Wall clock time and date at job start Tue Mar 31 2020 22:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50701 * 109.46970 * 2 1 4 4 C 1.38618 * 120.75595 * 269.97460 * 3 2 1 5 5 C 1.38559 * 119.35365 * 180.02562 * 4 3 2 6 6 N 1.31529 * 120.90045 * 359.74721 * 5 4 3 7 7 C 1.32719 * 121.64038 * 0.52729 * 6 5 4 8 8 C 1.48172 * 119.72003 * 179.75262 * 7 6 5 9 9 O 1.21510 * 119.99906 * 179.72352 * 8 7 6 10 10 N 1.34777 * 119.99804 * 359.72109 * 8 7 6 11 11 C 1.46498 * 119.99536 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47215 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.46932 * 64.99997 * 12 11 10 14 14 N 1.46499 * 109.46606 * 304.99884 * 12 11 10 15 15 C 1.36933 * 120.00403 * 304.55183 * 14 12 11 16 16 H 1.08002 * 119.99477 * 4.79425 * 15 14 12 17 17 C 1.38806 * 120.00139 * 184.79522 * 15 14 12 18 18 N 1.31622 * 120.00239 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00101 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.46960 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47334 * 119.99916 * 19 17 15 22 22 H 1.48504 * 109.47114 * 240.00080 * 19 17 15 23 23 C 1.50699 * 109.47253 * 184.99854 * 12 11 10 24 24 C 1.38238 * 119.99879 * 153.20892 * 23 12 11 25 25 C 1.38232 * 119.99886 * 179.97438 * 24 23 12 26 26 C 1.38232 * 120.00257 * 359.97438 * 25 24 23 27 27 C 1.38239 * 119.99950 * 359.97438 * 26 25 24 28 28 C 1.38232 * 120.00200 * 333.23245 * 23 12 11 29 29 C 1.38582 * 120.75351 * 90.00404 * 3 2 1 30 30 H 1.08992 * 109.47102 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46663 * 299.99945 * 1 2 3 32 32 H 1.08994 * 109.46845 * 59.99764 * 1 2 3 33 33 H 1.09003 * 109.46663 * 240.00055 * 2 1 3 34 34 H 1.08994 * 109.46845 * 120.00236 * 2 1 3 35 35 H 1.08007 * 120.32856 * 0.02562 * 4 3 2 36 36 H 1.08004 * 119.55243 * 179.97438 * 5 4 3 37 37 H 0.96997 * 120.00314 * 0.02562 * 10 8 7 38 38 H 1.09001 * 109.47508 * 59.99909 * 11 10 8 39 39 H 1.09001 * 109.47664 * 299.99843 * 11 10 8 40 40 H 0.97008 * 119.99837 * 124.55854 * 14 12 11 41 41 H 0.97001 * 120.00438 * 179.97438 * 18 17 15 42 42 H 1.07999 * 120.00148 * 359.97438 * 24 23 12 43 43 H 1.08000 * 119.99883 * 179.97438 * 25 24 23 44 44 H 1.08003 * 120.00307 * 179.72529 * 26 25 24 45 45 H 1.07999 * 119.99787 * 179.97438 * 27 26 25 46 46 H 1.08004 * 119.99875 * 359.97438 * 28 23 12 47 47 H 1.08009 * 120.47384 * 359.95205 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2692 2.0890 -1.1912 5 6 2.7314 3.3948 -1.1573 6 7 2.9425 4.0071 -0.0125 7 6 2.7335 3.4015 1.1498 8 6 2.9906 4.1299 2.4143 9 8 2.7961 3.5821 3.4813 10 7 3.4402 5.4000 2.3808 11 6 3.6949 6.1199 3.6310 12 6 4.1939 7.5312 3.3144 13 1 3.4042 8.0921 2.8144 14 7 5.3651 7.4498 2.4381 15 6 6.4534 6.7099 2.8166 16 1 6.4192 6.1243 3.7234 17 6 7.6004 6.7126 2.0349 18 7 7.6422 7.4267 0.9300 19 14 9.0847 5.7027 2.5509 20 1 8.7847 4.9955 3.8217 21 1 9.3993 4.7090 1.4932 22 1 10.2504 6.6013 2.7484 23 6 4.5722 8.2295 4.5951 24 6 5.5241 9.2318 4.5807 25 6 5.8708 9.8727 5.7554 26 6 5.2653 9.5116 6.9444 27 6 4.3126 8.5100 6.9587 28 6 3.9678 7.8674 5.7844 29 6 2.2687 2.0889 1.1909 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.0951 1.5966 -2.1366 36 1 2.9173 3.9183 -2.0835 37 1 3.5951 5.8374 1.5291 38 1 4.4507 5.5882 4.2091 39 1 2.7728 6.1822 4.2089 40 1 5.3697 7.9202 1.5897 41 1 8.4438 7.4289 0.3839 42 1 5.9969 9.5142 3.6517 43 1 6.6148 10.6555 5.7442 44 1 5.5394 10.0093 7.8630 45 1 3.8399 8.2276 7.8878 46 1 3.2241 7.0843 5.7956 47 1 2.0947 1.5990 2.1377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567659900.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:20 Heat of formation + Delta-G solvation = 14.101913 kcal Electronic energy + Delta-G solvation = -28585.690652 eV Core-core repulsion = 24732.534386 eV Total energy + Delta-G solvation = -3853.156267 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.67680 -40.51035 -39.79551 -37.44627 -36.02719 -35.10216 -33.65328 -32.40999 -31.78790 -31.28337 -31.07667 -28.81454 -26.50801 -25.65625 -24.99216 -23.80701 -23.18767 -22.79117 -21.41761 -21.05513 -19.34363 -18.70061 -17.94517 -17.60708 -17.01117 -16.87032 -16.49779 -16.37236 -16.00569 -15.88181 -15.68871 -15.42135 -15.05056 -14.82419 -14.76889 -14.50778 -14.38895 -14.12362 -13.92369 -13.58053 -13.45613 -13.29501 -13.05577 -12.97815 -12.90558 -12.53956 -12.36927 -12.09327 -11.92898 -11.87997 -11.82700 -11.53924 -11.35437 -10.99851 -10.59887 -10.47841 -10.28608 -9.91986 -9.64961 -9.48245 -9.01042 -7.92613 -5.20023 -0.34707 0.22637 0.61043 0.68819 1.39104 1.42444 1.49135 1.71857 2.17427 2.53944 2.86569 3.03922 3.19666 3.40520 3.62381 3.76128 3.85624 4.01081 4.02334 4.04556 4.19060 4.26643 4.28480 4.33984 4.39215 4.44796 4.48155 4.52824 4.62544 4.65092 4.77481 4.84436 4.92175 4.94961 5.00138 5.07215 5.09827 5.25703 5.33198 5.35704 5.37320 5.45949 5.56396 5.65804 5.72264 5.77596 5.96844 6.27072 6.31029 6.48262 6.86095 7.17387 7.38070 8.03118 8.31415 9.29434 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011103 B = 0.003238 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.305102 B = 8646.186327 C =10192.749026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.047 4.047 4 C -0.137 4.137 5 C 0.091 3.909 6 N -0.485 5.485 7 C 0.059 3.941 8 C 0.558 3.442 9 O -0.579 6.579 10 N -0.680 5.680 11 C 0.123 3.877 12 C 0.200 3.800 13 H 0.093 0.907 14 N -0.714 5.714 15 C -0.204 4.204 16 H 0.057 0.943 17 C -0.057 4.057 18 N -0.956 5.956 19 Si 0.943 3.057 20 H -0.281 1.281 21 H -0.297 1.297 22 H -0.292 1.292 23 C -0.096 4.096 24 C -0.099 4.099 25 C -0.137 4.137 26 C -0.130 4.130 27 C -0.129 4.129 28 C -0.133 4.133 29 C -0.122 4.122 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.180 0.820 36 H 0.188 0.812 37 H 0.414 0.586 38 H 0.041 0.959 39 H 0.078 0.922 40 H 0.380 0.620 41 H 0.248 0.752 42 H 0.103 0.897 43 H 0.128 0.872 44 H 0.144 0.856 45 H 0.144 0.856 46 H 0.129 0.871 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.175 -8.110 -1.251 17.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.055 4.055 4 C -0.156 4.156 5 C -0.068 4.068 6 N -0.197 5.197 7 C -0.078 4.078 8 C 0.343 3.657 9 O -0.460 6.460 10 N -0.328 5.328 11 C -0.003 4.003 12 C 0.090 3.910 13 H 0.111 0.889 14 N -0.352 5.352 15 C -0.336 4.336 16 H 0.075 0.925 17 C -0.250 4.250 18 N -0.607 5.607 19 Si 0.774 3.226 20 H -0.206 1.206 21 H -0.225 1.225 22 H -0.220 1.220 23 C -0.098 4.098 24 C -0.117 4.117 25 C -0.155 4.155 26 C -0.148 4.148 27 C -0.146 4.146 28 C -0.152 4.152 29 C -0.144 4.144 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.197 0.803 36 H 0.205 0.795 37 H 0.251 0.749 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.213 0.787 41 H 0.057 0.943 42 H 0.121 0.879 43 H 0.146 0.854 44 H 0.161 0.839 45 H 0.162 0.838 46 H 0.147 0.853 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.870 -7.681 -0.357 16.740 hybrid contribution 1.308 -0.737 -0.437 1.564 sum -13.561 -8.418 -0.794 15.981 Atomic orbital electron populations 1.21746 0.93382 1.03080 1.02071 1.20677 0.97065 0.89474 1.04815 1.20699 0.94936 0.98031 0.91825 1.22666 0.97608 0.95254 1.00086 1.23394 0.94324 0.93323 0.95807 1.67539 1.14217 1.39233 0.98678 1.20993 1.01411 0.93548 0.91830 1.18321 0.77377 0.81954 0.88023 1.90688 1.55511 1.68482 1.31348 1.45646 1.63133 1.12934 1.11104 1.21772 0.99434 0.93565 0.85518 1.19490 0.89821 0.92169 0.89487 0.88911 1.42364 1.13634 1.58585 1.20653 1.19072 0.91563 1.18356 1.04624 0.92537 1.25140 0.99826 1.01900 0.98140 1.69751 1.28628 1.46100 1.16190 0.85527 0.81536 0.78408 0.77091 1.20585 1.22510 1.21954 1.20615 0.96990 0.96291 0.95951 1.20976 0.96453 0.95867 0.98417 1.21349 1.00571 1.00700 0.92928 1.21376 0.97090 0.98211 0.98123 1.21379 0.98353 0.96579 0.98338 1.21304 1.00944 1.00484 0.92422 1.22072 0.97930 0.93705 1.00655 0.90306 0.93667 0.91885 0.88016 0.90287 0.80308 0.79544 0.74905 0.94057 0.90373 0.78682 0.94262 0.87922 0.85442 0.83856 0.83822 0.85309 0.84216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.90 71.99 0.71 -0.94 16 2 C -0.08 -1.08 6.11 29.85 0.18 -0.90 16 3 C -0.05 -0.94 5.17 -19.69 -0.10 -1.04 16 4 C -0.14 -2.38 9.82 22.44 0.22 -2.16 16 5 C 0.09 2.09 11.18 84.81 0.95 3.04 16 6 N -0.48 -15.49 9.54 -184.90 -1.76 -17.26 16 7 C 0.06 2.01 6.75 41.91 0.28 2.29 16 8 C 0.56 22.05 7.81 86.88 0.68 22.72 16 9 O -0.58 -25.13 16.32 -3.75 -0.06 -25.19 16 10 N -0.68 -26.43 5.38 -465.65 -2.50 -28.93 16 11 C 0.12 4.67 3.87 86.38 0.33 5.00 16 12 C 0.20 7.59 3.26 44.25 0.14 7.74 16 13 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 14 N -0.71 -33.07 3.82 -326.51 -1.25 -34.32 16 15 C -0.20 -10.87 8.63 84.03 0.72 -10.14 16 16 H 0.06 3.15 6.91 -2.91 -0.02 3.13 16 17 C -0.06 -3.21 5.50 84.86 0.47 -2.75 16 18 N -0.96 -56.18 13.06 21.65 0.28 -55.90 16 19 Si 0.94 47.30 29.55 68.60 2.03 49.32 16 20 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 21 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 22 H -0.29 -14.57 7.11 99.48 0.71 -13.87 16 23 C -0.10 -3.54 5.19 -19.87 -0.10 -3.64 16 24 C -0.10 -3.80 9.00 22.27 0.20 -3.60 16 25 C -0.14 -4.47 10.05 22.27 0.22 -4.25 16 26 C -0.13 -3.62 10.05 22.27 0.22 -3.39 16 27 C -0.13 -3.58 10.05 22.27 0.22 -3.35 16 28 C -0.13 -4.25 9.14 22.27 0.20 -4.05 16 29 C -0.12 -3.42 9.34 22.61 0.21 -3.20 16 30 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.10 0.88 8.10 -2.39 -0.02 0.86 16 34 H 0.08 1.05 8.10 -2.39 -0.02 1.03 16 35 H 0.18 1.58 8.06 -2.91 -0.02 1.55 16 36 H 0.19 3.13 8.06 -2.91 -0.02 3.11 16 37 H 0.41 16.29 7.47 -92.71 -0.69 15.59 16 38 H 0.04 1.82 7.15 -2.39 -0.02 1.81 16 39 H 0.08 2.65 6.86 -2.39 -0.02 2.63 16 40 H 0.38 18.84 8.04 -92.70 -0.75 18.09 16 41 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 42 H 0.10 4.48 7.50 -2.91 -0.02 4.46 16 43 H 0.13 3.65 8.06 -2.91 -0.02 3.62 16 44 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 45 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 46 H 0.13 3.74 6.22 -2.91 -0.02 3.72 16 47 H 0.14 3.90 7.64 -2.91 -0.02 3.88 16 Total: -1.00 -70.22 394.95 2.07 -68.14 By element: Atomic # 1 Polarization: 47.18 SS G_CDS: -0.44 Total: 46.74 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 5.78 Total: -2.61 kcal Atomic # 7 Polarization: -131.18 SS G_CDS: -5.23 Total: -136.41 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.06 Total: -25.19 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.32 kcal Total: -70.22 2.07 -68.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567659900.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.244 kcal (2) G-P(sol) polarization free energy of solvation -70.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds