Wall clock time and date at job start Tue Mar 31 2020 22:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29400 * 125.58597 * 2 1 4 4 N 1.40173 * 108.13775 * 179.97438 * 3 2 1 5 5 C 1.46498 * 126.34649 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47009 * 270.02878 * 5 4 3 7 7 O 1.21274 * 120.00072 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99816 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00072 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47282 * 179.97438 * 9 8 6 11 11 O 1.42901 * 110.64338 * 298.31527 * 10 9 8 12 12 C 1.55154 * 110.71880 * 174.97661 * 10 9 8 13 13 C 1.54910 * 101.58031 * 206.13651 * 12 10 9 14 14 N 1.47426 * 104.83209 * 37.01037 * 13 12 10 15 15 C 1.36937 * 125.64487 * 155.84912 * 14 13 12 16 16 H 1.08001 * 119.99600 * 180.02562 * 15 14 13 17 17 C 1.38807 * 120.00345 * 0.02772 * 15 14 13 18 18 N 1.31623 * 120.00215 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99940 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47596 * 89.99890 * 19 17 15 21 21 H 1.48507 * 109.46905 * 210.00085 * 19 17 15 22 22 H 1.48500 * 109.47159 * 329.99420 * 19 17 15 23 23 C 1.47019 * 108.70209 * 335.87354 * 14 13 12 24 24 C 1.34939 * 107.30412 * 0.26507 * 4 3 2 25 25 O 1.21802 * 126.30511 * 179.72020 * 24 4 3 26 26 N 1.34826 * 107.39100 * 359.57830 * 24 4 3 27 27 C 1.46501 * 125.82750 * 180.14051 * 26 24 4 28 28 H 1.08997 * 109.47545 * 0.02779 * 1 2 3 29 29 H 1.09009 * 109.47182 * 120.02449 * 1 2 3 30 30 H 1.08997 * 109.47882 * 240.02004 * 1 2 3 31 31 H 1.08998 * 109.47254 * 150.02335 * 5 4 3 32 32 H 1.09002 * 109.47380 * 30.02515 * 5 4 3 33 33 H 0.97006 * 120.00120 * 359.97438 * 8 6 5 34 34 H 1.09000 * 109.46837 * 59.99936 * 9 8 6 35 35 H 1.09000 * 109.47332 * 300.00307 * 9 8 6 36 36 H 0.96694 * 114.00195 * 61.68414 * 11 10 9 37 37 H 1.09002 * 111.00945 * 88.06458 * 12 10 9 38 38 H 1.08999 * 111.00353 * 324.20996 * 12 10 9 39 39 H 1.08998 * 110.36709 * 278.17139 * 13 12 10 40 40 H 1.09005 * 110.36466 * 155.84673 * 13 12 10 41 41 H 0.96993 * 120.00387 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.88389 * 120.48020 * 23 14 13 43 43 H 1.09004 * 109.87600 * 241.48978 * 23 14 13 44 44 H 1.09002 * 109.47128 * 270.32967 * 27 26 24 45 45 H 1.09001 * 109.47476 * 30.33319 * 27 26 24 46 46 H 1.09002 * 109.46896 * 150.33531 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2600 1.0523 0.0000 4 7 3.5972 0.6320 0.0006 5 6 4.7793 1.4974 0.0013 6 6 5.1849 1.7949 -1.4193 7 8 4.5495 1.3295 -2.3415 8 7 6.2545 2.5773 -1.6649 9 6 6.6492 2.8661 -3.0458 10 6 7.8837 3.7700 -3.0451 11 8 7.5944 5.0173 -2.4106 12 6 8.4023 3.9920 -4.4904 13 6 9.9026 4.2859 -4.2407 14 7 10.2807 3.3982 -3.1260 15 6 11.5469 2.9535 -2.8542 16 1 11.7211 2.3026 -2.0101 17 6 12.6067 3.3392 -3.6634 18 7 12.3945 4.1321 -4.6924 19 14 14.3340 2.7319 -3.2929 20 1 14.5744 1.4547 -4.0114 21 1 15.3220 3.7458 -3.7415 22 1 14.4787 2.5125 -1.8314 23 6 9.0729 3.0692 -2.3550 24 6 3.5938 -0.7173 -0.0050 25 8 4.5736 -1.4410 -0.0111 26 7 2.3062 -1.1171 0.0005 27 6 1.8394 -2.5058 0.0003 28 1 -0.3634 1.0276 -0.0005 29 1 -0.3634 -0.5143 -0.8898 30 1 -0.3635 -0.5135 0.8901 31 1 5.5981 0.9936 0.5151 32 1 4.5467 2.4299 0.5156 33 1 6.7630 2.9493 -0.9273 34 1 5.8307 3.3701 -3.5598 35 1 6.8815 1.9335 -3.5599 36 1 7.3392 4.9362 -1.4815 37 1 7.9092 4.8455 -4.9557 38 1 8.2754 3.0930 -5.0935 39 1 10.0430 5.3295 -3.9590 40 1 10.4884 4.0498 -5.1291 41 1 13.1350 4.4013 -5.2581 42 1 8.9170 1.9904 -2.3526 43 1 9.1763 3.4309 -1.3319 44 1 1.7243 -2.8502 -1.0275 45 1 2.5669 -3.1338 0.5146 46 1 0.8797 -2.5665 0.5135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569762119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:20 Heat of formation + Delta-G solvation = -0.431850 kcal Electronic energy + Delta-G solvation = -29707.564875 eV Core-core repulsion = 25442.929114 eV Total energy + Delta-G solvation = -4264.635761 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.69904 -39.94584 -38.48800 -37.55514 -35.67058 -35.14269 -34.21252 -32.62747 -32.11264 -30.91554 -29.57718 -28.34284 -27.69772 -26.65242 -25.46795 -23.53393 -22.10373 -21.36366 -20.89504 -20.07397 -19.92320 -18.16172 -17.72045 -16.95709 -16.89906 -16.42940 -16.07296 -15.96148 -15.50468 -15.22542 -14.74240 -14.35181 -14.31366 -14.21313 -13.98972 -13.80873 -13.54822 -13.40314 -13.19912 -13.02703 -12.93149 -12.63708 -12.22566 -12.16241 -12.11937 -12.05975 -11.58982 -11.04110 -10.87337 -10.76849 -10.73447 -10.48627 -10.35986 -10.15050 -10.08930 -9.79819 -9.72436 -9.42507 -9.14315 -8.72341 -8.65598 -6.86570 -5.66765 -3.09226 1.40234 1.62704 2.43004 2.47426 2.67128 3.13010 3.39854 3.44519 3.46619 3.99793 4.22889 4.41776 4.46225 4.53545 4.54921 4.70240 4.78932 4.83475 4.88556 4.90529 5.09333 5.17604 5.22489 5.30700 5.39466 5.49075 5.54857 5.62241 5.78596 5.87237 5.96602 6.22390 6.23276 6.27752 6.40508 6.48861 6.59292 6.61777 7.30264 7.36449 7.55392 7.60348 7.80774 7.83427 7.91778 8.06488 8.33696 9.19685 9.80066 10.44162 11.37027 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021051 B = 0.002220 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.800562 B =12612.132582 C =13443.219141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.274 3.726 3 N -0.272 5.272 4 N -0.437 5.437 5 C 0.143 3.857 6 C 0.497 3.503 7 O -0.527 6.527 8 N -0.722 5.722 9 C 0.107 3.893 10 C 0.106 3.894 11 O -0.542 6.542 12 C -0.128 4.128 13 C 0.156 3.844 14 N -0.600 5.600 15 C -0.225 4.225 16 H 0.077 0.923 17 C -0.010 4.010 18 N -0.921 5.921 19 Si 0.916 3.084 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.115 3.885 24 C 0.654 3.346 25 O -0.549 6.549 26 N -0.558 5.558 27 C 0.098 3.902 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.400 0.600 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.364 0.636 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.019 0.981 40 H 0.108 0.892 41 H 0.253 0.747 42 H 0.031 0.969 43 H 0.024 0.976 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.521 -7.288 11.826 29.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.004 4.004 3 N -0.095 5.095 4 N -0.257 5.257 5 C 0.017 3.983 6 C 0.281 3.719 7 O -0.402 6.402 8 N -0.376 5.376 9 C -0.017 4.017 10 C 0.064 3.936 11 O -0.347 6.347 12 C -0.167 4.167 13 C 0.031 3.969 14 N -0.326 5.326 15 C -0.353 4.353 16 H 0.095 0.905 17 C -0.206 4.206 18 N -0.569 5.569 19 Si 0.747 3.253 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.207 1.207 23 C -0.011 4.011 24 C 0.353 3.647 25 O -0.422 6.422 26 N -0.288 5.288 27 C -0.044 4.044 28 H 0.119 0.881 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.234 0.766 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.210 0.790 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.037 0.963 40 H 0.126 0.874 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.041 0.959 44 H 0.092 0.908 45 H 0.107 0.893 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -25.794 -6.859 10.467 28.669 hybrid contribution 1.097 -1.081 1.066 1.873 sum -24.697 -7.940 11.533 28.390 Atomic orbital electron populations 1.20426 0.82869 1.05939 1.04206 1.24176 0.96474 0.81946 0.97821 1.76982 0.87394 1.21039 1.24057 1.48150 1.03701 1.04732 1.69072 1.21228 0.85214 0.96260 0.95565 1.20861 0.80654 0.78797 0.91584 1.90732 1.53021 1.50636 1.45817 1.45885 1.30405 1.51612 1.09656 1.22098 0.97407 1.00053 0.82150 1.22557 0.91357 0.83108 0.96529 1.86630 1.90515 1.29901 1.27630 1.23053 1.00478 1.01543 0.91621 1.21948 0.88078 0.92682 0.94168 1.44415 1.02229 1.55967 1.29986 1.19058 0.82468 1.23892 1.09912 0.90506 1.24805 0.98206 0.99731 0.97861 1.69789 1.29945 1.38743 1.18411 0.86051 0.83840 0.77840 0.77605 1.21539 1.21605 1.20742 1.21938 0.87708 0.96909 0.94575 1.16625 0.83641 0.83226 0.81174 1.91102 1.34778 1.57925 1.58393 1.45788 1.06597 1.08342 1.68037 1.21812 1.01185 0.77719 1.03676 0.88137 0.89002 0.89090 0.85535 0.85531 0.76564 0.90686 0.90291 0.78984 0.91040 0.90594 0.96328 0.87405 0.93635 0.95125 0.95861 0.90816 0.89275 0.89394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.23 9.85 36.00 0.35 0.12 16 2 C 0.27 2.37 7.98 -154.16 -1.23 1.14 16 3 N -0.27 -3.14 12.53 32.97 0.41 -2.73 16 4 N -0.44 -5.71 3.11 -66.31 -0.21 -5.91 16 5 C 0.14 1.52 6.87 -5.19 -0.04 1.48 16 6 C 0.50 6.91 7.90 -10.98 -0.09 6.82 16 7 O -0.53 -9.73 16.43 5.56 0.09 -9.63 16 8 N -0.72 -8.93 5.17 -60.30 -0.31 -9.24 16 9 C 0.11 1.61 4.73 -4.04 -0.02 1.59 16 10 C 0.11 1.82 0.92 -88.79 -0.08 1.74 16 11 O -0.54 -8.85 13.10 -35.23 -0.46 -9.31 16 12 C -0.13 -2.49 6.26 -24.58 -0.15 -2.64 16 13 C 0.16 3.86 5.88 -2.53 -0.01 3.84 16 14 N -0.60 -15.43 3.39 -170.07 -0.58 -16.01 16 15 C -0.23 -6.32 10.27 -15.06 -0.15 -6.47 16 16 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 17 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 18 N -0.92 -27.04 10.09 55.49 0.56 -26.48 16 19 Si 0.92 22.25 29.55 -169.99 -5.02 17.23 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C 0.12 2.33 6.02 -3.07 -0.02 2.31 16 24 C 0.65 9.36 8.60 -86.73 -0.75 8.61 16 25 O -0.55 -9.64 17.72 5.10 0.09 -9.55 16 26 N -0.56 -5.61 3.14 -125.41 -0.39 -6.01 16 27 C 0.10 0.55 10.85 59.85 0.65 1.20 16 28 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.16 8.14 -51.92 -0.42 -0.26 16 30 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 31 H 0.13 1.15 8.11 -51.93 -0.42 0.73 16 32 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.40 3.78 7.38 -40.82 -0.30 3.47 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.08 1.31 8.13 -51.93 -0.42 0.89 16 36 H 0.36 4.27 8.12 45.56 0.37 4.64 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.08 1.41 8.04 -51.93 -0.42 1.00 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.11 2.97 5.87 -51.93 -0.30 2.67 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.03 0.63 7.82 -51.93 -0.41 0.22 16 43 H 0.02 0.45 8.06 -51.93 -0.42 0.03 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 0.55 8.08 -51.93 -0.42 0.13 16 46 H 0.09 0.16 7.79 -51.93 -0.40 -0.25 16 LS Contribution 385.88 15.07 5.82 5.82 Total: -1.00 -40.89 385.88 -7.71 -48.61 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.07 Total: 3.86 kcal Atomic # 6 Polarization: 21.00 SS G_CDS: -1.63 Total: 19.37 kcal Atomic # 7 Polarization: -65.86 SS G_CDS: -0.52 Total: -66.38 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.28 Total: -28.50 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -40.89 -7.71 -48.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569762119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.176 kcal (2) G-P(sol) polarization free energy of solvation -40.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds