Wall clock time and date at job start Tue Mar 31 2020 22:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47374 * 2 1 4 4 C 1.38254 * 119.99957 * 265.25351 * 3 2 1 5 5 C 1.38208 * 119.99964 * 180.27463 * 4 3 2 6 6 C 1.38261 * 120.00103 * 359.74563 * 5 4 3 7 7 C 1.38216 * 119.99768 * 359.97438 * 6 5 4 8 8 C 1.38215 * 119.99758 * 85.00112 * 3 2 1 9 9 C 1.50697 * 120.00481 * 359.97438 * 8 3 2 10 10 H 1.08999 * 109.46915 * 41.93607 * 9 8 3 11 11 C 1.52994 * 109.47367 * 161.93354 * 9 8 3 12 12 N 1.46497 * 109.47539 * 175.00050 * 11 9 8 13 13 C 1.34769 * 120.00262 * 180.02562 * 12 11 9 14 14 O 1.21547 * 120.00347 * 0.02562 * 13 12 11 15 15 C 1.47840 * 119.99885 * 180.02562 * 13 12 11 16 16 C 1.40027 * 120.55768 * 180.27577 * 15 13 12 17 17 C 1.38362 * 118.28820 * 180.23987 * 16 15 13 18 18 C 1.38350 * 119.30202 * 359.45812 * 17 16 15 19 19 N 1.31928 * 121.07991 * 0.30485 * 18 17 16 20 20 C 1.31696 * 121.87870 * 359.97206 * 19 18 17 21 21 N 1.46502 * 109.47240 * 281.93686 * 9 8 3 22 22 C 1.36934 * 120.00031 * 303.64893 * 21 9 8 23 23 H 1.08002 * 119.99687 * 5.17961 * 22 21 9 24 24 C 1.38811 * 120.00266 * 185.16984 * 22 21 9 25 25 N 1.31626 * 119.99759 * 0.02562 * 24 22 21 26 26 Si 1.86791 * 120.00276 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47101 * 90.00199 * 26 24 22 28 28 H 1.48504 * 109.47266 * 210.00496 * 26 24 22 29 29 H 1.48503 * 109.47324 * 330.00516 * 26 24 22 30 30 H 1.08995 * 109.46884 * 60.00377 * 1 2 3 31 31 H 1.09000 * 109.47132 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46508 * 299.99904 * 1 2 3 33 33 H 1.09000 * 109.47152 * 239.99709 * 2 1 3 34 34 H 1.09005 * 109.46810 * 120.00159 * 2 1 3 35 35 H 1.07997 * 120.00088 * 0.04098 * 4 3 2 36 36 H 1.08003 * 120.00047 * 179.76976 * 5 4 3 37 37 H 1.07996 * 119.99814 * 179.97438 * 6 5 4 38 38 H 1.07997 * 120.00072 * 179.97438 * 7 6 5 39 39 H 1.09005 * 109.47048 * 55.00501 * 11 9 8 40 40 H 1.08997 * 109.47371 * 295.00779 * 11 9 8 41 41 H 0.97000 * 119.99649 * 0.02562 * 12 11 9 42 42 H 1.07997 * 120.86054 * 359.97438 * 16 15 13 43 43 H 1.07994 * 120.34839 * 179.73882 * 17 16 15 44 44 H 1.07999 * 119.46560 * 180.27408 * 18 17 16 45 45 H 1.08006 * 119.71752 * 180.02562 * 20 19 18 46 46 H 0.96996 * 119.99646 * 123.64920 * 21 9 8 47 47 H 0.96991 * 119.99873 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3563 2.0395 -1.1932 5 6 2.8224 3.3406 -1.1927 6 6 2.9599 4.0253 0.0005 7 6 2.6306 3.4087 1.1929 8 6 2.1645 2.1071 1.1925 9 6 1.8055 1.4348 2.4925 10 1 2.1744 0.4092 2.4852 11 6 2.4440 2.1981 3.6547 12 7 1.9990 1.6171 4.9237 13 6 2.4358 2.1314 6.0903 14 8 3.1987 3.0777 6.0896 15 6 1.9871 1.5447 7.3710 16 6 2.4291 2.0734 8.5899 17 6 1.9836 1.4847 9.7601 18 6 1.1151 0.4101 9.6894 19 7 0.7114 -0.0639 8.5263 20 6 1.1115 0.4586 7.3855 21 7 0.3494 1.4289 2.6535 22 6 -0.3484 2.6065 2.6162 23 1 0.1623 3.5297 2.3851 24 6 -1.7121 2.6137 2.8752 25 7 -2.3344 1.4887 3.1572 26 14 -2.6639 4.2202 2.8251 27 1 -3.1758 4.4496 1.4500 28 1 -3.8050 4.1494 3.7728 29 1 -1.7675 5.3390 3.2125 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.2486 1.5048 -2.1253 36 1 3.0789 3.8226 -2.1246 37 1 3.3245 5.0418 0.0009 38 1 2.7384 3.9433 2.1251 39 1 2.1446 3.2453 3.6097 40 1 3.5293 2.1272 3.5833 41 1 1.3899 0.8622 4.9244 42 1 3.1039 2.9163 8.6160 43 1 2.3068 1.8629 10.7186 44 1 0.7622 -0.0486 10.6012 45 1 0.7586 0.0429 6.4532 46 1 -0.1204 0.5907 2.7865 47 1 -3.2872 1.4938 3.3385 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501015395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:18 Heat of formation + Delta-G solvation = 39.501716 kcal Electronic energy + Delta-G solvation = -29494.299904 eV Core-core repulsion = 25642.245055 eV Total energy + Delta-G solvation = -3852.054848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.45483 -39.51655 -38.57613 -35.97270 -33.93017 -33.29553 -32.49959 -32.16310 -31.17929 -29.74713 -28.85577 -27.22238 -24.88130 -23.99871 -23.46209 -23.15320 -22.57155 -20.72926 -20.16534 -19.56483 -17.92371 -17.49865 -16.76533 -16.33667 -15.97292 -15.50456 -15.17191 -14.90174 -14.76275 -14.60571 -14.20638 -13.98333 -13.61902 -13.37363 -13.27204 -13.13547 -13.08235 -12.74852 -12.56911 -12.39296 -12.19762 -12.03482 -11.63547 -11.21648 -11.18259 -11.04273 -10.86034 -10.73752 -10.27780 -10.13546 -10.00586 -9.94725 -9.92227 -9.71991 -9.36454 -9.24533 -8.99476 -8.54917 -8.29526 -8.08245 -7.11889 -5.87719 -3.18498 0.68526 1.18279 1.88097 1.89903 3.08185 3.39034 3.45881 3.46736 3.50088 3.93448 4.24118 4.31538 4.54741 4.73300 4.85129 4.90407 5.04883 5.17952 5.27253 5.33861 5.36735 5.40963 5.51592 5.56296 5.59657 5.63491 5.72797 5.81651 5.97539 6.00401 6.01818 6.06439 6.10328 6.11545 6.30551 6.45185 6.50934 6.51653 6.56493 6.58510 6.66604 6.83806 6.95782 7.03277 7.23567 7.34945 7.51913 7.68643 7.82784 7.90228 8.27646 8.52214 9.41917 9.86737 10.24085 11.33293 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010148 B = 0.003895 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.521914 B = 7186.811702 C = 8213.265314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.076 4.076 3 C -0.063 4.063 4 C -0.125 4.125 5 C -0.131 4.131 6 C -0.130 4.130 7 C -0.111 4.111 8 C -0.061 4.061 9 C 0.196 3.804 10 H 0.072 0.928 11 C 0.107 3.893 12 N -0.692 5.692 13 C 0.558 3.442 14 O -0.550 6.550 15 C -0.178 4.178 16 C -0.021 4.021 17 C -0.185 4.185 18 C 0.114 3.886 19 N -0.486 5.486 20 C 0.140 3.860 21 N -0.704 5.704 22 C -0.235 4.235 23 H 0.071 0.929 24 C -0.002 4.002 25 N -0.927 5.927 26 Si 0.898 3.102 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.111 0.889 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.121 0.879 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.402 0.598 42 H 0.145 0.855 43 H 0.139 0.861 44 H 0.158 0.842 45 H 0.163 0.837 46 H 0.388 0.612 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.393 -3.445 3.459 11.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.113 4.113 3 C -0.063 4.063 4 C -0.143 4.143 5 C -0.149 4.149 6 C -0.148 4.148 7 C -0.130 4.130 8 C -0.064 4.064 9 C 0.085 3.915 10 H 0.090 0.910 11 C -0.019 4.019 12 N -0.342 5.342 13 C 0.344 3.656 14 O -0.430 6.430 15 C -0.184 4.184 16 C -0.048 4.048 17 C -0.205 4.205 18 C -0.043 4.043 19 N -0.195 5.195 20 C -0.018 4.018 21 N -0.345 5.345 22 C -0.366 4.366 23 H 0.089 0.911 24 C -0.198 4.198 25 N -0.575 5.575 26 Si 0.729 3.271 27 H -0.217 1.217 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.129 0.871 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.139 0.861 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.239 0.761 42 H 0.163 0.837 43 H 0.157 0.843 44 H 0.175 0.825 45 H 0.180 0.820 46 H 0.224 0.776 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.242 -3.344 3.435 11.308 hybrid contribution -0.688 1.277 -0.147 1.458 sum 9.553 -2.067 3.288 10.313 Atomic orbital electron populations 1.22077 0.93542 1.01091 1.05453 1.20460 0.97396 0.92318 1.01119 1.19654 0.97820 0.96413 0.92443 1.20883 1.01001 0.95267 0.97141 1.20940 1.01425 0.95007 0.97518 1.21009 1.01600 0.99390 0.92848 1.21167 0.98950 0.94849 0.98017 1.20208 0.96278 0.94256 0.95632 1.19380 0.86932 0.96317 0.88862 0.90961 1.22029 0.97213 0.99397 0.83250 1.45639 1.47942 1.35365 1.05253 1.17939 0.81026 0.83139 0.83501 1.90731 1.36619 1.28023 1.87622 1.21123 1.02346 0.99798 0.95092 1.21725 0.95128 0.97172 0.90771 1.22125 1.00498 0.98576 0.99254 1.22981 0.92446 0.92653 0.96188 1.67729 1.23360 1.30046 0.98341 1.23123 0.90748 0.90915 0.96990 1.42476 0.99030 1.07561 1.85468 1.19061 0.90475 0.87155 1.39891 0.91075 1.24642 0.96755 0.96540 1.01913 1.69618 1.09448 1.24492 1.53934 0.86329 0.79840 0.83595 0.77298 1.21746 1.21878 1.20810 0.94027 0.93980 0.87090 0.92783 0.91542 0.87028 0.87115 0.86992 0.86073 0.90773 0.92451 0.76101 0.83715 0.84297 0.82481 0.81990 0.77641 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.88 37.16 0.37 -2.46 16 2 C -0.08 -1.14 5.57 -27.88 -0.16 -1.29 16 3 C -0.06 -1.03 5.13 -104.62 -0.54 -1.57 16 4 C -0.12 -1.91 9.68 -39.59 -0.38 -2.29 16 5 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 6 C -0.13 -2.01 10.05 -39.58 -0.40 -2.41 16 7 C -0.11 -1.88 8.53 -39.58 -0.34 -2.22 16 8 C -0.06 -1.05 4.61 -104.62 -0.48 -1.53 16 9 C 0.20 3.33 2.45 -69.09 -0.17 3.16 16 10 H 0.07 1.10 6.56 -51.93 -0.34 0.76 16 11 C 0.11 1.83 4.10 -4.05 -0.02 1.81 16 12 N -0.69 -11.44 5.34 -61.26 -0.33 -11.77 16 13 C 0.56 9.64 7.78 -12.33 -0.10 9.54 16 14 O -0.55 -10.96 16.42 5.32 0.09 -10.87 16 15 C -0.18 -2.66 5.89 -104.82 -0.62 -3.27 16 16 C -0.02 -0.27 9.72 -38.87 -0.38 -0.65 16 17 C -0.18 -1.91 10.10 -39.49 -0.40 -2.30 16 18 C 0.11 1.27 11.17 -17.47 -0.20 1.07 16 19 N -0.49 -6.82 10.35 -12.91 -0.13 -6.95 16 20 C 0.14 2.02 10.71 -17.13 -0.18 1.83 16 21 N -0.70 -14.33 2.75 -54.55 -0.15 -14.48 16 22 C -0.24 -5.69 8.66 -15.06 -0.13 -5.82 16 23 H 0.07 1.79 6.93 -52.49 -0.36 1.43 16 24 C 0.00 -0.05 5.50 -17.43 -0.10 -0.15 16 25 N -0.93 -25.10 13.06 55.49 0.72 -24.37 16 26 Si 0.90 21.81 29.55 -169.99 -5.02 16.79 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.11 2.28 4.76 -51.93 -0.25 2.04 16 33 H 0.05 0.71 8.05 -51.93 -0.42 0.29 16 34 H 0.07 0.94 6.37 -51.93 -0.33 0.61 16 35 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 37 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.12 2.04 5.84 -52.49 -0.31 1.73 16 39 H 0.07 1.45 6.04 -51.93 -0.31 1.13 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.40 6.27 6.20 -40.82 -0.25 6.01 16 42 H 0.15 1.76 7.74 -52.49 -0.41 1.36 16 43 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.16 1.22 8.06 -52.49 -0.42 0.79 16 45 H 0.16 2.19 6.42 -52.48 -0.34 1.85 16 46 H 0.39 8.35 7.21 -40.82 -0.29 8.05 16 47 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 383.52 15.07 5.78 5.78 Total: -1.00 -29.74 383.52 -9.78 -39.51 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: -6.13 Total: 17.24 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -4.60 Total: -10.88 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.11 Total: -57.57 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.74 -9.78 -39.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501015395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.014 kcal (2) G-P(sol) polarization free energy of solvation -29.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds