Wall clock time and date at job start Tue Mar 31 2020 22:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30276 * 126.28250 * 2 1 4 4 N 1.28674 * 109.37873 * 179.97438 * 3 2 1 5 5 C 1.30272 * 109.38187 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.28028 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47433 * 89.97372 * 6 5 4 8 8 O 1.21290 * 119.99589 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00366 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99944 * 179.97438 * 9 7 6 11 11 H 1.08992 * 109.47081 * 35.00606 * 10 9 7 12 12 C 1.52994 * 109.47125 * 274.99671 * 10 9 7 13 13 C 1.53009 * 109.46901 * 155.00203 * 10 9 7 14 14 C 1.53000 * 109.46668 * 294.99890 * 13 10 9 15 15 N 1.46909 * 109.46823 * 179.97438 * 14 13 10 16 16 C 1.46897 * 110.99755 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.46880 * 180.02562 * 16 15 14 18 18 O 1.21295 * 120.00018 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00218 * 179.97438 * 17 16 15 20 20 C 1.37100 * 120.00107 * 179.97438 * 19 17 16 21 21 H 1.07994 * 120.00183 * 0.02562 * 20 19 17 22 22 C 1.38952 * 119.99693 * 180.02562 * 20 19 17 23 23 N 1.31404 * 120.00722 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99622 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47544 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.47445 * 120.00075 * 24 22 20 27 27 H 1.48506 * 109.47225 * 239.99759 * 24 22 20 28 28 O 1.34364 * 107.43764 * 359.97438 * 5 4 3 29 29 H 1.08997 * 109.47444 * 90.01974 * 1 2 3 30 30 H 1.09002 * 109.46698 * 210.02579 * 1 2 3 31 31 H 1.09002 * 109.47090 * 330.01523 * 1 2 3 32 32 H 1.09006 * 109.47243 * 209.97514 * 6 5 4 33 33 H 1.09004 * 109.47210 * 329.97528 * 6 5 4 34 34 H 0.97002 * 119.99798 * 359.97438 * 9 7 6 35 35 H 1.08999 * 109.47123 * 60.00485 * 12 10 9 36 36 H 1.09000 * 109.47016 * 180.02562 * 12 10 9 37 37 H 1.08998 * 109.47612 * 300.00767 * 12 10 9 38 38 H 1.09000 * 109.47245 * 54.99632 * 13 10 9 39 39 H 1.08992 * 109.47251 * 175.00286 * 13 10 9 40 40 H 1.08997 * 109.47791 * 299.99941 * 14 13 10 41 41 H 1.09001 * 109.47443 * 60.00550 * 14 13 10 42 42 H 1.00904 * 110.99481 * 56.04805 * 15 14 13 43 43 H 1.09000 * 109.47324 * 299.99934 * 16 15 14 44 44 H 1.08994 * 109.47385 * 60.00538 * 16 15 14 45 45 H 0.97004 * 119.99943 * 359.97438 * 19 17 16 46 46 H 0.96998 * 120.00738 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6760 0.0005 5 6 3.5654 -0.6255 0.0004 6 6 4.8176 -1.4639 0.0014 7 6 5.2342 -1.7431 1.4225 8 8 4.5783 -1.3048 2.3438 9 7 6.3347 -2.4806 1.6696 10 6 6.7399 -2.7515 3.0512 11 1 5.8529 -2.8664 3.6741 12 6 7.5825 -1.5862 3.5734 13 6 7.5656 -4.0388 3.0974 14 6 6.6858 -5.2237 2.6938 15 7 7.4788 -6.4596 2.7376 16 6 6.6650 -7.6210 2.3545 17 6 7.5101 -8.8674 2.4117 18 8 8.6757 -8.7953 2.7397 19 7 6.9707 -10.0623 2.0992 20 6 7.7398 -11.1961 2.1507 21 1 8.7777 -11.1319 2.4420 22 6 7.1837 -12.4280 1.8281 23 7 5.9207 -12.5064 1.4741 24 14 8.2314 -13.9729 1.8990 25 1 9.6094 -13.6176 2.3232 26 1 7.6430 -14.9259 2.8742 27 1 8.2748 -14.6037 0.5552 28 8 2.3021 -1.0832 0.0002 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3633 0.8901 0.5136 32 1 4.6248 -2.4057 -0.5124 33 1 5.6151 -0.9265 -0.5120 34 1 6.8586 -2.8320 0.9328 35 1 6.9943 -0.6691 3.5406 36 1 7.8843 -1.7880 4.6012 37 1 8.4695 -1.4713 2.9505 38 1 8.4047 -3.9573 2.4064 39 1 7.9415 -4.1933 4.1088 40 1 5.8468 -5.3053 3.3847 41 1 6.3100 -5.0693 1.6824 42 1 7.8922 -6.5919 3.6485 43 1 5.8258 -7.7197 3.0430 44 1 6.2890 -7.4828 1.3408 45 1 6.0383 -10.1202 1.8379 46 1 5.5326 -13.3663 1.2486 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568627581.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:46 Heat of formation + Delta-G solvation = -42.832925 kcal Electronic energy + Delta-G solvation = -28020.888161 eV Core-core repulsion = 23754.413752 eV Total energy + Delta-G solvation = -4266.474410 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.55892 -40.30440 -38.36941 -37.11521 -36.48951 -35.09877 -34.04728 -33.86671 -32.35431 -31.27698 -30.86346 -29.30714 -27.62646 -26.28188 -24.24905 -23.59808 -22.92867 -22.33663 -21.45239 -20.89726 -19.28216 -18.24786 -17.91672 -17.57163 -17.14729 -16.65292 -16.23080 -15.94531 -15.65970 -15.06813 -14.99918 -14.63996 -14.50507 -14.18721 -13.96922 -13.84956 -13.70716 -13.64850 -13.27297 -13.19279 -13.09115 -12.70697 -12.61241 -12.33866 -12.30218 -12.17459 -11.71720 -11.54468 -11.35295 -11.31505 -11.30594 -11.09753 -10.99322 -10.46651 -10.36938 -10.25643 -9.80448 -9.55363 -9.49636 -8.51436 -8.12209 -7.99618 -6.45071 -3.86018 0.75441 1.79234 2.01766 2.13970 2.76496 3.13859 3.24691 3.31867 3.36589 3.86779 3.93268 3.97838 4.17791 4.24420 4.33411 4.56592 4.72240 4.77258 4.78612 4.82394 4.86886 4.96331 5.06552 5.12048 5.17424 5.20071 5.26036 5.28195 5.39601 5.44785 5.49693 5.59979 5.74040 5.82323 5.88709 5.94027 6.00434 6.15310 6.22696 7.02720 7.14478 7.52273 7.59234 7.73689 7.95467 8.03127 8.57574 9.14586 9.50750 10.01925 10.72695 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014420 B = 0.001729 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.273644 B =16187.855816 C =17767.558315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.166 3.834 3 N -0.289 5.289 4 N -0.274 5.274 5 C 0.183 3.817 6 C -0.048 4.048 7 C 0.520 3.480 8 O -0.530 6.530 9 N -0.717 5.717 10 C 0.144 3.856 11 H 0.089 0.911 12 C -0.163 4.163 13 C -0.126 4.126 14 C 0.058 3.942 15 N -0.669 5.669 16 C 0.051 3.949 17 C 0.440 3.560 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 O -0.220 6.220 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.131 0.869 33 H 0.143 0.857 34 H 0.406 0.594 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.026 0.974 41 H 0.069 0.931 42 H 0.349 0.651 43 H 0.043 0.957 44 H 0.085 0.915 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.310 23.526 -3.689 25.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.044 4.044 3 N -0.137 5.137 4 N -0.120 5.120 5 C -0.029 4.029 6 C -0.090 4.090 7 C 0.304 3.696 8 O -0.406 6.406 9 N -0.369 5.369 10 C 0.040 3.960 11 H 0.107 0.893 12 C -0.221 4.221 13 C -0.164 4.164 14 C -0.071 4.071 15 N -0.302 5.302 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 O -0.099 6.099 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.126 0.874 32 H 0.149 0.851 33 H 0.161 0.839 34 H 0.241 0.759 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.045 0.955 41 H 0.088 0.912 42 H 0.169 0.831 43 H 0.061 0.939 44 H 0.103 0.897 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.477 25.024 -3.466 26.347 hybrid contribution -0.846 -2.421 0.222 2.574 sum -8.324 22.604 -3.244 24.305 Atomic orbital electron populations 1.20384 0.80066 1.05930 1.05291 1.28021 0.97866 0.79498 0.99060 1.74393 0.95952 1.25584 1.17774 1.74351 1.12414 1.08897 1.16352 1.26805 0.84736 0.91264 1.00087 1.20118 0.90286 1.00925 0.97628 1.20008 0.80956 0.78602 0.90035 1.90785 1.53414 1.50453 1.45914 1.46016 1.27624 1.53671 1.09633 1.21031 0.98386 0.94487 0.82117 0.89296 1.22164 1.00011 0.98399 1.01570 1.21888 0.98732 0.92142 1.03632 1.21969 0.94484 0.89801 1.00870 1.60091 1.33340 1.00617 1.36137 1.21663 0.94581 0.90635 1.01317 1.19808 0.88620 0.84309 0.84707 1.90523 1.17316 1.86111 1.52812 1.41877 1.13166 1.05495 1.59500 1.19761 0.96193 0.83916 1.43031 0.87831 1.25273 0.96205 0.99438 0.97073 1.69613 1.12036 1.26523 1.46126 0.85794 0.79892 0.80810 0.77810 1.19194 1.20760 1.20731 1.84760 1.17343 1.38322 1.69436 0.88186 0.88709 0.87437 0.85096 0.83948 0.75927 0.92105 0.91329 0.92107 0.89989 0.90017 0.95539 0.91212 0.83131 0.93929 0.89694 0.77473 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.51 36.00 0.38 0.13 16 2 C 0.17 1.60 8.48 -12.94 -0.11 1.49 16 3 N -0.29 -3.62 12.22 32.55 0.40 -3.22 16 4 N -0.27 -3.52 12.22 32.55 0.40 -3.13 16 5 C 0.18 1.92 6.97 -12.94 -0.09 1.83 16 6 C -0.05 -0.30 6.33 -29.04 -0.18 -0.48 16 7 C 0.52 4.69 7.79 -10.99 -0.09 4.60 16 8 O -0.53 -7.28 15.70 5.55 0.09 -7.20 16 9 N -0.72 -4.93 4.53 -53.81 -0.24 -5.18 16 10 C 0.14 1.17 2.58 -67.93 -0.17 0.99 16 11 H 0.09 0.89 7.58 -51.93 -0.39 0.49 16 12 C -0.16 -1.26 9.48 37.15 0.35 -0.91 16 13 C -0.13 -1.06 5.01 -26.73 -0.13 -1.19 16 14 C 0.06 0.63 5.57 -3.82 -0.02 0.61 16 15 N -0.67 -10.02 6.13 -115.06 -0.70 -10.72 16 16 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 17 C 0.44 10.19 7.82 -10.99 -0.09 10.10 16 18 O -0.58 -15.57 15.78 5.54 0.09 -15.49 16 19 N -0.56 -14.10 5.29 -10.96 -0.06 -14.16 16 20 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.28 13.05 55.50 0.72 -23.56 16 24 Si 0.93 20.81 29.55 -169.99 -5.02 15.78 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 O -0.22 -2.32 10.87 5.37 0.06 -2.26 16 29 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.13 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.14 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.41 1.75 8.60 -40.82 -0.35 1.40 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.69 7.75 -51.93 -0.40 0.29 16 42 H 0.35 5.45 8.43 -39.29 -0.33 5.12 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 46 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 400.12 15.07 6.03 6.03 Total: -1.00 -37.83 400.12 -5.48 -43.31 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -6.81 Total: 9.71 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: -0.43 Total: 10.07 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: 0.51 Total: -59.96 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: 0.23 Total: -24.94 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.83 -5.48 -43.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568627581.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.478 kcal (2) G-P(sol) polarization free energy of solvation -37.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds