Wall clock time and date at job start Tue Mar 31 2020 22:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47170 * 2 1 4 4 C 1.38598 * 119.54457 * 125.01993 * 3 2 1 5 5 C 1.38590 * 119.34938 * 180.02562 * 4 3 2 6 6 C 1.38638 * 118.48514 * 359.74641 * 5 4 3 7 7 C 1.39268 * 119.06110 * 0.47640 * 6 5 4 8 8 C 1.48165 * 119.72570 * 179.79110 * 7 6 5 9 9 O 1.21522 * 119.99606 * 359.72419 * 8 7 6 10 10 N 1.34776 * 120.00480 * 179.72956 * 8 7 6 11 11 C 1.46496 * 120.00006 * 179.97438 * 10 8 7 12 12 C 1.50706 * 109.47106 * 179.97438 * 11 10 8 13 13 C 1.38236 * 119.99994 * 269.73095 * 12 11 10 14 14 C 1.38240 * 119.99427 * 179.76551 * 13 12 11 15 15 C 1.38235 * 120.00231 * 0.48028 * 14 13 12 16 16 C 1.50696 * 119.99602 * 179.76924 * 15 14 13 17 17 N 1.46499 * 109.47149 * 270.02068 * 16 15 14 18 18 C 1.36937 * 120.00316 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99472 * 0.02562 * 18 17 16 20 20 C 1.38806 * 120.00367 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00096 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00142 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47282 * 89.99660 * 22 20 18 24 24 H 1.48500 * 109.47364 * 210.00063 * 22 20 18 25 25 H 1.48507 * 109.46821 * 329.99866 * 22 20 18 26 26 C 1.38230 * 119.99928 * 359.79635 * 15 14 13 27 27 C 1.38235 * 120.00199 * 359.94838 * 26 15 14 28 28 N 1.31490 * 119.55039 * 304.99975 * 3 2 1 29 29 H 1.09007 * 109.47108 * 60.00090 * 1 2 3 30 30 H 1.08999 * 109.47416 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47168 * 300.00150 * 1 2 3 32 32 H 1.09002 * 109.46967 * 240.00316 * 2 1 3 33 33 H 1.09003 * 109.46841 * 120.00319 * 2 1 3 34 34 H 1.08000 * 120.33269 * 359.97438 * 4 3 2 35 35 H 1.07995 * 120.75834 * 180.02562 * 5 4 3 36 36 H 1.07999 * 120.46873 * 180.26807 * 6 5 4 37 37 H 0.96998 * 119.99803 * 359.97438 * 10 8 7 38 38 H 1.09001 * 109.47001 * 59.99676 * 11 10 8 39 39 H 1.09000 * 109.47574 * 299.99892 * 11 10 8 40 40 H 1.07997 * 120.00153 * 359.97438 * 13 12 11 41 41 H 1.08004 * 119.99453 * 180.24881 * 14 13 12 42 42 H 1.08992 * 109.47800 * 30.02452 * 16 15 14 43 43 H 1.09001 * 109.46952 * 150.02534 * 16 15 14 44 44 H 0.97002 * 120.00016 * 0.02562 * 17 16 15 45 45 H 0.97001 * 119.99692 * 179.97438 * 21 20 18 46 46 H 1.08001 * 120.00304 * 179.97438 * 26 15 14 47 47 H 1.07998 * 120.00589 * 180.02562 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9125 1.8345 0.9875 5 6 3.3715 3.1422 0.9839 6 6 2.9338 3.9939 -0.0186 7 6 2.0452 3.5112 -0.9762 8 6 1.5643 4.4100 -2.0515 9 8 1.9415 5.5644 -2.0923 10 7 0.7085 3.9472 -2.9842 11 6 0.2326 4.8361 -4.0470 12 6 -0.7054 4.0797 -4.9521 13 6 -0.2112 3.4117 -6.0568 14 6 -1.0711 2.7139 -6.8843 15 6 -2.4263 2.6922 -6.6125 16 6 -3.3642 1.9358 -7.5175 17 7 -3.8401 2.8246 -8.5804 18 6 -4.7096 2.3544 -9.5281 19 1 -5.0448 1.3284 -9.4916 20 6 -5.1601 3.1964 -10.5354 21 7 -5.9955 2.7443 -11.4466 22 14 -4.5798 4.9708 -10.5988 23 1 -3.3448 5.0587 -11.4187 24 1 -5.6385 5.8165 -11.2064 25 1 -4.2948 5.4479 -9.2217 26 6 -2.9211 3.3650 -5.5110 27 6 -2.0607 4.0584 -4.6805 28 7 1.6299 2.2510 -0.9370 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.2369 1.1450 1.7527 35 1 4.0581 3.4886 1.7422 36 1 3.2745 5.0181 -0.0546 37 1 0.4076 3.0256 -2.9517 38 1 1.0825 5.1979 -4.6257 39 1 -0.2925 5.6827 -3.6047 40 1 0.8470 3.4323 -6.2716 41 1 -0.6845 2.1887 -7.7452 42 1 -2.8388 1.0895 -7.9598 43 1 -4.2141 1.5737 -6.9390 44 1 -3.5393 3.7462 -8.6129 45 1 -6.3106 3.3329 -12.1503 46 1 -3.9800 3.3484 -5.2988 47 1 -2.4471 4.5837 -3.8197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495490038.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:44 Heat of formation + Delta-G solvation = 29.229211 kcal Electronic energy + Delta-G solvation = -27272.866273 eV Core-core repulsion = 23420.365975 eV Total energy + Delta-G solvation = -3852.500298 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.10664 -39.73859 -38.99421 -35.72844 -34.67295 -34.50113 -33.10968 -32.02700 -30.82478 -30.65908 -30.30677 -27.53021 -25.46108 -24.86321 -23.93365 -22.59636 -22.10454 -21.80467 -20.97790 -20.57332 -18.53611 -17.81976 -17.03399 -16.60331 -15.95664 -15.86734 -15.71134 -15.31109 -15.08263 -14.81401 -14.64271 -14.57930 -14.22414 -13.96470 -13.68775 -13.58417 -13.31925 -12.97979 -12.95528 -12.74003 -12.45318 -12.41739 -12.17748 -11.99946 -11.89928 -11.54064 -11.48817 -10.95128 -10.80573 -10.67475 -10.61622 -10.42018 -10.15161 -9.93962 -9.61381 -9.53777 -9.27906 -8.93316 -8.79599 -8.57009 -7.26262 -5.78484 -3.14664 0.20611 0.71669 1.27922 1.53328 2.38575 2.87446 3.38267 3.42120 3.42566 3.45748 3.58269 3.90358 4.10357 4.35175 4.47648 4.56893 4.58695 4.58840 4.78266 4.86064 4.89476 4.92257 4.98944 5.09289 5.23783 5.23988 5.31985 5.43325 5.48922 5.51600 5.52271 5.61079 5.63419 5.68040 5.72908 5.74961 5.88614 6.06004 6.07079 6.09017 6.13526 6.37935 6.50203 6.51996 6.59638 6.98273 7.09437 7.12911 7.40928 7.87768 7.96593 8.40237 9.18779 9.91059 10.10931 11.39565 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019211 B = 0.002001 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.177776 B =13992.832791 C =15080.674839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.073 4.073 3 C 0.131 3.869 4 C -0.150 4.150 5 C -0.079 4.079 6 C -0.119 4.119 7 C 0.085 3.915 8 C 0.569 3.431 9 O -0.535 6.535 10 N -0.702 5.702 11 C 0.163 3.837 12 C -0.123 4.123 13 C -0.102 4.102 14 C -0.108 4.108 15 C -0.070 4.070 16 C 0.189 3.811 17 N -0.750 5.750 18 C -0.246 4.246 19 H 0.091 0.909 20 C 0.006 3.994 21 N -0.933 5.933 22 Si 0.883 3.117 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.276 1.276 26 C -0.107 4.107 27 C -0.102 4.102 28 N -0.455 5.455 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.148 0.852 37 H 0.413 0.587 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.120 0.880 41 H 0.126 0.874 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.363 0.637 45 H 0.260 0.740 46 H 0.126 0.874 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.268 -2.602 29.057 35.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.009 4.009 4 C -0.170 4.170 5 C -0.104 4.104 6 C -0.139 4.139 7 C -0.053 4.053 8 C 0.354 3.646 9 O -0.412 6.412 10 N -0.354 5.354 11 C 0.041 3.959 12 C -0.124 4.124 13 C -0.121 4.121 14 C -0.126 4.126 15 C -0.071 4.071 16 C 0.063 3.937 17 N -0.396 5.396 18 C -0.376 4.376 19 H 0.109 0.891 20 C -0.190 4.190 21 N -0.580 5.580 22 Si 0.714 3.286 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.202 1.202 26 C -0.126 4.126 27 C -0.121 4.121 28 N -0.167 5.167 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.158 0.842 35 H 0.160 0.840 36 H 0.166 0.834 37 H 0.250 0.750 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.138 0.862 41 H 0.144 0.856 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.196 0.804 45 H 0.070 0.930 46 H 0.144 0.856 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 19.777 -2.181 28.198 34.511 hybrid contribution 0.787 1.200 0.481 1.513 sum 20.564 -0.982 28.679 35.303 Atomic orbital electron populations 1.21694 0.93723 1.02147 1.02805 1.20530 0.97365 0.89797 1.03436 1.21339 0.93248 0.96206 0.90143 1.22242 0.98002 0.96966 0.99748 1.21641 0.98061 0.93180 0.97558 1.22127 0.96195 1.01902 0.93726 1.21112 0.96934 0.91095 0.96203 1.17898 0.79124 0.86378 0.81200 1.90799 1.57982 1.17424 1.75002 1.45974 1.45902 1.16172 1.27305 1.20239 0.96634 0.91787 0.87249 1.19680 0.94067 1.01408 0.97231 1.21014 0.99552 0.97032 0.94484 1.21159 0.93024 0.99218 0.99215 1.20435 0.94557 0.96825 0.95282 1.19667 0.93548 0.92189 0.88316 1.42688 1.56038 1.10183 1.30697 1.19057 1.18114 0.97893 1.02535 0.89085 1.24659 0.99195 0.97759 0.97379 1.69704 1.36149 1.35480 1.16704 0.86557 0.78188 0.86341 0.77557 1.21003 1.21652 1.20247 1.21153 0.99954 0.96893 0.94570 1.21011 0.92603 0.99085 0.99382 1.67312 1.23011 1.02566 1.23814 0.91362 0.92010 0.92913 0.89631 0.90161 0.84223 0.83950 0.83407 0.75014 0.90442 0.90441 0.86193 0.85599 0.94497 0.94552 0.80441 0.93006 0.85633 0.86207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.77 37.16 0.36 -0.51 16 2 C -0.07 -0.39 6.33 -27.88 -0.18 -0.57 16 3 C 0.13 0.96 6.18 -82.60 -0.51 0.45 16 4 C -0.15 -0.84 9.72 -39.32 -0.38 -1.22 16 5 C -0.08 -0.45 10.17 -39.30 -0.40 -0.85 16 6 C -0.12 -0.98 9.63 -39.05 -0.38 -1.35 16 7 C 0.08 0.86 6.75 -83.01 -0.56 0.30 16 8 C 0.57 6.71 7.81 -12.18 -0.10 6.62 16 9 O -0.54 -7.68 16.32 5.35 0.09 -7.59 16 10 N -0.70 -7.46 5.54 -62.33 -0.35 -7.80 16 11 C 0.16 1.78 5.80 -5.19 -0.03 1.75 16 12 C -0.12 -1.47 5.25 -104.62 -0.55 -2.02 16 13 C -0.10 -1.28 9.70 -39.58 -0.38 -1.66 16 14 C -0.11 -1.56 9.70 -39.58 -0.38 -1.94 16 15 C -0.07 -1.13 5.25 -104.63 -0.55 -1.68 16 16 C 0.19 3.66 6.38 -5.20 -0.03 3.63 16 17 N -0.75 -18.03 5.40 -61.09 -0.33 -18.36 16 18 C -0.25 -7.01 10.47 -15.06 -0.16 -7.17 16 19 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 20 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 21 N -0.93 -29.39 13.97 55.49 0.78 -28.61 16 22 Si 0.88 22.44 27.74 -169.99 -4.71 17.72 16 23 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 25 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16 26 C -0.11 -1.56 9.70 -39.59 -0.38 -1.94 16 27 C -0.10 -1.28 9.70 -39.58 -0.38 -1.66 16 28 N -0.45 -4.27 9.05 -6.06 -0.05 -4.32 16 29 H 0.07 0.51 7.94 -51.92 -0.41 0.10 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.26 7.87 -51.93 -0.41 -0.15 16 34 H 0.14 0.38 7.95 -52.49 -0.42 -0.03 16 35 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 36 H 0.15 1.15 7.64 -52.49 -0.40 0.75 16 37 H 0.41 4.13 7.79 -40.82 -0.32 3.81 16 38 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 39 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 40 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.13 1.75 8.06 -52.48 -0.42 1.33 16 42 H 0.04 0.71 8.08 -51.93 -0.42 0.29 16 43 H 0.04 0.70 8.09 -51.93 -0.42 0.28 16 44 H 0.36 8.68 5.52 -40.82 -0.23 8.45 16 45 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 46 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 47 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 400.71 15.07 6.04 6.04 Total: -1.00 -34.00 400.71 -10.47 -44.47 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.84 Total: 8.21 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -5.09 Total: -9.76 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: 0.05 Total: -59.09 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: 0.09 Total: -7.59 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.71 Total: 17.72 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.00 -10.47 -44.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495490038.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.698 kcal (2) G-P(sol) polarization free energy of solvation -34.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds