Wall clock time and date at job start Tue Mar 31 2020 22:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50702 * 109.47731 * 2 1 4 4 C 1.38619 * 120.75363 * 269.98260 * 3 2 1 5 5 C 1.38562 * 119.35143 * 180.02562 * 4 3 2 6 6 N 1.31522 * 120.90192 * 359.73995 * 5 4 3 7 7 C 1.32718 * 121.63980 * 0.52630 * 6 5 4 8 8 C 1.48173 * 119.72070 * 179.75831 * 7 6 5 9 9 O 1.21520 * 119.99985 * 179.72811 * 8 7 6 10 10 N 1.34776 * 120.00101 * 359.71664 * 8 7 6 11 11 C 1.46498 * 119.99914 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46967 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.47570 * 295.00289 * 12 11 10 14 14 N 1.46507 * 109.47045 * 55.00693 * 12 11 10 15 15 C 1.36935 * 119.99742 * 205.00075 * 14 12 11 16 16 H 1.07999 * 120.00083 * 359.97438 * 15 14 12 17 17 C 1.38817 * 119.99986 * 179.97438 * 15 14 12 18 18 N 1.31617 * 119.99464 * 0.27719 * 17 15 14 19 19 Si 1.86800 * 119.99902 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47035 * 60.00419 * 19 17 15 21 21 H 1.48503 * 109.46845 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47237 * 300.00175 * 19 17 15 23 23 C 1.50706 * 109.46984 * 175.00042 * 12 11 10 24 24 C 1.38236 * 120.00007 * 279.72707 * 23 12 11 25 25 C 1.38236 * 119.99909 * 179.79031 * 24 23 12 26 26 C 1.38235 * 119.99640 * 0.43835 * 25 24 23 27 27 C 1.38238 * 120.00463 * 359.81507 * 26 25 24 28 28 C 1.38232 * 119.99750 * 359.97438 * 27 26 25 29 29 C 1.38583 * 120.75383 * 89.99773 * 3 2 1 30 30 H 1.09001 * 109.47088 * 300.00366 * 1 2 3 31 31 H 1.09012 * 109.47025 * 59.99810 * 1 2 3 32 32 H 1.08996 * 109.47513 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47088 * 239.99634 * 2 1 3 34 34 H 1.08996 * 109.47063 * 120.00570 * 2 1 3 35 35 H 1.07996 * 120.32981 * 359.97438 * 4 3 2 36 36 H 1.08001 * 119.55088 * 179.97438 * 5 4 3 37 37 H 0.96998 * 120.00029 * 0.02562 * 10 8 7 38 38 H 1.08995 * 109.47278 * 60.00770 * 11 10 8 39 39 H 1.08999 * 109.47319 * 300.00694 * 11 10 8 40 40 H 0.96999 * 120.00180 * 24.99002 * 14 12 11 41 41 H 0.97001 * 120.00638 * 359.71685 * 18 17 15 42 42 H 1.08004 * 119.99921 * 359.97438 * 24 23 12 43 43 H 1.07994 * 119.99924 * 180.27852 * 25 24 23 44 44 H 1.08000 * 119.99832 * 179.83172 * 26 25 24 45 45 H 1.07999 * 120.00414 * 179.97438 * 27 26 25 46 46 H 1.07994 * 120.00128 * 179.97438 * 28 27 26 47 47 H 1.07997 * 120.47366 * 359.95769 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2691 2.0889 -1.1913 5 6 2.7315 3.3947 -1.1574 6 7 2.9428 4.0069 -0.0127 7 6 2.7336 3.4014 1.1497 8 6 2.9907 4.1298 2.4142 9 8 2.7962 3.5820 3.4813 10 7 3.4405 5.3999 2.3808 11 6 3.6952 6.1198 3.6310 12 6 4.1944 7.5310 3.3142 13 1 5.1610 7.4708 2.8140 14 7 3.2322 8.2042 2.4382 15 6 3.6466 9.2196 1.6183 16 1 4.6827 9.5245 1.6177 17 6 2.7350 9.8571 0.7878 18 7 1.4714 9.4891 0.7926 19 14 3.3003 11.2428 -0.3301 20 1 4.3396 10.7349 -1.2612 21 1 2.1440 11.7524 -1.1101 22 1 3.8667 12.3423 0.4919 23 6 4.3393 8.3119 4.5950 24 6 3.2274 8.8811 5.1871 25 6 3.3597 9.5936 6.3642 26 6 4.6053 9.7446 6.9444 27 6 5.7180 9.1798 6.3496 28 6 5.5850 8.4636 5.1748 29 6 2.2687 2.0889 1.1909 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8899 35 1 2.0957 1.5964 -2.1366 36 1 2.9174 3.9181 -2.0836 37 1 3.5956 5.8372 1.5290 38 1 4.4510 5.5881 4.2090 39 1 2.7731 6.1821 4.2088 40 1 2.3016 7.9305 2.4388 41 1 1.1778 8.7698 1.3733 42 1 2.2548 8.7665 4.7315 43 1 2.4904 10.0345 6.8291 44 1 4.7091 10.3036 7.8626 45 1 6.6912 9.2982 6.8026 46 1 6.4543 8.0227 4.7098 47 1 2.0947 1.5990 2.1376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567659901.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:24 Heat of formation + Delta-G solvation = 28.632786 kcal Electronic energy + Delta-G solvation = -28330.963792 eV Core-core repulsion = 24478.437631 eV Total energy + Delta-G solvation = -3852.526161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.65598 -39.20902 -38.59645 -36.01781 -35.24072 -33.74405 -32.15677 -31.40606 -30.53966 -30.44352 -29.37187 -27.53009 -24.99563 -24.33367 -23.36464 -22.77112 -22.13686 -21.91205 -20.18604 -19.93477 -17.73394 -17.36059 -16.91232 -16.44761 -16.09256 -15.47295 -15.34112 -15.14875 -14.74856 -14.61114 -14.35876 -14.17651 -13.95008 -13.74357 -13.62246 -13.39922 -13.18797 -12.90766 -12.81710 -12.63145 -12.33984 -12.13641 -11.91316 -11.78356 -11.30702 -11.09193 -10.95582 -10.78235 -10.65248 -10.37094 -10.14921 -10.00506 -9.72723 -9.48889 -9.28841 -9.25102 -9.04229 -8.71320 -8.44349 -8.21848 -7.15003 -6.12857 -3.15871 0.62745 1.10465 1.82690 1.88939 2.85561 3.33586 3.51091 3.54259 3.71247 3.88083 4.18385 4.26756 4.38195 4.55144 4.63428 4.84307 4.91614 4.99903 5.01792 5.17917 5.19468 5.31684 5.37135 5.38921 5.46839 5.51033 5.54678 5.56369 5.58032 5.67401 5.72507 5.80130 5.81386 5.89816 5.99686 6.05069 6.10644 6.16798 6.36322 6.44791 6.50063 6.58461 6.72750 6.90097 6.97472 7.23902 7.48721 7.63702 7.77861 7.95593 8.43053 8.71257 9.12774 10.00057 10.12606 11.34223 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009744 B = 0.003199 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.935404 B = 8751.604230 C =10910.761078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 C -0.050 4.050 4 C -0.154 4.154 5 C 0.104 3.896 6 N -0.453 5.453 7 C 0.087 3.913 8 C 0.565 3.435 9 O -0.547 6.547 10 N -0.691 5.691 11 C 0.117 3.883 12 C 0.204 3.796 13 H 0.067 0.933 14 N -0.723 5.723 15 C -0.333 4.333 16 H 0.065 0.935 17 C -0.036 4.036 18 N -0.939 5.939 19 Si 1.077 2.923 20 H -0.295 1.295 21 H -0.286 1.286 22 H -0.296 1.296 23 C -0.080 4.080 24 C -0.084 4.084 25 C -0.127 4.127 26 C -0.134 4.134 27 C -0.129 4.129 28 C -0.119 4.119 29 C -0.114 4.114 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.138 0.862 36 H 0.163 0.837 37 H 0.422 0.578 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.370 0.630 41 H 0.255 0.745 42 H 0.119 0.881 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.071 -15.333 0.983 15.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.122 4.122 3 C -0.058 4.058 4 C -0.174 4.174 5 C -0.055 4.055 6 N -0.164 5.164 7 C -0.051 4.051 8 C 0.350 3.650 9 O -0.425 6.425 10 N -0.343 5.343 11 C -0.007 4.007 12 C 0.093 3.907 13 H 0.085 0.915 14 N -0.365 5.365 15 C -0.463 4.463 16 H 0.083 0.917 17 C -0.235 4.235 18 N -0.583 5.583 19 Si 0.908 3.092 20 H -0.222 1.222 21 H -0.211 1.211 22 H -0.223 1.223 23 C -0.084 4.084 24 C -0.103 4.103 25 C -0.145 4.145 26 C -0.152 4.152 27 C -0.147 4.147 28 C -0.138 4.138 29 C -0.135 4.135 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.155 0.845 36 H 0.181 0.819 37 H 0.260 0.740 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.204 0.796 41 H 0.066 0.934 42 H 0.137 0.863 43 H 0.132 0.868 44 H 0.130 0.870 45 H 0.131 0.869 46 H 0.133 0.867 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.951 -13.619 0.582 13.947 hybrid contribution 0.044 -1.516 0.744 1.690 sum 2.995 -15.136 1.326 15.486 Atomic orbital electron populations 1.21760 0.94090 1.02110 1.02652 1.20577 0.96646 0.91471 1.03507 1.20313 0.96004 0.96771 0.92682 1.22246 1.00112 0.96320 0.98740 1.22848 0.94695 0.91876 0.96118 1.67646 1.13564 1.37244 0.97959 1.21214 0.99047 0.92396 0.92423 1.17888 0.77828 0.82027 0.87288 1.90750 1.53436 1.68277 1.30043 1.45860 1.64325 1.12586 1.11482 1.21683 1.01153 0.92215 0.85696 1.19402 0.95031 0.88048 0.88227 0.91506 1.42439 1.06849 1.41253 1.45995 1.19967 0.95989 1.12208 1.18174 0.91690 1.25694 0.94225 1.03042 1.00513 1.70890 1.15235 1.30950 1.41238 0.83281 0.74810 0.75306 0.75785 1.22195 1.21113 1.22336 1.20954 0.92865 0.98228 0.96378 1.20953 0.99141 0.96172 0.94015 1.21098 0.97173 0.99761 0.96472 1.20985 0.93072 1.01050 1.00074 1.20990 0.98088 0.99161 0.96442 1.21006 0.97016 0.99846 0.95955 1.21975 0.97706 0.94384 0.99441 0.92208 0.92343 0.91965 0.90402 0.90340 0.84451 0.81937 0.73976 0.91143 0.91450 0.79633 0.93400 0.86289 0.86819 0.86993 0.86897 0.86705 0.83689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 37.15 0.37 -0.69 16 2 C -0.08 -0.63 6.11 -27.89 -0.17 -0.80 16 3 C -0.05 -0.52 5.17 -104.35 -0.54 -1.06 16 4 C -0.15 -1.53 9.82 -39.32 -0.39 -1.91 16 5 C 0.10 1.27 11.18 -17.56 -0.20 1.07 16 6 N -0.45 -7.10 9.54 -9.80 -0.09 -7.20 16 7 C 0.09 1.39 6.75 -83.01 -0.56 0.83 16 8 C 0.57 10.16 7.81 -12.18 -0.10 10.06 16 9 O -0.55 -10.73 16.32 5.35 0.09 -10.64 16 10 N -0.69 -12.46 5.38 -61.15 -0.33 -12.79 16 11 C 0.12 2.07 5.21 -4.04 -0.02 2.05 16 12 C 0.20 3.93 2.65 -69.08 -0.18 3.75 16 13 H 0.07 1.30 7.94 -51.93 -0.41 0.89 16 14 N -0.72 -16.83 3.79 -54.54 -0.21 -17.04 16 15 C -0.33 -8.86 9.92 -15.06 -0.15 -9.01 16 16 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 17 C -0.04 -1.02 5.50 -17.43 -0.10 -1.12 16 18 N -0.94 -28.07 13.70 55.49 0.76 -27.31 16 19 Si 1.08 25.52 29.92 -169.99 -5.09 20.44 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 23 C -0.08 -1.49 4.92 -104.62 -0.52 -2.01 16 24 C -0.08 -1.59 9.33 -39.58 -0.37 -1.96 16 25 C -0.13 -2.10 10.05 -39.58 -0.40 -2.49 16 26 C -0.13 -2.00 10.05 -39.58 -0.40 -2.40 16 27 C -0.13 -1.93 10.05 -39.58 -0.40 -2.32 16 28 C -0.12 -1.97 9.67 -39.58 -0.38 -2.35 16 29 C -0.11 -1.50 9.34 -39.06 -0.36 -1.87 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.46 8.10 -51.93 -0.42 0.04 16 34 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 35 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.42 8.06 7.47 -40.82 -0.30 7.76 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.37 9.08 6.63 -40.82 -0.27 8.81 16 41 H 0.25 7.55 6.77 -40.82 -0.28 7.27 16 42 H 0.12 2.38 7.71 -52.48 -0.40 1.98 16 43 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 44 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 45 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 46 H 0.11 1.67 8.04 -52.49 -0.42 1.25 16 47 H 0.15 1.83 7.64 -52.49 -0.40 1.43 16 LS Contribution 400.61 15.07 6.04 6.04 Total: -1.00 -32.28 400.61 -10.45 -42.73 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: -6.77 Total: 18.02 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -4.85 Total: -12.25 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: 0.13 Total: -64.33 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -5.09 Total: 20.44 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.28 -10.45 -42.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567659901.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.361 kcal (2) G-P(sol) polarization free energy of solvation -32.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds