Wall clock time and date at job start Tue Mar 31 2020 22:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30276 * 126.28250 * 2 1 4 4 N 1.28674 * 109.37873 * 179.97438 * 3 2 1 5 5 C 1.30272 * 109.38187 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.28028 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47433 * 89.97372 * 6 5 4 8 8 O 1.21290 * 119.99589 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00366 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99944 * 179.97438 * 9 7 6 11 11 H 1.08994 * 109.47084 * 324.99961 * 10 9 7 12 12 C 1.52996 * 109.46906 * 85.00398 * 10 9 7 13 13 C 1.53007 * 109.46728 * 204.99744 * 10 9 7 14 14 C 1.52997 * 109.46974 * 65.00680 * 13 10 9 15 15 N 1.46903 * 109.47272 * 179.97438 * 14 13 10 16 16 C 1.46902 * 110.99991 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.46634 * 179.97438 * 16 15 14 18 18 O 1.21290 * 120.00433 * 0.02562 * 17 16 15 19 19 N 1.34784 * 119.99606 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99854 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99806 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00039 * 180.02562 * 20 19 17 23 23 N 1.31412 * 119.99781 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00199 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47221 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47184 * 119.99942 * 24 22 20 27 27 H 1.48494 * 109.47278 * 240.00072 * 24 22 20 28 28 O 1.34364 * 107.43764 * 359.97438 * 5 4 3 29 29 H 1.08997 * 109.47444 * 90.01974 * 1 2 3 30 30 H 1.09002 * 109.46698 * 210.02579 * 1 2 3 31 31 H 1.09002 * 109.47090 * 330.01523 * 1 2 3 32 32 H 1.09006 * 109.47243 * 209.97514 * 6 5 4 33 33 H 1.09004 * 109.47210 * 329.97528 * 6 5 4 34 34 H 0.97002 * 119.99798 * 359.97438 * 9 7 6 35 35 H 1.09007 * 109.47678 * 59.99544 * 12 10 9 36 36 H 1.09000 * 109.46963 * 179.97438 * 12 10 9 37 37 H 1.09006 * 109.47026 * 299.99795 * 12 10 9 38 38 H 1.09003 * 109.46420 * 185.00193 * 13 10 9 39 39 H 1.08994 * 109.47292 * 305.00390 * 13 10 9 40 40 H 1.09007 * 109.46951 * 299.99550 * 14 13 10 41 41 H 1.09005 * 109.47526 * 59.99271 * 14 13 10 42 42 H 1.00894 * 110.99400 * 303.95384 * 15 14 13 43 43 H 1.08995 * 109.47303 * 299.99791 * 16 15 14 44 44 H 1.08993 * 109.46933 * 60.00142 * 16 15 14 45 45 H 0.96997 * 119.99957 * 359.97438 * 19 17 16 46 46 H 0.97001 * 119.99504 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6760 0.0005 5 6 3.5654 -0.6255 0.0004 6 6 4.8176 -1.4639 0.0014 7 6 5.2342 -1.7431 1.4225 8 8 4.5783 -1.3048 2.3438 9 7 6.3347 -2.4806 1.6696 10 6 6.7399 -2.7515 3.0512 11 1 6.5091 -1.8870 3.6737 12 6 5.9825 -3.9735 3.5745 13 6 8.2444 -3.0260 3.0969 14 6 9.0059 -1.7622 2.6924 15 7 10.4505 -2.0255 2.7368 16 6 11.2153 -0.8315 2.3528 17 6 12.6894 -1.1392 2.4107 18 8 13.0658 -2.2445 2.7391 19 7 13.5895 -0.1861 2.0976 20 6 14.9305 -0.4661 2.1498 21 1 15.2657 -1.4503 2.4422 22 6 15.8585 0.5165 1.8276 23 7 15.4507 1.7142 1.4723 24 14 17.6857 0.1352 1.8994 25 1 17.8810 -1.2744 2.3238 26 1 18.2862 0.3348 0.5559 27 1 18.3427 1.0419 2.8748 28 8 2.3021 -1.0832 0.0002 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3633 0.8901 0.5136 32 1 4.6248 -2.4057 -0.5124 33 1 5.6151 -0.9265 -0.5120 34 1 6.8586 -2.8320 0.9328 35 1 6.2132 -4.8381 2.9519 36 1 6.2842 -4.1754 4.6022 37 1 4.9106 -3.7780 3.5418 38 1 8.5305 -3.3144 4.1085 39 1 8.4876 -3.8335 2.4064 40 1 8.7198 -1.4738 1.6808 41 1 8.7627 -0.9546 3.3829 42 1 10.7297 -2.3566 3.6480 43 1 10.9447 -0.5373 1.3388 44 1 10.9871 -0.0173 3.0405 45 1 13.2884 0.6977 1.8347 46 1 16.0985 2.4001 1.2470 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568627582.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:48 Heat of formation + Delta-G solvation = -77.819746 kcal Electronic energy + Delta-G solvation = -27982.664399 eV Core-core repulsion = 23714.672847 eV Total energy + Delta-G solvation = -4267.991552 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.30552 -41.02419 -40.14661 -38.03041 -37.27091 -36.31612 -35.70066 -34.69120 -33.30008 -33.02285 -31.48172 -30.25361 -28.26137 -27.78055 -25.80856 -24.42690 -23.63153 -23.25152 -22.18994 -21.58608 -21.05299 -19.90715 -18.95354 -18.27796 -17.93187 -17.76961 -17.42132 -17.01951 -16.53525 -16.40924 -15.99780 -15.89061 -15.54938 -15.33572 -15.17315 -14.92562 -14.72784 -14.36870 -13.99040 -13.88345 -13.73904 -13.57461 -13.50032 -13.49576 -13.34794 -13.16120 -12.97499 -12.93158 -12.79418 -12.40897 -12.21765 -12.11285 -12.10020 -12.03078 -11.76865 -11.51082 -11.23685 -10.54039 -10.35439 -10.17418 -10.01586 -9.34390 -8.46676 -5.95642 0.05348 1.15143 1.27621 1.37240 1.42663 1.47559 1.56950 2.05049 2.15048 2.29416 2.78859 2.89197 3.20699 3.37599 3.48945 3.63461 3.81774 3.95873 4.04024 4.11715 4.11934 4.32960 4.33630 4.40617 4.44376 4.49653 4.54392 4.55500 4.56927 4.63287 4.70158 4.70517 4.83864 4.91994 5.03086 5.06946 5.22009 5.32142 5.41375 5.49554 5.88715 6.09851 6.39874 6.45666 6.59784 7.12571 7.13737 7.19822 7.56205 8.11014 8.70912 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017072 B = 0.001660 C = 0.001537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.748908 B =16862.850559 C =18212.996420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.171 3.829 3 N -0.334 5.334 4 N -0.315 5.315 5 C 0.181 3.819 6 C -0.043 4.043 7 C 0.520 3.480 8 O -0.584 6.584 9 N -0.702 5.702 10 C 0.149 3.851 11 H 0.067 0.933 12 C -0.156 4.156 13 C -0.113 4.113 14 C 0.059 3.941 15 N -0.678 5.678 16 C 0.064 3.936 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.080 0.920 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.272 1.272 28 O -0.227 6.227 29 H 0.124 0.876 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.173 0.827 33 H 0.168 0.832 34 H 0.421 0.579 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.043 0.957 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.024 0.976 42 H 0.344 0.656 43 H 0.105 0.895 44 H 0.060 0.940 45 H 0.396 0.604 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.875 -8.696 -4.706 31.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.040 4.040 3 N -0.181 5.181 4 N -0.160 5.160 5 C -0.032 4.032 6 C -0.084 4.084 7 C 0.305 3.695 8 O -0.464 6.464 9 N -0.355 5.355 10 C 0.044 3.956 11 H 0.085 0.915 12 C -0.215 4.215 13 C -0.151 4.151 14 C -0.069 4.069 15 N -0.310 5.310 16 C -0.069 4.069 17 C 0.225 3.775 18 O -0.508 6.508 19 N -0.211 5.211 20 C -0.464 4.464 21 H 0.098 0.902 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.818 3.182 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.197 1.197 28 O -0.107 6.107 29 H 0.143 0.857 30 H 0.131 0.869 31 H 0.134 0.866 32 H 0.190 0.810 33 H 0.186 0.814 34 H 0.260 0.740 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.043 0.957 42 H 0.162 0.838 43 H 0.123 0.877 44 H 0.078 0.922 45 H 0.230 0.770 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -29.575 -7.973 -4.516 30.962 hybrid contribution 0.707 0.003 0.557 0.900 sum -28.869 -7.970 -3.959 30.209 Atomic orbital electron populations 1.20735 0.76434 1.07192 1.07186 1.29076 0.99497 0.78730 0.96680 1.74316 0.96391 1.27308 1.20055 1.74277 1.13104 1.10628 1.18012 1.27553 0.85824 0.91122 0.98706 1.20399 0.89250 1.02554 0.96150 1.20440 0.80858 0.77581 0.90596 1.90769 1.54894 1.52986 1.47740 1.45899 1.27043 1.52834 1.09760 1.20885 0.93718 0.98453 0.82527 0.91511 1.22099 0.99554 0.97497 1.02311 1.21773 0.91427 0.97943 1.03985 1.22069 0.86049 0.97102 1.01719 1.60118 1.04047 1.31050 1.35826 1.21531 0.89393 0.92834 1.03102 1.20876 0.89142 0.84987 0.82460 1.90486 1.81879 1.24444 1.54034 1.41958 1.05761 1.13229 1.60178 1.19725 0.82491 0.99029 1.45120 0.90190 1.26056 1.04657 0.94537 0.96075 1.69685 1.36962 1.03621 1.45937 0.84853 0.76784 0.78291 0.78298 1.19659 1.19611 1.19710 1.84762 1.17484 1.38600 1.69852 0.85745 0.86860 0.86608 0.81003 0.81432 0.74034 0.90647 0.90768 0.93781 0.89792 0.89088 0.89974 0.95740 0.83760 0.87670 0.92217 0.77030 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.34 10.51 71.24 0.75 0.40 16 2 C 0.17 3.16 8.48 88.34 0.75 3.91 16 3 N -0.33 -8.74 12.22 -165.50 -2.02 -10.77 16 4 N -0.31 -8.59 12.22 -165.50 -2.02 -10.61 16 5 C 0.18 3.69 6.97 88.34 0.62 4.31 16 6 C -0.04 -0.45 6.33 29.10 0.18 -0.26 16 7 C 0.52 8.70 7.79 87.66 0.68 9.38 16 8 O -0.58 -16.20 15.70 -3.06 -0.05 -16.24 16 9 N -0.70 -8.19 4.53 -442.53 -2.00 -10.20 16 10 C 0.15 2.20 2.57 44.99 0.12 2.32 16 11 H 0.07 1.34 7.58 -2.39 -0.02 1.33 16 12 C -0.16 -2.07 9.48 71.98 0.68 -1.38 16 13 C -0.11 -1.70 5.01 30.60 0.15 -1.54 16 14 C 0.06 1.20 5.57 86.30 0.48 1.68 16 15 N -0.68 -19.68 6.13 -517.93 -3.17 -22.85 16 16 C 0.06 2.13 6.17 85.56 0.53 2.66 16 17 C 0.44 20.59 7.82 87.66 0.69 21.28 16 18 O -0.62 -33.95 15.78 -3.06 -0.05 -34.00 16 19 N -0.57 -29.40 5.29 -306.98 -1.62 -31.03 16 20 C -0.33 -18.96 9.68 84.04 0.81 -18.14 16 21 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 22 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 23 N -0.92 -49.82 13.05 21.66 0.28 -49.54 16 24 Si 0.99 42.81 29.55 68.60 2.03 44.84 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 28 O -0.23 -4.41 10.87 -3.71 -0.04 -4.45 16 29 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.17 0.24 8.14 -2.38 -0.02 0.22 16 33 H 0.17 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.42 2.28 8.60 -92.71 -0.80 1.49 16 35 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.08 1.48 7.75 -2.38 -0.02 1.46 16 41 H 0.02 0.52 8.14 -2.38 -0.02 0.50 16 42 H 0.34 10.60 8.43 -89.70 -0.76 9.84 16 43 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 44 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.40 19.33 7.90 -92.71 -0.73 18.60 16 46 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -86.53 400.13 -3.01 -89.54 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: -1.25 Total: 30.94 kcal Atomic # 6 Polarization: 17.45 SS G_CDS: 6.91 Total: 24.36 kcal Atomic # 7 Polarization: -124.42 SS G_CDS: -10.56 Total: -134.99 kcal Atomic # 8 Polarization: -54.56 SS G_CDS: -0.14 Total: -54.70 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -86.53 -3.01 -89.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568627582.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.724 kcal (2) G-P(sol) polarization free energy of solvation -86.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds