Wall clock time and date at job start Tue Mar 31 2020 22:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30276 * 126.28250 * 2 1 4 4 N 1.28674 * 109.37873 * 179.97438 * 3 2 1 5 5 C 1.30272 * 109.38187 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.28028 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47433 * 89.97372 * 6 5 4 8 8 O 1.21290 * 119.99589 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00366 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99944 * 179.97438 * 9 7 6 11 11 H 1.08992 * 109.47081 * 35.00606 * 10 9 7 12 12 C 1.52994 * 109.47125 * 274.99671 * 10 9 7 13 13 C 1.53009 * 109.46901 * 155.00203 * 10 9 7 14 14 C 1.53000 * 109.46668 * 294.99890 * 13 10 9 15 15 N 1.46909 * 109.46823 * 179.97438 * 14 13 10 16 16 C 1.46897 * 110.99755 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.46880 * 180.02562 * 16 15 14 18 18 O 1.21295 * 120.00018 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00218 * 179.97438 * 17 16 15 20 20 C 1.37100 * 120.00107 * 179.97438 * 19 17 16 21 21 H 1.07994 * 120.00183 * 0.02562 * 20 19 17 22 22 C 1.38952 * 119.99693 * 180.02562 * 20 19 17 23 23 N 1.31404 * 120.00722 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99622 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47544 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.47445 * 120.00075 * 24 22 20 27 27 H 1.48506 * 109.47225 * 239.99759 * 24 22 20 28 28 O 1.34364 * 107.43764 * 359.97438 * 5 4 3 29 29 H 1.08997 * 109.47444 * 90.01974 * 1 2 3 30 30 H 1.09002 * 109.46698 * 210.02579 * 1 2 3 31 31 H 1.09002 * 109.47090 * 330.01523 * 1 2 3 32 32 H 1.09006 * 109.47243 * 209.97514 * 6 5 4 33 33 H 1.09004 * 109.47210 * 329.97528 * 6 5 4 34 34 H 0.97002 * 119.99798 * 359.97438 * 9 7 6 35 35 H 1.08999 * 109.47123 * 60.00485 * 12 10 9 36 36 H 1.09000 * 109.47016 * 180.02562 * 12 10 9 37 37 H 1.08998 * 109.47612 * 300.00767 * 12 10 9 38 38 H 1.09000 * 109.47245 * 54.99632 * 13 10 9 39 39 H 1.08992 * 109.47251 * 175.00286 * 13 10 9 40 40 H 1.08997 * 109.47791 * 299.99941 * 14 13 10 41 41 H 1.09001 * 109.47443 * 60.00550 * 14 13 10 42 42 H 1.00904 * 110.99481 * 56.04805 * 15 14 13 43 43 H 1.09000 * 109.47324 * 299.99934 * 16 15 14 44 44 H 1.08994 * 109.47385 * 60.00538 * 16 15 14 45 45 H 0.97004 * 119.99943 * 359.97438 * 19 17 16 46 46 H 0.96998 * 120.00738 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6760 0.0005 5 6 3.5654 -0.6255 0.0004 6 6 4.8176 -1.4639 0.0014 7 6 5.2342 -1.7431 1.4225 8 8 4.5783 -1.3048 2.3438 9 7 6.3347 -2.4806 1.6696 10 6 6.7399 -2.7515 3.0512 11 1 5.8529 -2.8664 3.6741 12 6 7.5825 -1.5862 3.5734 13 6 7.5656 -4.0388 3.0974 14 6 6.6858 -5.2237 2.6938 15 7 7.4788 -6.4596 2.7376 16 6 6.6650 -7.6210 2.3545 17 6 7.5101 -8.8674 2.4117 18 8 8.6757 -8.7953 2.7397 19 7 6.9707 -10.0623 2.0992 20 6 7.7398 -11.1961 2.1507 21 1 8.7777 -11.1319 2.4420 22 6 7.1837 -12.4280 1.8281 23 7 5.9207 -12.5064 1.4741 24 14 8.2314 -13.9729 1.8990 25 1 9.6094 -13.6176 2.3232 26 1 7.6430 -14.9259 2.8742 27 1 8.2748 -14.6037 0.5552 28 8 2.3021 -1.0832 0.0002 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3633 0.8901 0.5136 32 1 4.6248 -2.4057 -0.5124 33 1 5.6151 -0.9265 -0.5120 34 1 6.8586 -2.8320 0.9328 35 1 6.9943 -0.6691 3.5406 36 1 7.8843 -1.7880 4.6012 37 1 8.4695 -1.4713 2.9505 38 1 8.4047 -3.9573 2.4064 39 1 7.9415 -4.1933 4.1088 40 1 5.8468 -5.3053 3.3847 41 1 6.3100 -5.0693 1.6824 42 1 7.8922 -6.5919 3.6485 43 1 5.8258 -7.7197 3.0430 44 1 6.2890 -7.4828 1.3408 45 1 6.0383 -10.1202 1.8379 46 1 5.5326 -13.3663 1.2486 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568627581.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:45 Heat of formation + Delta-G solvation = -77.841382 kcal Electronic energy + Delta-G solvation = -28022.406242 eV Core-core repulsion = 23754.413752 eV Total energy + Delta-G solvation = -4267.992490 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.30776 -41.02392 -40.14368 -38.02855 -37.27323 -36.31404 -35.69916 -34.69120 -33.29965 -33.02283 -31.48224 -30.25462 -28.25576 -27.78022 -25.80692 -24.42582 -23.63327 -23.24976 -22.18795 -21.58724 -21.05024 -19.90752 -18.95276 -18.29563 -17.92946 -17.76784 -17.35850 -17.00516 -16.59979 -16.46451 -15.95438 -15.78293 -15.62714 -15.33013 -15.16326 -14.93170 -14.72313 -14.36514 -13.99466 -13.89333 -13.71863 -13.58717 -13.50608 -13.49637 -13.34823 -13.17058 -12.97917 -12.93592 -12.79465 -12.40983 -12.21385 -12.11449 -12.10417 -12.04698 -11.76758 -11.51067 -11.23506 -10.53480 -10.35165 -10.17509 -10.01432 -9.33323 -8.46828 -5.95518 0.04985 1.15616 1.27068 1.37047 1.42716 1.47613 1.56725 2.05419 2.15009 2.29319 2.78459 2.89701 3.20617 3.36154 3.49225 3.63988 3.82170 3.95576 4.04417 4.12021 4.12139 4.32938 4.33458 4.40117 4.44475 4.50317 4.54770 4.55092 4.57396 4.63290 4.69677 4.70778 4.83175 4.91687 5.02791 5.07235 5.22431 5.32036 5.41546 5.49604 5.89319 6.10666 6.40098 6.45717 6.60022 7.12823 7.13749 7.18611 7.56526 8.11569 8.70732 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014420 B = 0.001729 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.273644 B =16187.855816 C =17767.558315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.171 3.829 3 N -0.332 5.332 4 N -0.311 5.311 5 C 0.180 3.820 6 C -0.044 4.044 7 C 0.520 3.480 8 O -0.584 6.584 9 N -0.702 5.702 10 C 0.150 3.850 11 H 0.069 0.931 12 C -0.158 4.158 13 C -0.114 4.114 14 C 0.060 3.940 15 N -0.680 5.680 16 C 0.065 3.935 17 C 0.437 3.563 18 O -0.623 6.623 19 N -0.574 5.574 20 C -0.333 4.333 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.272 1.272 27 H -0.271 1.271 28 O -0.229 6.229 29 H 0.124 0.876 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.168 0.832 33 H 0.173 0.827 34 H 0.421 0.579 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.026 0.974 41 H 0.083 0.917 42 H 0.344 0.656 43 H 0.061 0.939 44 H 0.106 0.894 45 H 0.396 0.604 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.654 23.092 -4.719 25.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.040 4.040 3 N -0.178 5.178 4 N -0.157 5.157 5 C -0.033 4.033 6 C -0.084 4.084 7 C 0.305 3.695 8 O -0.464 6.464 9 N -0.355 5.355 10 C 0.045 3.955 11 H 0.087 0.913 12 C -0.216 4.216 13 C -0.152 4.152 14 C -0.068 4.068 15 N -0.312 5.312 16 C -0.068 4.068 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.211 5.211 20 C -0.463 4.463 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.197 1.197 27 H -0.196 1.196 28 O -0.109 6.109 29 H 0.142 0.858 30 H 0.129 0.871 31 H 0.136 0.864 32 H 0.185 0.815 33 H 0.190 0.810 34 H 0.260 0.740 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.045 0.955 41 H 0.102 0.898 42 H 0.162 0.838 43 H 0.079 0.921 44 H 0.124 0.876 45 H 0.230 0.770 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.821 24.610 -4.530 26.217 hybrid contribution -0.760 -2.245 0.564 2.436 sum -8.581 22.365 -3.966 24.281 Atomic orbital electron populations 1.20730 0.76599 1.07151 1.07166 1.29047 0.99482 0.78734 0.96760 1.74302 0.96383 1.27112 1.20022 1.74247 1.13038 1.10399 1.18015 1.27561 0.85779 0.91175 0.98756 1.20403 0.89360 1.02478 0.96147 1.20441 0.80627 0.77803 0.90598 1.90770 1.55195 1.52680 1.47742 1.45901 1.27100 1.52781 1.09761 1.20873 0.97552 0.94515 0.82532 0.91259 1.22110 1.00009 0.97182 1.02344 1.21772 0.98397 0.91042 1.03961 1.22061 0.94419 0.88562 1.01791 1.60119 1.33980 1.01172 1.35916 1.21531 0.93821 0.88280 1.03159 1.20906 0.88691 0.85488 0.82427 1.90492 1.19448 1.86952 1.54015 1.41952 1.13195 1.05730 1.60254 1.19711 0.95798 0.85700 1.45083 0.90258 1.26042 0.97408 1.01764 0.96126 1.69669 1.12940 1.27571 1.45972 0.84869 0.77972 0.77178 0.78304 1.19746 1.19702 1.19610 1.84781 1.17648 1.38721 1.69746 0.85772 0.87128 0.86442 0.81473 0.80961 0.74034 0.94034 0.90710 0.90788 0.89230 0.89832 0.95532 0.89849 0.83783 0.92095 0.87568 0.76989 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.41 10.51 71.24 0.75 0.34 16 2 C 0.17 3.23 8.48 88.34 0.75 3.98 16 3 N -0.33 -8.47 12.22 -165.50 -2.02 -10.49 16 4 N -0.31 -8.16 12.22 -165.50 -2.02 -10.18 16 5 C 0.18 3.67 6.97 88.34 0.62 4.29 16 6 C -0.04 -0.45 6.33 29.10 0.18 -0.26 16 7 C 0.52 8.69 7.79 87.66 0.68 9.37 16 8 O -0.58 -16.18 15.70 -3.06 -0.05 -16.22 16 9 N -0.70 -8.17 4.53 -442.53 -2.00 -10.18 16 10 C 0.15 2.22 2.58 44.99 0.12 2.33 16 11 H 0.07 1.35 7.58 -2.39 -0.02 1.33 16 12 C -0.16 -2.26 9.48 71.98 0.68 -1.58 16 13 C -0.11 -1.66 5.01 30.60 0.15 -1.51 16 14 C 0.06 1.15 5.57 86.30 0.48 1.63 16 15 N -0.68 -19.09 6.13 -517.93 -3.17 -22.26 16 16 C 0.06 2.07 6.17 85.56 0.53 2.60 16 17 C 0.44 20.16 7.82 87.66 0.69 20.85 16 18 O -0.62 -33.59 15.78 -3.07 -0.05 -33.64 16 19 N -0.57 -28.84 5.29 -306.99 -1.62 -30.47 16 20 C -0.33 -18.67 9.68 84.04 0.81 -17.85 16 21 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 22 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 23 N -0.92 -48.96 13.05 21.66 0.28 -48.68 16 24 Si 0.99 42.29 29.55 68.60 2.03 44.31 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 27 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 28 O -0.23 -4.69 10.87 -3.71 -0.04 -4.73 16 29 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.17 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.17 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.42 2.28 8.60 -92.71 -0.80 1.48 16 35 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.08 1.38 7.75 -2.39 -0.02 1.36 16 42 H 0.34 10.34 8.43 -89.69 -0.76 9.58 16 43 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 45 H 0.40 18.87 7.90 -92.71 -0.73 18.14 16 46 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -85.15 400.12 -3.01 -88.16 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: -1.25 Total: 30.46 kcal Atomic # 6 Polarization: 17.02 SS G_CDS: 6.91 Total: 23.92 kcal Atomic # 7 Polarization: -121.69 SS G_CDS: -10.56 Total: -132.25 kcal Atomic # 8 Polarization: -54.46 SS G_CDS: -0.14 Total: -54.60 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Total: -85.15 -3.01 -88.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568627581.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.316 kcal (2) G-P(sol) polarization free energy of solvation -85.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds