Wall clock time and date at job start Tue Mar 31 2020 22:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47170 * 2 1 4 4 C 1.38598 * 119.54457 * 125.01993 * 3 2 1 5 5 C 1.38590 * 119.34938 * 180.02562 * 4 3 2 6 6 C 1.38638 * 118.48514 * 359.74641 * 5 4 3 7 7 C 1.39268 * 119.06110 * 0.47640 * 6 5 4 8 8 C 1.48165 * 119.72570 * 179.79110 * 7 6 5 9 9 O 1.21522 * 119.99606 * 359.72419 * 8 7 6 10 10 N 1.34776 * 120.00480 * 179.72956 * 8 7 6 11 11 C 1.46496 * 120.00006 * 179.97438 * 10 8 7 12 12 C 1.50706 * 109.47106 * 179.97438 * 11 10 8 13 13 C 1.38236 * 119.99994 * 269.73095 * 12 11 10 14 14 C 1.38240 * 119.99427 * 179.76551 * 13 12 11 15 15 C 1.38235 * 120.00231 * 0.48028 * 14 13 12 16 16 C 1.50696 * 119.99602 * 179.76924 * 15 14 13 17 17 N 1.46499 * 109.47149 * 270.02068 * 16 15 14 18 18 C 1.36937 * 120.00316 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99472 * 0.02562 * 18 17 16 20 20 C 1.38806 * 120.00367 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00096 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00142 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47282 * 89.99660 * 22 20 18 24 24 H 1.48500 * 109.47364 * 210.00063 * 22 20 18 25 25 H 1.48507 * 109.46821 * 329.99866 * 22 20 18 26 26 C 1.38230 * 119.99928 * 359.79635 * 15 14 13 27 27 C 1.38235 * 120.00199 * 359.94838 * 26 15 14 28 28 N 1.31490 * 119.55039 * 304.99975 * 3 2 1 29 29 H 1.09007 * 109.47108 * 60.00090 * 1 2 3 30 30 H 1.08999 * 109.47416 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47168 * 300.00150 * 1 2 3 32 32 H 1.09002 * 109.46967 * 240.00316 * 2 1 3 33 33 H 1.09003 * 109.46841 * 120.00319 * 2 1 3 34 34 H 1.08000 * 120.33269 * 359.97438 * 4 3 2 35 35 H 1.07995 * 120.75834 * 180.02562 * 5 4 3 36 36 H 1.07999 * 120.46873 * 180.26807 * 6 5 4 37 37 H 0.96998 * 119.99803 * 359.97438 * 10 8 7 38 38 H 1.09001 * 109.47001 * 59.99676 * 11 10 8 39 39 H 1.09000 * 109.47574 * 299.99892 * 11 10 8 40 40 H 1.07997 * 120.00153 * 359.97438 * 13 12 11 41 41 H 1.08004 * 119.99453 * 180.24881 * 14 13 12 42 42 H 1.08992 * 109.47800 * 30.02452 * 16 15 14 43 43 H 1.09001 * 109.46952 * 150.02534 * 16 15 14 44 44 H 0.97002 * 120.00016 * 0.02562 * 17 16 15 45 45 H 0.97001 * 119.99692 * 179.97438 * 21 20 18 46 46 H 1.08001 * 120.00304 * 179.97438 * 26 15 14 47 47 H 1.07998 * 120.00589 * 180.02562 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9125 1.8345 0.9875 5 6 3.3715 3.1422 0.9839 6 6 2.9338 3.9939 -0.0186 7 6 2.0452 3.5112 -0.9762 8 6 1.5643 4.4100 -2.0515 9 8 1.9415 5.5644 -2.0923 10 7 0.7085 3.9472 -2.9842 11 6 0.2326 4.8361 -4.0470 12 6 -0.7054 4.0797 -4.9521 13 6 -0.2112 3.4117 -6.0568 14 6 -1.0711 2.7139 -6.8843 15 6 -2.4263 2.6922 -6.6125 16 6 -3.3642 1.9358 -7.5175 17 7 -3.8401 2.8246 -8.5804 18 6 -4.7096 2.3544 -9.5281 19 1 -5.0448 1.3284 -9.4916 20 6 -5.1601 3.1964 -10.5354 21 7 -5.9955 2.7443 -11.4466 22 14 -4.5798 4.9708 -10.5988 23 1 -3.3448 5.0587 -11.4187 24 1 -5.6385 5.8165 -11.2064 25 1 -4.2948 5.4479 -9.2217 26 6 -2.9211 3.3650 -5.5110 27 6 -2.0607 4.0584 -4.6805 28 7 1.6299 2.2510 -0.9370 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.2369 1.1450 1.7527 35 1 4.0581 3.4886 1.7422 36 1 3.2745 5.0181 -0.0546 37 1 0.4076 3.0256 -2.9517 38 1 1.0825 5.1979 -4.6257 39 1 -0.2925 5.6827 -3.6047 40 1 0.8470 3.4323 -6.2716 41 1 -0.6845 2.1887 -7.7452 42 1 -2.8388 1.0895 -7.9598 43 1 -4.2141 1.5737 -6.9390 44 1 -3.5393 3.7462 -8.6129 45 1 -6.3106 3.3329 -12.1503 46 1 -3.9800 3.3484 -5.2988 47 1 -2.4471 4.5837 -3.8197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495490038.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:43 Heat of formation + Delta-G solvation = 7.948069 kcal Electronic energy + Delta-G solvation = -27273.789092 eV Core-core repulsion = 23420.365975 eV Total energy + Delta-G solvation = -3853.423117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.75037 -40.68374 -39.93747 -37.11595 -35.90551 -35.13995 -34.02429 -33.47221 -32.10470 -31.89196 -30.94623 -28.80965 -26.50359 -25.57846 -24.89848 -23.78586 -23.66534 -22.36216 -21.79511 -21.73460 -19.88091 -19.29083 -17.71647 -17.24602 -16.88511 -16.78762 -16.64564 -16.59274 -16.21117 -16.09342 -15.62891 -15.43068 -15.21811 -14.86597 -14.76146 -14.58106 -14.38132 -14.22025 -14.06831 -14.01458 -13.48354 -13.26056 -13.23292 -13.17473 -12.88101 -12.85557 -12.38685 -12.20325 -11.96872 -11.94695 -11.93869 -11.79136 -11.49041 -11.04311 -10.92581 -10.53962 -10.30035 -9.96330 -9.85874 -9.70702 -9.34601 -8.05587 -5.39625 -0.38687 0.18151 0.21820 0.46718 1.36523 1.38505 1.46205 1.63964 2.04313 2.45574 2.77876 2.80551 3.03499 3.25640 3.57651 3.63815 3.82802 3.85186 3.85878 3.99543 4.00982 4.08700 4.10202 4.23972 4.37851 4.40726 4.48476 4.52182 4.55239 4.63139 4.65361 4.85873 4.86761 4.87604 5.03419 5.04048 5.09189 5.13152 5.16300 5.21300 5.26803 5.40511 5.42447 5.56176 5.63164 5.72146 5.75936 6.01431 6.18131 6.32230 6.77255 7.03645 7.04471 7.78649 7.98845 9.15570 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019211 B = 0.002001 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.177776 B =13992.832791 C =15080.674839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.071 4.071 3 C 0.115 3.885 4 C -0.138 4.138 5 C -0.074 4.074 6 C -0.127 4.127 7 C 0.057 3.943 8 C 0.568 3.432 9 O -0.569 6.569 10 N -0.697 5.697 11 C 0.167 3.833 12 C -0.110 4.110 13 C -0.098 4.098 14 C -0.114 4.114 15 C -0.090 4.090 16 C 0.189 3.811 17 N -0.752 5.752 18 C -0.237 4.237 19 H 0.060 0.940 20 C -0.061 4.061 21 N -0.981 5.981 22 Si 0.953 3.047 23 H -0.277 1.277 24 H -0.293 1.293 25 H -0.256 1.256 26 C -0.114 4.114 27 C -0.098 4.098 28 N -0.472 5.472 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.176 0.824 35 H 0.176 0.824 36 H 0.145 0.855 37 H 0.417 0.583 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.142 0.858 41 H 0.127 0.873 42 H 0.036 0.964 43 H 0.035 0.965 44 H 0.365 0.635 45 H 0.259 0.741 46 H 0.126 0.874 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.733 -2.104 32.037 39.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.026 4.026 4 C -0.157 4.157 5 C -0.099 4.099 6 C -0.149 4.149 7 C -0.081 4.081 8 C 0.354 3.646 9 O -0.448 6.448 10 N -0.347 5.347 11 C 0.045 3.955 12 C -0.111 4.111 13 C -0.116 4.116 14 C -0.132 4.132 15 C -0.091 4.091 16 C 0.064 3.936 17 N -0.398 5.398 18 C -0.367 4.367 19 H 0.078 0.922 20 C -0.252 4.252 21 N -0.631 5.631 22 Si 0.781 3.219 23 H -0.203 1.203 24 H -0.219 1.219 25 H -0.181 1.181 26 C -0.133 4.133 27 C -0.116 4.116 28 N -0.185 5.185 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.127 0.873 34 H 0.193 0.807 35 H 0.193 0.807 36 H 0.163 0.837 37 H 0.254 0.746 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.159 0.841 41 H 0.145 0.855 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.198 0.802 45 H 0.068 0.932 46 H 0.144 0.856 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 22.262 -1.708 31.217 38.380 hybrid contribution 0.074 0.896 -0.299 0.948 sum 22.336 -0.812 30.918 38.151 Atomic orbital electron populations 1.21670 0.94541 1.02414 1.01647 1.20607 0.96589 0.88916 1.04750 1.21810 0.93743 0.96737 0.90262 1.22666 0.96287 0.97372 0.99424 1.22035 0.97842 0.92880 0.97193 1.22266 0.96064 1.02348 0.94184 1.20947 0.98770 0.91536 0.96802 1.18220 0.78672 0.86247 0.81480 1.90767 1.59263 1.18813 1.75954 1.45908 1.45590 1.16208 1.27013 1.20192 0.96484 0.91675 0.87172 1.19796 0.94041 1.00373 0.96849 1.21213 1.00377 0.96067 0.93951 1.21220 0.92593 0.99658 0.99752 1.20151 0.94634 0.98443 0.95843 1.19718 0.94187 0.92002 0.87703 1.42703 1.55313 1.10883 1.30915 1.19055 1.17869 0.96630 1.03169 0.92163 1.25472 0.99910 1.02550 0.97312 1.69877 1.38176 1.37224 1.17820 0.85432 0.77520 0.80527 0.78466 1.20345 1.21948 1.18121 1.21210 1.00414 0.97119 0.94526 1.21204 0.92573 0.98401 0.99455 1.67248 1.23705 1.02508 1.25025 0.93444 0.91019 0.93124 0.89770 0.87341 0.80679 0.80665 0.83692 0.74634 0.90182 0.90218 0.84065 0.85469 0.94567 0.94689 0.80162 0.93222 0.85598 0.84135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.77 71.98 0.70 -0.84 16 2 C -0.07 -0.59 6.33 29.85 0.19 -0.40 16 3 C 0.12 1.45 6.18 42.70 0.26 1.71 16 4 C -0.14 -1.07 9.72 22.44 0.22 -0.85 16 5 C -0.07 -0.64 10.17 22.45 0.23 -0.41 16 6 C -0.13 -1.96 9.63 22.61 0.22 -1.74 16 7 C 0.06 1.12 6.75 41.89 0.28 1.40 16 8 C 0.57 13.24 7.81 86.88 0.68 13.92 16 9 O -0.57 -16.32 16.32 -3.79 -0.06 -16.38 16 10 N -0.70 -14.18 5.54 -469.39 -2.60 -16.78 16 11 C 0.17 3.37 5.80 85.64 0.50 3.86 16 12 C -0.11 -2.39 5.25 -19.86 -0.10 -2.50 16 13 C -0.10 -2.24 9.70 22.27 0.22 -2.02 16 14 C -0.11 -3.15 9.70 22.27 0.22 -2.93 16 15 C -0.09 -2.84 5.25 -19.87 -0.10 -2.94 16 16 C 0.19 7.37 6.38 85.63 0.55 7.92 16 17 N -0.75 -36.10 5.40 -347.20 -1.87 -37.98 16 18 C -0.24 -13.72 10.47 84.03 0.88 -12.84 16 19 H 0.06 3.79 8.06 -2.91 -0.02 3.77 16 20 C -0.06 -3.63 5.50 84.86 0.47 -3.17 16 21 N -0.98 -63.38 13.97 21.65 0.30 -63.08 16 22 Si 0.95 46.50 27.74 68.60 1.90 48.40 16 23 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 24 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 25 H -0.26 -11.52 6.52 99.48 0.65 -10.87 16 26 C -0.11 -3.18 9.70 22.27 0.22 -2.97 16 27 C -0.10 -2.26 9.70 22.27 0.22 -2.04 16 28 N -0.47 -8.43 9.05 -173.09 -1.57 -10.00 16 29 H 0.05 0.70 7.94 -2.38 -0.02 0.68 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.11 0.28 7.87 -2.39 -0.02 0.26 16 34 H 0.18 0.07 7.95 -2.91 -0.02 0.05 16 35 H 0.18 0.29 8.06 -2.91 -0.02 0.26 16 36 H 0.15 2.21 7.64 -2.91 -0.02 2.18 16 37 H 0.42 7.98 7.79 -92.71 -0.72 7.26 16 38 H 0.08 1.61 8.08 -2.39 -0.02 1.59 16 39 H 0.08 1.61 8.09 -2.39 -0.02 1.59 16 40 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 41 H 0.13 3.43 8.06 -2.91 -0.02 3.40 16 42 H 0.04 1.41 8.08 -2.39 -0.02 1.39 16 43 H 0.04 1.37 8.09 -2.39 -0.02 1.35 16 44 H 0.37 17.05 5.52 -92.71 -0.51 16.54 16 45 H 0.26 15.91 8.31 -92.71 -0.77 15.13 16 46 H 0.13 3.44 8.06 -2.91 -0.02 3.41 16 47 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -75.35 400.71 1.63 -73.73 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: -0.30 Total: 28.94 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 5.83 Total: -6.85 kcal Atomic # 7 Polarization: -122.09 SS G_CDS: -5.74 Total: -127.83 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.06 Total: -16.38 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.90 Total: 48.40 kcal Total: -75.35 1.63 -73.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495490038.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.674 kcal (2) G-P(sol) polarization free energy of solvation -75.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds