Wall clock time and date at job start Tue Mar 31 2020 22:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47374 * 2 1 4 4 C 1.38254 * 119.99957 * 265.25351 * 3 2 1 5 5 C 1.38208 * 119.99964 * 180.27463 * 4 3 2 6 6 C 1.38261 * 120.00103 * 359.74563 * 5 4 3 7 7 C 1.38216 * 119.99768 * 359.97438 * 6 5 4 8 8 C 1.38215 * 119.99758 * 85.00112 * 3 2 1 9 9 C 1.50697 * 120.00481 * 359.97438 * 8 3 2 10 10 H 1.08999 * 109.46915 * 41.93607 * 9 8 3 11 11 C 1.52994 * 109.47367 * 161.93354 * 9 8 3 12 12 N 1.46497 * 109.47539 * 175.00050 * 11 9 8 13 13 C 1.34769 * 120.00262 * 180.02562 * 12 11 9 14 14 O 1.21547 * 120.00347 * 0.02562 * 13 12 11 15 15 C 1.47840 * 119.99885 * 180.02562 * 13 12 11 16 16 C 1.40027 * 120.55768 * 180.27577 * 15 13 12 17 17 C 1.38362 * 118.28820 * 180.23987 * 16 15 13 18 18 C 1.38350 * 119.30202 * 359.45812 * 17 16 15 19 19 N 1.31928 * 121.07991 * 0.30485 * 18 17 16 20 20 C 1.31696 * 121.87870 * 359.97206 * 19 18 17 21 21 N 1.46502 * 109.47240 * 281.93686 * 9 8 3 22 22 C 1.36934 * 120.00031 * 303.64893 * 21 9 8 23 23 H 1.08002 * 119.99687 * 5.17961 * 22 21 9 24 24 C 1.38811 * 120.00266 * 185.16984 * 22 21 9 25 25 N 1.31626 * 119.99759 * 0.02562 * 24 22 21 26 26 Si 1.86791 * 120.00276 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47101 * 90.00199 * 26 24 22 28 28 H 1.48504 * 109.47266 * 210.00496 * 26 24 22 29 29 H 1.48503 * 109.47324 * 330.00516 * 26 24 22 30 30 H 1.08995 * 109.46884 * 60.00377 * 1 2 3 31 31 H 1.09000 * 109.47132 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46508 * 299.99904 * 1 2 3 33 33 H 1.09000 * 109.47152 * 239.99709 * 2 1 3 34 34 H 1.09005 * 109.46810 * 120.00159 * 2 1 3 35 35 H 1.07997 * 120.00088 * 0.04098 * 4 3 2 36 36 H 1.08003 * 120.00047 * 179.76976 * 5 4 3 37 37 H 1.07996 * 119.99814 * 179.97438 * 6 5 4 38 38 H 1.07997 * 120.00072 * 179.97438 * 7 6 5 39 39 H 1.09005 * 109.47048 * 55.00501 * 11 9 8 40 40 H 1.08997 * 109.47371 * 295.00779 * 11 9 8 41 41 H 0.97000 * 119.99649 * 0.02562 * 12 11 9 42 42 H 1.07997 * 120.86054 * 359.97438 * 16 15 13 43 43 H 1.07994 * 120.34839 * 179.73882 * 17 16 15 44 44 H 1.07999 * 119.46560 * 180.27408 * 18 17 16 45 45 H 1.08006 * 119.71752 * 180.02562 * 20 19 18 46 46 H 0.96996 * 119.99646 * 123.64920 * 21 9 8 47 47 H 0.96991 * 119.99873 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3563 2.0395 -1.1932 5 6 2.8224 3.3406 -1.1927 6 6 2.9599 4.0253 0.0005 7 6 2.6306 3.4087 1.1929 8 6 2.1645 2.1071 1.1925 9 6 1.8055 1.4348 2.4925 10 1 2.1744 0.4092 2.4852 11 6 2.4440 2.1981 3.6547 12 7 1.9990 1.6171 4.9237 13 6 2.4358 2.1314 6.0903 14 8 3.1987 3.0777 6.0896 15 6 1.9871 1.5447 7.3710 16 6 2.4291 2.0734 8.5899 17 6 1.9836 1.4847 9.7601 18 6 1.1151 0.4101 9.6894 19 7 0.7114 -0.0639 8.5263 20 6 1.1115 0.4586 7.3855 21 7 0.3494 1.4289 2.6535 22 6 -0.3484 2.6065 2.6162 23 1 0.1623 3.5297 2.3851 24 6 -1.7121 2.6137 2.8752 25 7 -2.3344 1.4887 3.1572 26 14 -2.6639 4.2202 2.8251 27 1 -3.1758 4.4496 1.4500 28 1 -3.8050 4.1494 3.7728 29 1 -1.7675 5.3390 3.2125 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.2486 1.5048 -2.1253 36 1 3.0789 3.8226 -2.1246 37 1 3.3245 5.0418 0.0009 38 1 2.7384 3.9433 2.1251 39 1 2.1446 3.2453 3.6097 40 1 3.5293 2.1272 3.5833 41 1 1.3899 0.8622 4.9244 42 1 3.1039 2.9163 8.6160 43 1 2.3068 1.8629 10.7186 44 1 0.7622 -0.0486 10.6012 45 1 0.7586 0.0429 6.4532 46 1 -0.1204 0.5907 2.7865 47 1 -3.2872 1.4938 3.3385 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501015395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:17 Heat of formation + Delta-G solvation = 22.805122 kcal Electronic energy + Delta-G solvation = -29495.023922 eV Core-core repulsion = 25642.245055 eV Total energy + Delta-G solvation = -3852.778867 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.58991 -40.77281 -39.83865 -37.44262 -35.35663 -34.72128 -33.74631 -33.47507 -32.28358 -31.30033 -30.15410 -28.62315 -26.42596 -25.28621 -24.55626 -24.40703 -23.94258 -21.96362 -21.52622 -20.88861 -19.30223 -19.04528 -17.87862 -17.45475 -17.18412 -17.07477 -16.46814 -16.25081 -16.15083 -15.78864 -15.70852 -15.40103 -14.92955 -14.71942 -14.53705 -14.45954 -14.17526 -14.07429 -13.84845 -13.68086 -13.57734 -13.16997 -13.09664 -12.88570 -12.73488 -12.53145 -12.48061 -12.19154 -12.00114 -11.76393 -11.43488 -11.29924 -11.17659 -10.96317 -10.86221 -10.45964 -10.28494 -9.92300 -9.55768 -9.36529 -8.90737 -7.88246 -5.13191 -0.35246 0.21145 0.63724 0.64951 1.41729 1.46002 1.49512 1.84109 2.20865 2.57406 2.86794 3.00157 3.33677 3.46073 3.75493 3.83973 3.91172 3.93905 4.03184 4.04976 4.11142 4.14095 4.22541 4.38637 4.38883 4.46544 4.51517 4.67168 4.73501 4.78101 4.81363 4.84131 4.87126 5.02108 5.10355 5.13382 5.19419 5.25775 5.31536 5.40303 5.47988 5.60358 5.64885 5.73730 5.77869 5.86810 5.99845 6.28994 6.33284 6.54290 6.86178 7.17039 7.43875 8.06842 8.36604 9.32684 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010148 B = 0.003895 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.521914 B = 7186.811702 C = 8213.265314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.070 4.070 3 C -0.076 4.076 4 C -0.130 4.130 5 C -0.129 4.129 6 C -0.137 4.137 7 C -0.130 4.130 8 C -0.080 4.080 9 C 0.202 3.798 10 H 0.094 0.906 11 C 0.116 3.884 12 N -0.691 5.691 13 C 0.556 3.444 14 O -0.584 6.584 15 C -0.199 4.199 16 C -0.031 4.031 17 C -0.167 4.167 18 C 0.116 3.884 19 N -0.510 5.510 20 C 0.132 3.868 21 N -0.701 5.701 22 C -0.204 4.204 23 H 0.061 0.939 24 C -0.052 4.052 25 N -0.950 5.950 26 Si 0.935 3.065 27 H -0.295 1.295 28 H -0.300 1.300 29 H -0.285 1.285 30 H 0.032 0.968 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.131 0.869 38 H 0.112 0.888 39 H 0.047 0.953 40 H 0.067 0.933 41 H 0.407 0.593 42 H 0.148 0.852 43 H 0.181 0.819 44 H 0.196 0.804 45 H 0.160 0.840 46 H 0.383 0.617 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.619 -4.006 3.727 12.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.107 4.107 3 C -0.077 4.077 4 C -0.148 4.148 5 C -0.147 4.147 6 C -0.155 4.155 7 C -0.148 4.148 8 C -0.083 4.083 9 C 0.092 3.908 10 H 0.112 0.888 11 C -0.010 4.010 12 N -0.340 5.340 13 C 0.343 3.657 14 O -0.466 6.466 15 C -0.204 4.204 16 C -0.058 4.058 17 C -0.186 4.186 18 C -0.040 4.040 19 N -0.219 5.219 20 C -0.026 4.026 21 N -0.341 5.341 22 C -0.336 4.336 23 H 0.079 0.921 24 C -0.246 4.246 25 N -0.600 5.600 26 Si 0.768 3.232 27 H -0.223 1.223 28 H -0.227 1.227 29 H -0.211 1.211 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.153 0.847 36 H 0.158 0.842 37 H 0.149 0.851 38 H 0.130 0.870 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.244 0.756 42 H 0.165 0.835 43 H 0.199 0.801 44 H 0.213 0.787 45 H 0.177 0.823 46 H 0.218 0.782 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 11.499 -3.906 3.688 12.692 hybrid contribution -0.948 1.468 -0.207 1.760 sum 10.550 -2.437 3.482 11.374 Atomic orbital electron populations 1.21960 0.95251 1.01191 1.03241 1.20436 0.95611 0.91943 1.02687 1.19900 0.98014 0.97171 0.92582 1.21234 1.00229 0.95705 0.97631 1.21320 1.00135 0.94860 0.98384 1.21301 1.01217 1.00411 0.92613 1.21256 0.99977 0.95069 0.98544 1.20200 0.97663 0.94660 0.95761 1.19485 0.84747 0.97645 0.88899 0.88771 1.21876 0.97745 0.97823 0.83525 1.45649 1.47874 1.35349 1.05131 1.18367 0.80340 0.82621 0.84387 1.90698 1.38216 1.29534 1.88175 1.20990 1.03970 1.00899 0.94588 1.21951 0.95319 0.97472 0.91021 1.22532 0.98837 0.97323 0.99928 1.23697 0.91508 0.92392 0.96428 1.67765 1.24192 1.30839 0.99056 1.23075 0.90987 0.91024 0.97486 1.42404 1.00399 1.06068 1.85204 1.19079 0.90211 0.87933 1.36411 0.92130 1.25020 0.97753 0.97808 1.03988 1.69700 1.08820 1.25142 1.56374 0.85716 0.78811 0.82063 0.76605 1.22276 1.22735 1.21080 0.94872 0.92794 0.90469 0.90334 0.90836 0.84719 0.84154 0.85062 0.86984 0.93510 0.91463 0.75559 0.83471 0.80149 0.78702 0.82302 0.78167 0.94432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.33 9.88 71.98 0.71 -4.62 16 2 C -0.07 -1.96 5.57 29.85 0.17 -1.79 16 3 C -0.08 -2.39 5.13 -19.87 -0.10 -2.49 16 4 C -0.13 -3.66 9.68 22.27 0.22 -3.45 16 5 C -0.13 -3.47 10.05 22.27 0.22 -3.25 16 6 C -0.14 -4.05 10.05 22.27 0.22 -3.83 16 7 C -0.13 -4.39 8.53 22.27 0.19 -4.20 16 8 C -0.08 -2.74 4.61 -19.87 -0.09 -2.83 16 9 C 0.20 6.86 2.45 44.24 0.11 6.97 16 10 H 0.09 2.79 6.56 -2.39 -0.02 2.77 16 11 C 0.12 4.07 4.10 86.38 0.35 4.42 16 12 N -0.69 -23.50 5.34 -466.01 -2.49 -25.99 16 13 C 0.56 19.74 7.78 86.79 0.68 20.42 16 14 O -0.58 -23.98 16.42 -3.86 -0.06 -24.04 16 15 C -0.20 -5.98 5.89 -19.99 -0.12 -6.10 16 16 C -0.03 -0.77 9.72 22.73 0.22 -0.55 16 17 C -0.17 -2.95 10.10 22.33 0.23 -2.72 16 18 C 0.12 2.25 11.17 84.71 0.95 3.20 16 19 N -0.51 -13.71 10.35 -194.75 -2.01 -15.73 16 20 C 0.13 3.81 10.71 85.02 0.91 4.72 16 21 N -0.70 -28.93 2.75 -326.51 -0.90 -29.83 16 22 C -0.20 -10.07 8.66 84.03 0.73 -9.34 16 23 H 0.06 3.12 6.93 -2.91 -0.02 3.10 16 24 C -0.05 -2.79 5.50 84.86 0.47 -2.32 16 25 N -0.95 -52.60 13.06 21.65 0.28 -52.31 16 26 Si 0.94 45.72 29.55 68.60 2.03 47.75 16 27 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 28 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 29 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 30 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 3.18 4.76 -2.39 -0.01 3.16 16 33 H 0.08 1.83 8.05 -2.39 -0.02 1.81 16 34 H 0.07 1.94 6.37 -2.38 -0.02 1.93 16 35 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 36 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 37 H 0.13 3.26 8.06 -2.91 -0.02 3.23 16 38 H 0.11 3.91 5.84 -2.91 -0.02 3.89 16 39 H 0.05 1.91 6.04 -2.38 -0.01 1.89 16 40 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.41 13.07 6.20 -92.71 -0.58 12.50 16 42 H 0.15 3.49 7.74 -2.91 -0.02 3.47 16 43 H 0.18 1.67 8.06 -2.91 -0.02 1.64 16 44 H 0.20 2.19 8.06 -2.91 -0.02 2.17 16 45 H 0.16 4.46 6.42 -2.91 -0.02 4.44 16 46 H 0.38 16.78 7.21 -92.71 -0.67 16.11 16 47 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -65.73 383.52 2.68 -63.05 By element: Atomic # 1 Polarization: 45.06 SS G_CDS: -0.22 Total: 44.84 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 6.05 Total: -7.74 kcal Atomic # 7 Polarization: -118.74 SS G_CDS: -5.12 Total: -123.86 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.06 Total: -24.04 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -65.73 2.68 -63.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501015395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.858 kcal (2) G-P(sol) polarization free energy of solvation -65.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds