Wall clock time and date at job start Tue Mar 31 2020 22:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30276 * 126.28250 * 2 1 4 4 N 1.28674 * 109.37873 * 179.97438 * 3 2 1 5 5 C 1.30272 * 109.38187 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.28028 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47433 * 89.97372 * 6 5 4 8 8 O 1.21290 * 119.99589 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00366 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99944 * 179.97438 * 9 7 6 11 11 H 1.08994 * 109.47084 * 324.99961 * 10 9 7 12 12 C 1.52996 * 109.46906 * 85.00398 * 10 9 7 13 13 C 1.53007 * 109.46728 * 204.99744 * 10 9 7 14 14 C 1.52997 * 109.46974 * 65.00680 * 13 10 9 15 15 N 1.46903 * 109.47272 * 179.97438 * 14 13 10 16 16 C 1.46902 * 110.99991 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.46634 * 179.97438 * 16 15 14 18 18 O 1.21290 * 120.00433 * 0.02562 * 17 16 15 19 19 N 1.34784 * 119.99606 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99854 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99806 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00039 * 180.02562 * 20 19 17 23 23 N 1.31412 * 119.99781 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00199 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47221 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47184 * 119.99942 * 24 22 20 27 27 H 1.48494 * 109.47278 * 240.00072 * 24 22 20 28 28 O 1.34364 * 107.43764 * 359.97438 * 5 4 3 29 29 H 1.08997 * 109.47444 * 90.01974 * 1 2 3 30 30 H 1.09002 * 109.46698 * 210.02579 * 1 2 3 31 31 H 1.09002 * 109.47090 * 330.01523 * 1 2 3 32 32 H 1.09006 * 109.47243 * 209.97514 * 6 5 4 33 33 H 1.09004 * 109.47210 * 329.97528 * 6 5 4 34 34 H 0.97002 * 119.99798 * 359.97438 * 9 7 6 35 35 H 1.09007 * 109.47678 * 59.99544 * 12 10 9 36 36 H 1.09000 * 109.46963 * 179.97438 * 12 10 9 37 37 H 1.09006 * 109.47026 * 299.99795 * 12 10 9 38 38 H 1.09003 * 109.46420 * 185.00193 * 13 10 9 39 39 H 1.08994 * 109.47292 * 305.00390 * 13 10 9 40 40 H 1.09007 * 109.46951 * 299.99550 * 14 13 10 41 41 H 1.09005 * 109.47526 * 59.99271 * 14 13 10 42 42 H 1.00894 * 110.99400 * 303.95384 * 15 14 13 43 43 H 1.08995 * 109.47303 * 299.99791 * 16 15 14 44 44 H 1.08993 * 109.46933 * 60.00142 * 16 15 14 45 45 H 0.96997 * 119.99957 * 359.97438 * 19 17 16 46 46 H 0.97001 * 119.99504 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6760 0.0005 5 6 3.5654 -0.6255 0.0004 6 6 4.8176 -1.4639 0.0014 7 6 5.2342 -1.7431 1.4225 8 8 4.5783 -1.3048 2.3438 9 7 6.3347 -2.4806 1.6696 10 6 6.7399 -2.7515 3.0512 11 1 6.5091 -1.8870 3.6737 12 6 5.9825 -3.9735 3.5745 13 6 8.2444 -3.0260 3.0969 14 6 9.0059 -1.7622 2.6924 15 7 10.4505 -2.0255 2.7368 16 6 11.2153 -0.8315 2.3528 17 6 12.6894 -1.1392 2.4107 18 8 13.0658 -2.2445 2.7391 19 7 13.5895 -0.1861 2.0976 20 6 14.9305 -0.4661 2.1498 21 1 15.2657 -1.4503 2.4422 22 6 15.8585 0.5165 1.8276 23 7 15.4507 1.7142 1.4723 24 14 17.6857 0.1352 1.8994 25 1 17.8810 -1.2744 2.3238 26 1 18.2862 0.3348 0.5559 27 1 18.3427 1.0419 2.8748 28 8 2.3021 -1.0832 0.0002 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3633 0.8901 0.5136 32 1 4.6248 -2.4057 -0.5124 33 1 5.6151 -0.9265 -0.5120 34 1 6.8586 -2.8320 0.9328 35 1 6.2132 -4.8381 2.9519 36 1 6.2842 -4.1754 4.6022 37 1 4.9106 -3.7780 3.5418 38 1 8.5305 -3.3144 4.1085 39 1 8.4876 -3.8335 2.4064 40 1 8.7198 -1.4738 1.6808 41 1 8.7627 -0.9546 3.3829 42 1 10.7297 -2.3566 3.6480 43 1 10.9447 -0.5373 1.3388 44 1 10.9871 -0.0173 3.0405 45 1 13.2884 0.6977 1.8347 46 1 16.0985 2.4001 1.2470 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568627582.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:49 Heat of formation + Delta-G solvation = -42.279355 kcal Electronic energy + Delta-G solvation = -27981.123252 eV Core-core repulsion = 23714.672847 eV Total energy + Delta-G solvation = -4266.450405 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.56271 -40.30513 -38.33920 -37.10593 -36.49469 -35.07860 -34.05287 -33.83870 -32.35789 -31.24897 -30.86643 -29.30103 -27.63750 -26.26033 -24.22830 -23.59955 -22.93543 -22.31967 -21.44397 -20.89745 -19.25138 -18.25113 -17.88742 -17.56262 -17.15272 -16.72756 -16.18583 -15.88289 -15.61047 -15.21421 -14.91691 -14.61601 -14.48903 -14.19024 -13.96949 -13.82216 -13.70304 -13.66319 -13.32076 -13.15413 -13.09644 -12.70043 -12.61952 -12.34820 -12.28026 -12.16024 -11.69421 -11.51863 -11.33359 -11.30018 -11.29187 -11.08172 -10.97868 -10.46884 -10.34672 -10.22920 -9.80930 -9.52658 -9.49822 -8.48416 -8.09108 -7.96649 -6.42171 -3.83152 0.74767 1.77798 2.02809 2.13781 2.76316 3.16114 3.26749 3.33879 3.36205 3.89771 3.93124 3.99915 4.17792 4.24621 4.32895 4.56146 4.72300 4.75473 4.77788 4.81770 4.87939 4.96111 5.08211 5.10409 5.16536 5.22081 5.27411 5.28546 5.37352 5.44309 5.50931 5.60580 5.77281 5.84197 5.87561 5.96395 6.01722 6.15350 6.25984 7.02647 7.17486 7.54948 7.62355 7.73614 7.96389 8.05925 8.60561 9.17352 9.53789 10.04959 10.75587 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017072 B = 0.001660 C = 0.001537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.748908 B =16862.850559 C =18212.996420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.164 3.836 3 N -0.287 5.287 4 N -0.270 5.270 5 C 0.182 3.818 6 C -0.048 4.048 7 C 0.520 3.480 8 O -0.530 6.530 9 N -0.717 5.717 10 C 0.144 3.856 11 H 0.090 0.910 12 C -0.162 4.162 13 C -0.125 4.125 14 C 0.058 3.942 15 N -0.669 5.669 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.584 6.584 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 O -0.222 6.222 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.129 0.871 33 H 0.144 0.856 34 H 0.406 0.594 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.027 0.973 42 H 0.349 0.651 43 H 0.085 0.915 44 H 0.043 0.957 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.214 -7.653 -3.695 30.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.047 4.047 3 N -0.135 5.135 4 N -0.117 5.117 5 C -0.030 4.030 6 C -0.089 4.089 7 C 0.304 3.696 8 O -0.406 6.406 9 N -0.369 5.369 10 C 0.039 3.961 11 H 0.108 0.892 12 C -0.221 4.221 13 C -0.164 4.164 14 C -0.072 4.072 15 N -0.302 5.302 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.542 5.542 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 O -0.101 6.101 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.126 0.874 32 H 0.147 0.853 33 H 0.162 0.838 34 H 0.241 0.759 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.045 0.955 42 H 0.168 0.832 43 H 0.104 0.896 44 H 0.061 0.939 45 H 0.226 0.774 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -28.912 -6.947 -3.472 29.937 hybrid contribution 0.584 -0.279 0.224 0.685 sum -28.329 -7.226 -3.248 29.416 Atomic orbital electron populations 1.20370 0.80096 1.05868 1.05237 1.28014 0.97835 0.79542 0.99285 1.74416 0.95970 1.25569 1.17532 1.74390 1.12319 1.08883 1.16071 1.26818 0.84659 0.91313 1.00164 1.20119 0.90366 1.00807 0.97626 1.20009 0.81175 0.78385 0.90037 1.90784 1.53108 1.50755 1.45911 1.46014 1.27591 1.53702 1.09630 1.21037 0.93963 0.98933 0.82141 0.89222 1.22162 1.00780 0.97515 1.01609 1.21884 0.91844 0.99041 1.03592 1.21972 0.88409 0.95821 1.00974 1.60087 1.02097 1.31970 1.36031 1.21665 0.93684 0.91487 1.01383 1.19811 0.86846 0.86077 0.84688 1.90518 1.80539 1.22913 1.52868 1.41879 1.06078 1.12639 1.59429 1.19758 0.80734 0.99397 1.43050 0.87851 1.25271 1.00711 0.94905 0.97081 1.69624 1.35450 1.03097 1.46069 0.85795 0.81985 0.78727 0.77798 1.19210 1.20740 1.20771 1.84738 1.17376 1.38374 1.69627 0.88233 0.88830 0.87418 0.85263 0.83787 0.75928 0.92153 0.91300 0.92254 0.90038 0.90031 0.91135 0.95476 0.83180 0.89643 0.93885 0.77445 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.22 10.51 36.00 0.38 0.16 16 2 C 0.16 1.54 8.48 -12.94 -0.11 1.43 16 3 N -0.29 -3.66 12.22 32.55 0.40 -3.26 16 4 N -0.27 -3.61 12.22 32.55 0.40 -3.21 16 5 C 0.18 1.91 6.97 -12.94 -0.09 1.82 16 6 C -0.05 -0.30 6.33 -29.04 -0.18 -0.48 16 7 C 0.52 4.68 7.79 -10.99 -0.09 4.60 16 8 O -0.53 -7.28 15.70 5.55 0.09 -7.19 16 9 N -0.72 -4.93 4.53 -53.80 -0.24 -5.17 16 10 C 0.14 1.16 2.57 -67.93 -0.17 0.99 16 11 H 0.09 0.91 7.58 -51.93 -0.39 0.52 16 12 C -0.16 -1.19 9.48 37.16 0.35 -0.84 16 13 C -0.13 -1.07 5.01 -26.73 -0.13 -1.20 16 14 C 0.06 0.64 5.57 -3.82 -0.02 0.62 16 15 N -0.67 -10.23 6.13 -115.06 -0.70 -10.93 16 16 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 17 C 0.44 10.34 7.82 -10.98 -0.09 10.25 16 18 O -0.58 -15.74 15.78 5.55 0.09 -15.65 16 19 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16 20 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 24 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 O -0.22 -2.23 10.87 5.37 0.06 -2.17 16 29 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.13 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.41 1.75 8.60 -40.82 -0.35 1.40 16 35 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.74 7.75 -51.93 -0.40 0.33 16 41 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.35 5.53 8.43 -39.30 -0.33 5.20 16 43 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 46 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 400.13 15.07 6.03 6.03 Total: -1.00 -38.29 400.13 -5.48 -43.77 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -6.81 Total: 9.82 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: -0.43 Total: 10.18 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: 0.51 Total: -60.77 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: 0.23 Total: -25.02 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -38.29 -5.48 -43.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568627582.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.489 kcal (2) G-P(sol) polarization free energy of solvation -38.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds