Wall clock time and date at job start Tue Mar 31 2020 22:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29400 * 125.58597 * 2 1 4 4 N 1.40173 * 108.13775 * 179.97438 * 3 2 1 5 5 C 1.46498 * 126.34649 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47009 * 270.02878 * 5 4 3 7 7 O 1.21274 * 120.00072 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99816 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00072 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47282 * 179.97438 * 9 8 6 11 11 O 1.42901 * 110.64338 * 298.31527 * 10 9 8 12 12 C 1.55154 * 110.71880 * 174.97661 * 10 9 8 13 13 C 1.54910 * 101.58031 * 206.13651 * 12 10 9 14 14 N 1.47426 * 104.83209 * 37.01037 * 13 12 10 15 15 C 1.36937 * 125.64487 * 155.84912 * 14 13 12 16 16 H 1.08001 * 119.99600 * 180.02562 * 15 14 13 17 17 C 1.38807 * 120.00345 * 0.02772 * 15 14 13 18 18 N 1.31623 * 120.00215 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99940 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47596 * 89.99890 * 19 17 15 21 21 H 1.48507 * 109.46905 * 210.00085 * 19 17 15 22 22 H 1.48500 * 109.47159 * 329.99420 * 19 17 15 23 23 C 1.47019 * 108.70209 * 335.87354 * 14 13 12 24 24 C 1.34939 * 107.30412 * 0.26507 * 4 3 2 25 25 O 1.21802 * 126.30511 * 179.72020 * 24 4 3 26 26 N 1.34826 * 107.39100 * 359.57830 * 24 4 3 27 27 C 1.46501 * 125.82750 * 180.14051 * 26 24 4 28 28 H 1.08997 * 109.47545 * 0.02779 * 1 2 3 29 29 H 1.09009 * 109.47182 * 120.02449 * 1 2 3 30 30 H 1.08997 * 109.47882 * 240.02004 * 1 2 3 31 31 H 1.08998 * 109.47254 * 150.02335 * 5 4 3 32 32 H 1.09002 * 109.47380 * 30.02515 * 5 4 3 33 33 H 0.97006 * 120.00120 * 359.97438 * 8 6 5 34 34 H 1.09000 * 109.46837 * 59.99936 * 9 8 6 35 35 H 1.09000 * 109.47332 * 300.00307 * 9 8 6 36 36 H 0.96694 * 114.00195 * 61.68414 * 11 10 9 37 37 H 1.09002 * 111.00945 * 88.06458 * 12 10 9 38 38 H 1.08999 * 111.00353 * 324.20996 * 12 10 9 39 39 H 1.08998 * 110.36709 * 278.17139 * 13 12 10 40 40 H 1.09005 * 110.36466 * 155.84673 * 13 12 10 41 41 H 0.96993 * 120.00387 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.88389 * 120.48020 * 23 14 13 43 43 H 1.09004 * 109.87600 * 241.48978 * 23 14 13 44 44 H 1.09002 * 109.47128 * 270.32967 * 27 26 24 45 45 H 1.09001 * 109.47476 * 30.33319 * 27 26 24 46 46 H 1.09002 * 109.46896 * 150.33531 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2600 1.0523 0.0000 4 7 3.5972 0.6320 0.0006 5 6 4.7793 1.4974 0.0013 6 6 5.1849 1.7949 -1.4193 7 8 4.5495 1.3295 -2.3415 8 7 6.2545 2.5773 -1.6649 9 6 6.6492 2.8661 -3.0458 10 6 7.8837 3.7700 -3.0451 11 8 7.5944 5.0173 -2.4106 12 6 8.4023 3.9920 -4.4904 13 6 9.9026 4.2859 -4.2407 14 7 10.2807 3.3982 -3.1260 15 6 11.5469 2.9535 -2.8542 16 1 11.7211 2.3026 -2.0101 17 6 12.6067 3.3392 -3.6634 18 7 12.3945 4.1321 -4.6924 19 14 14.3340 2.7319 -3.2929 20 1 14.5744 1.4547 -4.0114 21 1 15.3220 3.7458 -3.7415 22 1 14.4787 2.5125 -1.8314 23 6 9.0729 3.0692 -2.3550 24 6 3.5938 -0.7173 -0.0050 25 8 4.5736 -1.4410 -0.0111 26 7 2.3062 -1.1171 0.0005 27 6 1.8394 -2.5058 0.0003 28 1 -0.3634 1.0276 -0.0005 29 1 -0.3634 -0.5143 -0.8898 30 1 -0.3635 -0.5135 0.8901 31 1 5.5981 0.9936 0.5151 32 1 4.5467 2.4299 0.5156 33 1 6.7630 2.9493 -0.9273 34 1 5.8307 3.3701 -3.5598 35 1 6.8815 1.9335 -3.5599 36 1 7.3392 4.9362 -1.4815 37 1 7.9092 4.8455 -4.9557 38 1 8.2754 3.0930 -5.0935 39 1 10.0430 5.3295 -3.9590 40 1 10.4884 4.0498 -5.1291 41 1 13.1350 4.4013 -5.2581 42 1 8.9170 1.9904 -2.3526 43 1 9.1763 3.4309 -1.3319 44 1 1.7243 -2.8502 -1.0275 45 1 2.5669 -3.1338 0.5146 46 1 0.8797 -2.5665 0.5135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569762119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:19 Heat of formation + Delta-G solvation = -33.704467 kcal Electronic energy + Delta-G solvation = -29709.007684 eV Core-core repulsion = 25442.929114 eV Total energy + Delta-G solvation = -4266.078570 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.51094 -41.16588 -39.92483 -38.57563 -36.88646 -36.39796 -35.43514 -34.02750 -33.32597 -31.77414 -31.17864 -29.75935 -28.32857 -27.82933 -26.96653 -25.13477 -23.04169 -22.38938 -22.05234 -21.55747 -21.37962 -19.25786 -18.90064 -18.54369 -17.93686 -17.46400 -17.13597 -16.97623 -16.77248 -16.54481 -16.30121 -15.80088 -15.60272 -15.17246 -14.97219 -14.88940 -14.63709 -14.46908 -14.18671 -13.97090 -13.90938 -13.61040 -13.36908 -13.32532 -13.12565 -12.94726 -12.92701 -12.88586 -12.77630 -12.38881 -12.09631 -12.04820 -11.83792 -11.69345 -11.53083 -11.44567 -10.99952 -10.80093 -10.75587 -10.30549 -9.62511 -8.92877 -7.79777 -5.24910 0.61982 0.94974 1.40598 1.45415 1.47332 1.47610 1.56018 1.93388 2.17462 2.47090 3.12430 3.29622 3.34282 3.38465 3.57457 3.68880 3.76921 3.88783 3.92517 4.03693 4.11052 4.21644 4.42982 4.43735 4.56933 4.61935 4.70277 4.76223 4.76504 4.83297 4.84209 4.90957 4.95313 4.95926 5.05025 5.08592 5.20094 5.44092 5.58987 5.63534 5.77257 6.26867 6.30438 6.57090 6.78637 6.86435 7.02971 7.07305 7.74167 8.37684 9.22302 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021051 B = 0.002220 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.800562 B =12612.132582 C =13443.219141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.286 3.714 3 N -0.306 5.306 4 N -0.445 5.445 5 C 0.141 3.859 6 C 0.497 3.503 7 O -0.577 6.577 8 N -0.709 5.709 9 C 0.122 3.878 10 C 0.129 3.871 11 O -0.551 6.551 12 C -0.121 4.121 13 C 0.160 3.840 14 N -0.623 5.623 15 C -0.240 4.240 16 H 0.082 0.918 17 C -0.069 4.069 18 N -0.949 5.949 19 Si 0.982 3.018 20 H -0.286 1.286 21 H -0.293 1.293 22 H -0.269 1.269 23 C 0.111 3.889 24 C 0.632 3.368 25 O -0.598 6.598 26 N -0.556 5.556 27 C 0.088 3.912 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.123 0.877 31 H 0.140 0.860 32 H 0.166 0.834 33 H 0.417 0.583 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.387 0.613 37 H 0.087 0.913 38 H 0.083 0.917 39 H -0.012 1.012 40 H 0.075 0.925 41 H 0.248 0.752 42 H 0.032 0.968 43 H 0.041 0.959 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.089 -7.766 13.753 33.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.008 3.992 3 N -0.129 5.129 4 N -0.263 5.263 5 C 0.016 3.984 6 C 0.283 3.717 7 O -0.455 6.455 8 N -0.363 5.363 9 C -0.003 4.003 10 C 0.087 3.913 11 O -0.359 6.359 12 C -0.160 4.160 13 C 0.035 3.965 14 N -0.350 5.350 15 C -0.369 4.369 16 H 0.100 0.900 17 C -0.261 4.261 18 N -0.598 5.598 19 Si 0.810 3.190 20 H -0.213 1.213 21 H -0.220 1.220 22 H -0.194 1.194 23 C -0.014 4.014 24 C 0.331 3.669 25 O -0.475 6.475 26 N -0.284 5.284 27 C -0.052 4.052 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.141 0.859 31 H 0.158 0.842 32 H 0.183 0.817 33 H 0.254 0.746 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.236 0.764 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.006 0.994 40 H 0.093 0.907 41 H 0.057 0.943 42 H 0.050 0.950 43 H 0.059 0.941 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -28.420 -7.326 12.462 31.885 hybrid contribution 1.786 -0.937 0.507 2.080 sum -26.634 -8.262 12.970 30.754 Atomic orbital electron populations 1.20772 0.78687 1.07200 1.06581 1.25296 0.98348 0.80719 0.94800 1.77001 0.86775 1.22322 1.26807 1.48389 1.04870 1.04567 1.68516 1.21479 0.85461 0.97993 0.93459 1.21450 0.79983 0.77741 0.92496 1.90708 1.54700 1.52567 1.47566 1.45702 1.30201 1.51222 1.09128 1.21744 0.96261 0.98706 0.83597 1.22135 0.91023 0.83506 0.94612 1.86596 1.90482 1.29180 1.29592 1.22903 0.96889 1.02545 0.93671 1.21658 0.91192 0.90910 0.92747 1.44702 1.03147 1.55976 1.31127 1.19451 0.83864 1.23685 1.09895 0.89979 1.25675 1.02056 1.00370 0.98005 1.70046 1.30522 1.39982 1.19297 0.85024 0.79049 0.76969 0.77939 1.21279 1.21982 1.19387 1.22150 0.86918 0.97314 0.95057 1.17056 0.84592 0.83678 0.81581 1.91039 1.36595 1.59073 1.60769 1.46068 1.05438 1.10200 1.66714 1.22182 1.02904 0.75464 1.04634 0.87476 0.87078 0.85879 0.84219 0.81666 0.74595 0.90333 0.91831 0.76374 0.89425 0.89896 0.99403 0.90744 0.94258 0.94981 0.94131 0.90288 0.90369 0.84766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.17 9.85 71.23 0.70 0.53 16 2 C 0.29 4.32 7.98 137.69 1.10 5.42 16 3 N -0.31 -6.63 12.53 -49.60 -0.62 -7.25 16 4 N -0.45 -11.29 3.11 -481.78 -1.50 -12.79 16 5 C 0.14 2.80 6.87 85.63 0.59 3.39 16 6 C 0.50 13.31 7.90 87.66 0.69 14.01 16 7 O -0.58 -21.26 16.43 -3.01 -0.05 -21.31 16 8 N -0.71 -16.23 5.17 -463.07 -2.40 -18.63 16 9 C 0.12 3.50 4.73 86.38 0.41 3.91 16 10 C 0.13 4.25 0.92 -9.61 -0.01 4.25 16 11 O -0.55 -16.76 13.10 -148.98 -1.95 -18.71 16 12 C -0.12 -4.68 6.26 31.99 0.20 -4.48 16 13 C 0.16 8.14 5.88 86.86 0.51 8.65 16 14 N -0.62 -32.39 3.39 -691.99 -2.35 -34.74 16 15 C -0.24 -13.60 10.27 84.03 0.86 -12.74 16 16 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 17 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 18 N -0.95 -57.53 10.09 21.65 0.22 -57.31 16 19 Si 0.98 46.29 29.55 68.60 2.03 48.32 16 20 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 21 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 C 0.11 4.38 6.02 86.73 0.52 4.90 16 24 C 0.63 18.08 8.60 178.99 1.54 19.62 16 25 O -0.60 -21.61 17.72 -4.68 -0.08 -21.70 16 26 N -0.56 -10.45 3.14 -668.82 -2.10 -12.55 16 27 C 0.09 0.82 10.85 127.77 1.39 2.21 16 28 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.11 -0.08 8.14 -2.38 -0.02 -0.09 16 30 H 0.12 -0.43 8.14 -2.39 -0.02 -0.45 16 31 H 0.14 2.37 8.11 -2.39 -0.02 2.35 16 32 H 0.17 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.42 6.74 7.38 -92.70 -0.68 6.06 16 34 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.06 2.07 8.13 -2.39 -0.02 2.05 16 36 H 0.39 7.85 8.12 -74.06 -0.60 7.25 16 37 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 38 H 0.08 3.08 8.04 -2.39 -0.02 3.06 16 39 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 40 H 0.07 4.29 5.87 -2.38 -0.01 4.28 16 41 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 42 H 0.03 1.27 7.82 -2.39 -0.02 1.26 16 43 H 0.04 1.48 8.06 -2.38 -0.02 1.46 16 44 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 46 H 0.13 -0.05 7.79 -2.39 -0.02 -0.07 16 Total: -1.00 -93.82 385.88 -0.10 -93.92 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -0.26 Total: 16.56 kcal Atomic # 6 Polarization: 37.22 SS G_CDS: 8.97 Total: 46.19 kcal Atomic # 7 Polarization: -134.52 SS G_CDS: -8.75 Total: -143.27 kcal Atomic # 8 Polarization: -59.63 SS G_CDS: -2.08 Total: -61.71 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -93.82 -0.10 -93.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569762119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.211 kcal (2) G-P(sol) polarization free energy of solvation -93.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds