Wall clock time and date at job start Tue Mar 31 2020 22:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50702 * 109.47731 * 2 1 4 4 C 1.38619 * 120.75363 * 269.98260 * 3 2 1 5 5 C 1.38562 * 119.35143 * 180.02562 * 4 3 2 6 6 N 1.31522 * 120.90192 * 359.73995 * 5 4 3 7 7 C 1.32718 * 121.63980 * 0.52630 * 6 5 4 8 8 C 1.48173 * 119.72070 * 179.75831 * 7 6 5 9 9 O 1.21520 * 119.99985 * 179.72811 * 8 7 6 10 10 N 1.34776 * 120.00101 * 359.71664 * 8 7 6 11 11 C 1.46498 * 119.99914 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46967 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.47570 * 295.00289 * 12 11 10 14 14 N 1.46507 * 109.47045 * 55.00693 * 12 11 10 15 15 C 1.36935 * 119.99742 * 205.00075 * 14 12 11 16 16 H 1.07999 * 120.00083 * 359.97438 * 15 14 12 17 17 C 1.38817 * 119.99986 * 179.97438 * 15 14 12 18 18 N 1.31617 * 119.99464 * 0.27719 * 17 15 14 19 19 Si 1.86800 * 119.99902 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47035 * 60.00419 * 19 17 15 21 21 H 1.48503 * 109.46845 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47237 * 300.00175 * 19 17 15 23 23 C 1.50706 * 109.46984 * 175.00042 * 12 11 10 24 24 C 1.38236 * 120.00007 * 279.72707 * 23 12 11 25 25 C 1.38236 * 119.99909 * 179.79031 * 24 23 12 26 26 C 1.38235 * 119.99640 * 0.43835 * 25 24 23 27 27 C 1.38238 * 120.00463 * 359.81507 * 26 25 24 28 28 C 1.38232 * 119.99750 * 359.97438 * 27 26 25 29 29 C 1.38583 * 120.75383 * 89.99773 * 3 2 1 30 30 H 1.09001 * 109.47088 * 300.00366 * 1 2 3 31 31 H 1.09012 * 109.47025 * 59.99810 * 1 2 3 32 32 H 1.08996 * 109.47513 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47088 * 239.99634 * 2 1 3 34 34 H 1.08996 * 109.47063 * 120.00570 * 2 1 3 35 35 H 1.07996 * 120.32981 * 359.97438 * 4 3 2 36 36 H 1.08001 * 119.55088 * 179.97438 * 5 4 3 37 37 H 0.96998 * 120.00029 * 0.02562 * 10 8 7 38 38 H 1.08995 * 109.47278 * 60.00770 * 11 10 8 39 39 H 1.08999 * 109.47319 * 300.00694 * 11 10 8 40 40 H 0.96999 * 120.00180 * 24.99002 * 14 12 11 41 41 H 0.97001 * 120.00638 * 359.71685 * 18 17 15 42 42 H 1.08004 * 119.99921 * 359.97438 * 24 23 12 43 43 H 1.07994 * 119.99924 * 180.27852 * 25 24 23 44 44 H 1.08000 * 119.99832 * 179.83172 * 26 25 24 45 45 H 1.07999 * 120.00414 * 179.97438 * 27 26 25 46 46 H 1.07994 * 120.00128 * 179.97438 * 28 27 26 47 47 H 1.07997 * 120.47366 * 359.95769 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2691 2.0889 -1.1913 5 6 2.7315 3.3947 -1.1574 6 7 2.9428 4.0069 -0.0127 7 6 2.7336 3.4014 1.1497 8 6 2.9907 4.1298 2.4142 9 8 2.7962 3.5820 3.4813 10 7 3.4405 5.3999 2.3808 11 6 3.6952 6.1198 3.6310 12 6 4.1944 7.5310 3.3142 13 1 5.1610 7.4708 2.8140 14 7 3.2322 8.2042 2.4382 15 6 3.6466 9.2196 1.6183 16 1 4.6827 9.5245 1.6177 17 6 2.7350 9.8571 0.7878 18 7 1.4714 9.4891 0.7926 19 14 3.3003 11.2428 -0.3301 20 1 4.3396 10.7349 -1.2612 21 1 2.1440 11.7524 -1.1101 22 1 3.8667 12.3423 0.4919 23 6 4.3393 8.3119 4.5950 24 6 3.2274 8.8811 5.1871 25 6 3.3597 9.5936 6.3642 26 6 4.6053 9.7446 6.9444 27 6 5.7180 9.1798 6.3496 28 6 5.5850 8.4636 5.1748 29 6 2.2687 2.0889 1.1909 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8899 35 1 2.0957 1.5964 -2.1366 36 1 2.9174 3.9181 -2.0836 37 1 3.5956 5.8372 1.5290 38 1 4.4510 5.5881 4.2090 39 1 2.7731 6.1821 4.2088 40 1 2.3016 7.9305 2.4388 41 1 1.1778 8.7698 1.3733 42 1 2.2548 8.7665 4.7315 43 1 2.4904 10.0345 6.8291 44 1 4.7091 10.3036 7.8626 45 1 6.6912 9.2982 6.8026 46 1 6.4543 8.0227 4.7098 47 1 2.0947 1.5990 2.1376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567659901.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:23 Heat of formation + Delta-G solvation = 9.642293 kcal Electronic energy + Delta-G solvation = -28331.787281 eV Core-core repulsion = 24478.437631 eV Total energy + Delta-G solvation = -3853.349650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.76491 -40.55171 -39.91554 -37.60796 -36.08643 -35.44737 -33.77971 -32.46931 -31.75704 -31.33271 -31.04256 -29.05220 -26.13119 -25.50452 -25.07614 -24.03909 -23.31968 -23.01231 -21.64624 -21.18479 -19.47617 -18.82488 -18.11140 -17.70465 -17.07279 -16.80367 -16.74497 -16.49502 -16.11653 -15.88713 -15.81884 -15.51820 -15.17717 -14.97756 -14.68999 -14.58873 -14.44738 -14.25031 -14.13246 -13.77521 -13.49577 -13.33376 -13.02999 -12.75793 -12.71062 -12.53734 -12.39787 -12.09103 -11.91308 -11.89919 -11.77763 -11.49002 -11.28738 -10.99091 -10.63506 -10.55284 -10.39553 -10.10210 -9.74959 -9.60253 -9.14028 -8.34001 -5.30194 -0.41924 0.17624 0.51292 0.57538 1.58874 1.60248 1.68093 1.83908 2.01188 2.71053 2.79413 2.94034 3.09772 3.44156 3.56257 3.61945 3.71162 3.89407 3.97032 3.99945 4.05432 4.11989 4.21979 4.23670 4.28089 4.33752 4.42224 4.46124 4.55654 4.58921 4.69065 4.72201 4.74551 4.90514 4.92230 4.96508 5.06866 5.13679 5.22581 5.28397 5.32603 5.35092 5.60721 5.61725 5.62737 5.65992 5.86374 6.19498 6.31622 6.51511 6.76279 7.01699 7.06848 7.96072 8.08298 9.16153 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009744 B = 0.003199 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.935404 B = 8751.604230 C =10910.761078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 C -0.046 4.046 4 C -0.133 4.133 5 C 0.090 3.910 6 N -0.488 5.488 7 C 0.055 3.945 8 C 0.562 3.438 9 O -0.572 6.572 10 N -0.694 5.694 11 C 0.128 3.872 12 C 0.210 3.790 13 H 0.066 0.934 14 N -0.729 5.729 15 C -0.320 4.320 16 H 0.065 0.935 17 C -0.095 4.095 18 N -0.972 5.972 19 Si 1.122 2.878 20 H -0.276 1.276 21 H -0.296 1.296 22 H -0.284 1.284 23 C -0.102 4.102 24 C -0.112 4.112 25 C -0.135 4.135 26 C -0.128 4.128 27 C -0.123 4.123 28 C -0.127 4.127 29 C -0.118 4.118 30 H 0.041 0.959 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.181 0.819 36 H 0.185 0.815 37 H 0.416 0.584 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.359 0.641 41 H 0.241 0.759 42 H 0.091 0.909 43 H 0.130 0.870 44 H 0.148 0.852 45 H 0.150 0.850 46 H 0.133 0.867 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.738 -16.244 0.606 16.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 C -0.054 4.054 4 C -0.153 4.153 5 C -0.069 4.069 6 N -0.200 5.200 7 C -0.082 4.082 8 C 0.348 3.652 9 O -0.452 6.452 10 N -0.344 5.344 11 C 0.004 3.996 12 C 0.101 3.899 13 H 0.084 0.916 14 N -0.370 5.370 15 C -0.451 4.451 16 H 0.083 0.917 17 C -0.286 4.286 18 N -0.619 5.619 19 Si 0.948 3.052 20 H -0.202 1.202 21 H -0.222 1.222 22 H -0.211 1.211 23 C -0.105 4.105 24 C -0.131 4.131 25 C -0.153 4.153 26 C -0.146 4.146 27 C -0.141 4.141 28 C -0.145 4.145 29 C -0.140 4.140 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.198 0.802 36 H 0.202 0.798 37 H 0.253 0.747 38 H 0.102 0.898 39 H 0.071 0.929 40 H 0.192 0.808 41 H 0.052 0.948 42 H 0.109 0.891 43 H 0.148 0.852 44 H 0.166 0.834 45 H 0.168 0.832 46 H 0.151 0.849 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.664 -14.556 0.249 15.287 hybrid contribution -0.434 -1.323 0.911 1.664 sum 4.230 -15.878 1.160 16.473 Atomic orbital electron populations 1.21768 0.93842 1.03113 1.01871 1.20672 0.96646 0.89357 1.05138 1.20724 0.94761 0.98192 0.91738 1.22682 0.97195 0.95133 1.00254 1.23368 0.94620 0.93233 0.95705 1.67540 1.15028 1.38634 0.98830 1.20949 1.02114 0.93441 0.91652 1.18344 0.76925 0.81789 0.88167 1.90708 1.54597 1.68729 1.31216 1.45873 1.64606 1.12845 1.11066 1.21558 1.00736 0.91623 0.85725 1.19445 0.93777 0.88473 0.88220 0.91647 1.42464 1.06943 1.41005 1.46637 1.20211 0.95722 1.11849 1.17366 0.91732 1.26947 0.93944 1.05332 1.02406 1.70993 1.16554 1.31851 1.42536 0.82685 0.74522 0.73311 0.74652 1.20165 1.22213 1.21104 1.20801 0.94053 0.99218 0.96443 1.20901 0.98167 0.98318 0.95670 1.21348 0.98955 0.99308 0.95677 1.21420 0.92093 1.00211 1.00860 1.21432 0.99800 0.97434 0.95411 1.21269 0.96444 1.00075 0.96740 1.22085 0.97560 0.93530 1.00777 0.93943 0.92214 0.90100 0.87714 0.89827 0.80195 0.79824 0.74665 0.89777 0.92863 0.80824 0.94834 0.89079 0.85243 0.83433 0.83233 0.84929 0.83892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.89 71.98 0.71 -1.08 16 2 C -0.08 -0.97 6.11 29.85 0.18 -0.79 16 3 C -0.05 -0.89 5.17 -19.69 -0.10 -0.99 16 4 C -0.13 -2.29 9.82 22.44 0.22 -2.07 16 5 C 0.09 2.12 11.18 84.82 0.95 3.07 16 6 N -0.49 -15.81 9.54 -184.91 -1.76 -17.58 16 7 C 0.06 1.84 6.75 41.91 0.28 2.12 16 8 C 0.56 21.51 7.81 86.88 0.68 22.19 16 9 O -0.57 -23.78 16.32 -3.78 -0.06 -23.84 16 10 N -0.69 -26.74 5.38 -465.66 -2.50 -29.25 16 11 C 0.13 4.80 5.21 86.38 0.45 5.25 16 12 C 0.21 8.43 2.65 44.25 0.12 8.55 16 13 H 0.07 2.62 7.94 -2.39 -0.02 2.60 16 14 N -0.73 -35.68 3.79 -326.47 -1.24 -36.91 16 15 C -0.32 -17.50 9.92 84.04 0.83 -16.66 16 16 H 0.06 3.48 7.83 -2.91 -0.02 3.46 16 17 C -0.09 -5.40 5.50 84.86 0.47 -4.94 16 18 N -0.97 -60.38 13.70 21.65 0.30 -60.09 16 19 Si 1.12 52.05 29.92 68.60 2.05 54.10 16 20 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 C -0.10 -3.85 4.92 -19.86 -0.10 -3.95 16 24 C -0.11 -4.37 9.33 22.27 0.21 -4.16 16 25 C -0.13 -4.37 10.05 22.27 0.22 -4.14 16 26 C -0.13 -3.47 10.05 22.27 0.22 -3.25 16 27 C -0.12 -3.30 10.05 22.27 0.22 -3.07 16 28 C -0.13 -4.00 9.67 22.27 0.22 -3.78 16 29 C -0.12 -3.17 9.34 22.61 0.21 -2.96 16 30 H 0.04 0.65 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.10 0.76 8.10 -2.39 -0.02 0.74 16 34 H 0.08 0.96 8.10 -2.39 -0.02 0.94 16 35 H 0.18 1.56 8.06 -2.91 -0.02 1.53 16 36 H 0.18 3.32 8.06 -2.91 -0.02 3.30 16 37 H 0.42 17.03 7.47 -92.71 -0.69 16.34 16 38 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 39 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.36 18.98 6.63 -92.71 -0.61 18.36 16 41 H 0.24 15.14 6.77 -92.71 -0.63 14.51 16 42 H 0.09 3.97 7.71 -2.91 -0.02 3.95 16 43 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 44 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 45 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 46 H 0.13 3.62 8.04 -2.91 -0.02 3.59 16 47 H 0.14 3.76 7.64 -2.91 -0.02 3.74 16 Total: -1.00 -73.66 400.61 2.60 -71.06 By element: Atomic # 1 Polarization: 53.35 SS G_CDS: -0.18 Total: 53.17 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: 6.00 Total: -10.66 kcal Atomic # 7 Polarization: -138.61 SS G_CDS: -5.21 Total: -143.82 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.06 Total: -23.84 kcal Atomic # 14 Polarization: 52.05 SS G_CDS: 2.05 Total: 54.10 kcal Total: -73.66 2.60 -71.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567659901.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.703 kcal (2) G-P(sol) polarization free energy of solvation -73.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds