87720 4.91380 4.93356 4.96708 5.07372 5.17699 5.19573 5.26211 5.29259 5.30996 5.37472 5.48414 5.59533 5.67072 5.71850 6.29262 6.57151 6.93553 7.25110 7.37464 8.13398 8.44296 9.28996 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008951 B = 0.003960 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3127.385023 B = 7069.542744 C = 8695.892337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.207 3.793 3 C 0.140 3.860 4 N -0.728 5.728 5 C -0.245 4.245 6 H 0.061 0.939 7 C -0.066 4.066 8 N -0.959 5.959 9 Si 0.964 3.036 10 H -0.287 1.287 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.702 5.702 14 C 0.558 3.442 15 O -0.564 6.564 16 C -0.147 4.147 17 C -0.078 4.078 18 C -0.108 4.108 19 C -0.025 4.025 20 C -0.152 4.152 21 C 0.071 3.929 22 N -0.511 5.511 23 C 0.148 3.852 24 C -0.135 4.135 25 C -0.028 4.028 26 C -0.159 4.159 27 C -0.146 4.146 28 C -0.182 4.182 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.020 0.980 33 H 0.024 0.976 34 H 0.381 0.619 35 H 0.250 0.750 36 H 0.405 0.595 37 H 0.144 0.856 38 H 0.171 0.829 39 H 0.174 0.826 40 H 0.182 0.818 41 H 0.181 0.819 42 H 0.142 0.858 43 H 0.106 0.894 44 H 0.114 0.886 45 H 0.107 0.893 46 H 0.089 0.911 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.507 -15.999 8.196 19.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.121 3.879 3 C 0.012 3.988 4 N -0.371 5.371 5 C -0.377 4.377 6 H 0.079 0.921 7 C -0.259 4.259 8 N -0.610 5.610 9 Si 0.793 3.207 10 H -0.214 1.214 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.356 5.356 14 C 0.346 3.654 15 O -0.444 6.444 16 C -0.150 4.150 17 C -0.098 4.098 18 C -0.126 4.126 19 C -0.030 4.030 20 C -0.171 4.171 21 C -0.072 4.072 22 N -0.220 5.220 23 C -0.023 4.023 24 C -0.137 4.137 25 C -0.049 4.049 26 C -0.178 4.178 27 C -0.182 4.182 28 C -0.220 4.220 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.038 0.962 33 H 0.041 0.959 34 H 0.215 0.785 35 H 0.059 0.941 36 H 0.245 0.755 37 H 0.161 0.839 38 H 0.189 0.811 39 H 0.191 0.809 40 H 0.199 0.801 41 H 0.198 0.802 42 H 0.159 0.841 43 H 0.124 0.876 44 H 0.133 0.867 45 H 0.126 0.874 46 H 0.107 0.893 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.028 -14.916 9.137 19.685 hybrid contribution 1.352 0.586 -1.078 1.826 sum -7.676 -14.330 8.059 18.144 Atomic orbital electron populations 1.22022 0.92415 1.03158 1.02800 1.19933 0.94461 0.90503 0.82993 1.21173 0.84568 0.95127 0.97914 1.42266 1.00610 1.05201 1.89054 1.19506 0.89708 0.87244 1.41275 0.92073 1.25350 0.96981 0.99663 1.03874 1.69767 1.06459 1.25343 1.59443 0.85362 0.77494 0.79949 0.77867 1.21364 1.21651 1.20486 1.46024 1.57369 1.27385 1.04822 1.18422 0.79863 0.83168 0.83918 1.90677 1.39754 1.27107 1.86869 1.20062 1.02637 0.98858 0.93422 1.21206 0.94462 0.93418 1.00706 1.21208 1.00082 1.01313 0.89971 1.18652 0.94882 0.93772 0.95705 1.22282 1.01031 1.02247 0.91577 1.22789 0.94115 0.91489 0.98784 1.67522 1.09606 1.10177 1.34650 1.23578 0.94693 0.97802 0.86202 1.19115 1.01197 0.97941 0.95440 1.21470 0.95389 0.97634 0.90403 1.22297 1.04888 0.92742 0.97870 1.23110 0.96903 0.93822 1.04386 1.22919 0.92598 1.03866 1.02603 0.90364 0.92659 0.90732 0.96231 0.95853 0.78483 0.94093 0.75478 0.83854 0.81144 0.80875 0.80079 0.80163 0.84059 0.87628 0.86733 0.87430 0.89310 0.88902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 8.37 71.98 0.60 -3.48 16 2 C 0.21 6.76 0.52 3.60 0.00 6.77 16 3 C 0.14 6.15 4.89 86.38 0.42 6.57 16 4 N -0.73 -37.79 5.22 -343.45 -1.79 -39.58 16 5 C -0.25 -14.33 9.99 84.03 0.84 -13.49 16 6 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16 7 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 8 N -0.96 -58.04 13.06 21.65 0.28 -57.76 16 9 Si 0.96 47.59 29.55 68.60 2.03 49.62 16 10 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 11 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 13 N -0.70 -21.90 4.43 -425.86 -1.89 -23.79 16 14 C 0.56 19.77 7.17 86.77 0.62 20.40 16 15 O -0.56 -23.51 12.54 -3.90 -0.05 -23.56 16 16 C -0.15 -4.46 5.87 -20.09 -0.12 -4.58 16 17 C -0.08 -1.90 9.44 22.30 0.21 -1.68 16 18 C -0.11 -2.19 9.77 22.24 0.22 -1.97 16 19 C -0.02 -0.56 5.75 -21.23 -0.12 -0.68 16 20 C -0.15 -2.61 9.87 22.39 0.22 -2.38 16 21 C 0.07 1.30 11.07 84.11 0.93 2.23 16 22 N -0.51 -11.94 10.30 -195.40 -2.01 -13.96 16 23 C 0.15 3.46 11.05 85.34 0.94 4.40 16 24 C -0.13 -3.45 5.74 -21.32 -0.12 -3.57 16 25 C -0.03 -0.81 9.37 22.81 0.21 -0.60 16 26 C -0.16 -4.56 4.48 -10.79 -0.05 -4.61 16 27 C -0.15 -2.91 9.53 30.60 0.29 -2.62 16 28 C -0.18 -4.89 8.98 30.60 0.27 -4.61 16 29 H 0.08 1.78 7.71 -2.38 -0.02 1.76 16 30 H 0.05 1.80 6.37 -2.39 -0.02 1.78 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.02 1.17 5.99 -2.39 -0.01 1.15 16 34 H 0.38 19.99 6.43 -92.71 -0.60 19.39 16 35 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16 36 H 0.40 10.63 3.63 -92.70 -0.34 10.29 16 37 H 0.14 2.87 6.35 -2.91 -0.02 2.85 16 38 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 40 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 41 H 0.18 3.36 8.06 -2.91 -0.02 3.33 16 42 H 0.14 4.10 7.61 -2.91 -0.02 4.08 16 43 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 44 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.11 1.83 7.99 -2.39 -0.02 1.81 16 46 H 0.09 2.39 5.95 -2.39 -0.01 2.38 16 47 H 0.09 2.61 8.14 -2.38 -0.02 2.59 16 Total: -1.00 -75.56 380.90 2.50 -73.06 By element: Atomic # 1 Polarization: 43.18 SS G_CDS: 0.08 Total: 43.27 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: 5.85 Total: -7.30 kcal Atomic # 7 Polarization: -129.68 SS G_CDS: -5.41 Total: -135.09 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.05 Total: -23.56 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -75.56 2.50 -73.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495294912.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.098 kcal (2) G-P(sol) polarization free energy of solvation -75.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds