Wall clock time and date at job start Tue Mar 31 2020 22:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29402 * 125.58538 * 2 1 4 4 N 1.40168 * 108.14087 * 180.14145 * 3 2 1 5 5 C 1.46503 * 126.35058 * 179.88228 * 4 3 2 6 6 C 1.50705 * 109.46885 * 269.68605 * 5 4 3 7 7 O 1.21283 * 119.99503 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99794 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99683 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.46905 * 179.97438 * 9 8 6 11 11 O 1.42907 * 110.88261 * 67.42627 * 10 9 8 12 12 C 1.55155 * 111.00233 * 191.34860 * 10 9 8 13 13 C 1.54337 * 103.02124 * 153.38273 * 12 10 9 14 14 N 1.47022 * 107.26372 * 338.14006 * 13 12 10 15 15 C 1.36932 * 125.64698 * 178.85099 * 14 13 12 16 16 H 1.08004 * 119.99606 * 169.55960 * 15 14 13 17 17 C 1.38807 * 120.00167 * 349.56117 * 15 14 13 18 18 N 1.31621 * 120.00288 * 152.80040 * 17 15 14 19 19 Si 1.86799 * 120.00074 * 332.79751 * 17 15 14 20 20 H 1.48505 * 109.46890 * 85.29216 * 19 17 15 21 21 H 1.48497 * 109.47733 * 205.29476 * 19 17 15 22 22 H 1.48506 * 109.47292 * 325.29549 * 19 17 15 23 23 C 1.47432 * 108.70275 * 358.58536 * 14 13 12 24 24 C 1.34938 * 107.29894 * 359.60791 * 4 3 2 25 25 O 1.21818 * 126.30201 * 180.22174 * 24 4 3 26 26 N 1.34814 * 107.39745 * 0.23766 * 24 4 3 27 27 C 1.46502 * 125.83417 * 179.97438 * 26 24 4 28 28 H 1.08993 * 109.47026 * 270.28774 * 1 2 3 29 29 H 1.08999 * 109.46938 * 30.28922 * 1 2 3 30 30 H 1.09001 * 109.46872 * 150.28817 * 1 2 3 31 31 H 1.08999 * 109.47372 * 149.68018 * 5 4 3 32 32 H 1.09004 * 109.47415 * 29.67948 * 5 4 3 33 33 H 0.96998 * 119.99873 * 359.97438 * 8 6 5 34 34 H 1.08998 * 109.47024 * 59.99387 * 9 8 6 35 35 H 1.09004 * 109.46720 * 299.99713 * 9 8 6 36 36 H 0.96695 * 114.00060 * 297.56743 * 11 10 9 37 37 H 1.09008 * 110.71923 * 271.94001 * 12 10 9 38 38 H 1.08994 * 110.72383 * 35.03408 * 12 10 9 39 39 H 1.08997 * 109.99116 * 218.66767 * 13 12 10 40 40 H 1.09002 * 109.77782 * 97.49100 * 13 12 10 41 41 H 0.97001 * 119.99981 * 5.04665 * 18 17 15 42 42 H 1.08995 * 110.36373 * 143.19582 * 23 14 13 43 43 H 1.09002 * 110.36426 * 265.51652 * 23 14 13 44 44 H 1.08995 * 109.47215 * 0.02562 * 27 26 24 45 45 H 1.09006 * 109.47074 * 120.01888 * 27 26 24 46 46 H 1.08991 * 109.46936 * 240.01651 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2600 1.0524 0.0000 4 7 3.5972 0.6322 -0.0033 5 6 4.7794 1.4975 -0.0068 6 6 5.1856 1.7872 -1.4289 7 8 4.5503 1.3167 -2.3487 8 7 6.2552 2.5682 -1.6784 9 6 6.6504 2.8494 -3.0609 10 6 7.8849 3.7532 -3.0646 11 8 9.0238 3.0621 -2.5474 12 6 8.1664 4.3041 -4.4875 13 6 8.9074 5.6286 -4.2072 14 7 8.5620 6.0407 -2.8388 15 6 9.0326 7.1559 -2.1985 16 1 8.5947 7.4652 -1.2609 17 6 10.0722 7.8886 -2.7543 18 7 10.1843 9.1739 -2.4938 19 14 11.3123 7.0506 -3.8720 20 1 10.7872 7.0225 -5.2608 21 1 12.5928 7.8020 -3.8421 22 1 11.5428 5.6610 -3.4017 23 6 7.6202 5.0579 -2.2726 24 6 3.5938 -0.7172 0.0036 25 8 4.5738 -1.4409 0.0071 26 7 2.3064 -1.1170 0.0055 27 6 1.8395 -2.5057 0.0120 28 1 -0.3633 0.0052 1.0276 29 1 -0.3633 0.8874 -0.5183 30 1 -0.3633 -0.8926 -0.5094 31 1 5.5979 0.9966 0.5100 32 1 4.5466 2.4329 0.5021 33 1 6.7634 2.9442 -0.9427 34 1 5.8320 3.3504 -3.5779 35 1 6.8830 1.9138 -3.5696 36 1 8.9303 2.7843 -1.6259 37 1 8.7993 3.6168 -5.0489 38 1 7.2340 4.4902 -5.0204 39 1 8.5871 6.3920 -4.9162 40 1 9.9833 5.4734 -4.2871 41 1 9.5853 9.5937 -1.8567 42 1 7.8224 4.9058 -1.2125 43 1 6.5922 5.3892 -2.4199 44 1 2.6978 -3.1775 0.0156 45 1 1.2364 -2.6821 0.9028 46 1 1.2370 -2.6905 -0.8772 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569762146.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:23 Heat of formation + Delta-G solvation = 3.662020 kcal Electronic energy + Delta-G solvation = -29799.300675 eV Core-core repulsion = 25534.842438 eV Total energy + Delta-G solvation = -4264.458237 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -42.75136 -40.05128 -38.70794 -37.61417 -35.74874 -35.32690 -34.32741 -32.67218 -32.35412 -31.01621 -29.93849 -28.68982 -27.75850 -26.94303 -25.51178 -23.24220 -22.12725 -21.41257 -21.12053 -20.42026 -20.12818 -18.19649 -17.77577 -17.43128 -16.94488 -16.51751 -16.27749 -16.07861 -15.61233 -15.39747 -15.06885 -14.63560 -14.47487 -14.22988 -14.09653 -13.96230 -13.65081 -13.38757 -13.32415 -13.21613 -13.04463 -12.90191 -12.54551 -12.25483 -12.15260 -12.06027 -11.90705 -11.33511 -11.08755 -11.02120 -10.81642 -10.71011 -10.54793 -10.36811 -9.95222 -9.74382 -9.55074 -9.25744 -9.13362 -8.77438 -8.42148 -7.11805 -6.34532 -3.19877 1.34913 1.59272 2.36641 2.39243 2.62081 3.05092 3.45074 3.57599 3.74228 3.96042 4.19829 4.29637 4.41893 4.53354 4.60842 4.63690 4.65779 4.73331 4.79149 4.89067 4.89838 5.04877 5.10263 5.14759 5.19987 5.27624 5.47757 5.50411 5.58216 5.68803 5.74263 5.80465 6.02837 6.10740 6.16618 6.19400 6.29018 6.36233 6.56754 6.75259 7.21751 7.31868 7.64446 7.74418 7.82780 7.97774 8.31805 9.01270 9.57118 10.23164 11.13680 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027308 B = 0.002199 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.105021 B =12728.636841 C =13088.615955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.275 3.725 3 N -0.271 5.271 4 N -0.437 5.437 5 C 0.143 3.857 6 C 0.498 3.502 7 O -0.527 6.527 8 N -0.723 5.723 9 C 0.107 3.893 10 C 0.099 3.901 11 O -0.538 6.538 12 C -0.112 4.112 13 C 0.120 3.880 14 N -0.602 5.602 15 C -0.333 4.333 16 H 0.076 0.924 17 C -0.018 4.018 18 N -0.916 5.916 19 Si 1.067 2.933 20 H -0.294 1.294 21 H -0.301 1.301 22 H -0.288 1.288 23 C 0.116 3.884 24 C 0.654 3.346 25 O -0.553 6.553 26 N -0.558 5.558 27 C 0.096 3.904 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.402 0.598 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.369 0.631 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.042 0.958 40 H 0.034 0.966 41 H 0.262 0.738 42 H 0.044 0.956 43 H 0.034 0.966 44 H 0.095 0.905 45 H 0.079 0.921 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.610 -22.213 6.883 31.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.003 4.003 3 N -0.093 5.093 4 N -0.256 5.256 5 C 0.017 3.983 6 C 0.282 3.718 7 O -0.402 6.402 8 N -0.377 5.377 9 C -0.017 4.017 10 C 0.056 3.944 11 O -0.343 6.343 12 C -0.150 4.150 13 C -0.005 4.005 14 N -0.329 5.329 15 C -0.460 4.460 16 H 0.093 0.907 17 C -0.219 4.219 18 N -0.556 5.556 19 Si 0.901 3.099 20 H -0.222 1.222 21 H -0.229 1.229 22 H -0.216 1.216 23 C -0.011 4.011 24 C 0.354 3.646 25 O -0.426 6.426 26 N -0.287 5.287 27 C -0.046 4.046 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.144 0.856 32 H 0.146 0.854 33 H 0.237 0.763 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.216 0.784 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.113 0.887 45 H 0.097 0.903 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.685 -21.545 4.702 28.904 hybrid contribution -1.202 -0.962 1.860 2.415 sum -19.887 -22.508 6.562 30.743 Atomic orbital electron populations 1.20426 0.82789 1.05399 1.04771 1.24197 0.96523 0.81884 0.97729 1.77010 0.87337 1.20988 1.24014 1.48137 1.03760 1.04711 1.68984 1.21224 0.85202 0.96385 0.95486 1.20863 0.80567 0.78733 0.91610 1.90733 1.52876 1.50563 1.46036 1.45889 1.30740 1.51473 1.09552 1.22017 0.97164 1.00150 0.82386 1.22733 0.84121 0.90712 0.96810 1.86608 1.39751 1.76803 1.31102 1.22561 1.01433 0.97403 0.93606 1.21643 0.97399 0.93253 0.88214 1.44672 1.52532 1.25735 1.09999 1.19973 1.16552 1.00910 1.08546 0.90659 1.25799 0.98397 0.95194 1.02472 1.70944 1.43903 1.07639 1.33142 0.83746 0.76327 0.74365 0.75478 1.22195 1.22881 1.21577 1.22231 0.94622 0.88159 0.96101 1.16616 0.83672 0.83223 0.81106 1.91087 1.34792 1.57944 1.58795 1.45787 1.06586 1.08356 1.67983 1.21830 1.01859 0.77888 1.03035 0.88708 0.88184 0.89352 0.85572 0.85389 0.76350 0.90233 0.90563 0.78448 0.90165 0.89835 0.93984 0.94916 0.92724 0.93739 0.94817 0.88657 0.90272 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.23 10.20 36.01 0.37 0.14 16 2 C 0.28 2.34 7.98 -154.16 -1.23 1.11 16 3 N -0.27 -3.12 12.53 32.97 0.41 -2.71 16 4 N -0.44 -5.54 3.11 -66.31 -0.21 -5.74 16 5 C 0.14 1.46 6.87 -5.19 -0.04 1.43 16 6 C 0.50 6.56 7.90 -10.98 -0.09 6.47 16 7 O -0.53 -9.24 16.43 5.55 0.09 -9.15 16 8 N -0.72 -8.34 5.19 -60.29 -0.31 -8.65 16 9 C 0.11 1.45 4.97 -4.04 -0.02 1.43 16 10 C 0.10 1.56 0.95 -88.47 -0.08 1.48 16 11 O -0.54 -8.77 13.18 -35.23 -0.46 -9.24 16 12 C -0.11 -1.90 6.16 -24.89 -0.15 -2.06 16 13 C 0.12 2.66 5.00 -3.06 -0.02 2.64 16 14 N -0.60 -14.64 3.28 -170.07 -0.56 -15.20 16 15 C -0.33 -9.48 10.43 -15.06 -0.16 -9.64 16 16 H 0.08 2.24 8.06 -52.48 -0.42 1.81 16 17 C -0.02 -0.52 5.43 -17.43 -0.09 -0.61 16 18 N -0.92 -28.71 13.70 55.49 0.76 -27.95 16 19 Si 1.07 27.44 24.69 -169.99 -4.20 23.24 16 20 H -0.29 -7.13 6.80 56.52 0.38 -6.75 16 21 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 22 H -0.29 -7.25 6.75 56.52 0.38 -6.87 16 23 C 0.12 2.16 5.74 -2.53 -0.01 2.15 16 24 C 0.65 8.92 8.60 -86.74 -0.75 8.17 16 25 O -0.55 -9.12 17.48 5.08 0.09 -9.03 16 26 N -0.56 -5.36 3.14 -125.41 -0.39 -5.75 16 27 C 0.10 0.49 10.65 59.85 0.64 1.12 16 28 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.10 7.85 -51.93 -0.41 -0.31 16 31 H 0.13 1.04 8.11 -51.93 -0.42 0.62 16 32 H 0.13 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.40 3.63 7.31 -40.82 -0.30 3.33 16 34 H 0.08 1.12 8.00 -51.93 -0.42 0.70 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.37 4.51 8.57 45.56 0.39 4.90 16 37 H 0.08 1.27 8.14 -51.92 -0.42 0.84 16 38 H 0.08 1.23 7.93 -51.93 -0.41 0.82 16 39 H 0.04 0.96 7.97 -51.93 -0.41 0.55 16 40 H 0.03 0.79 3.59 -51.93 -0.19 0.60 16 41 H 0.26 8.10 8.73 -40.82 -0.36 7.75 16 42 H 0.04 0.78 7.80 -51.93 -0.41 0.38 16 43 H 0.03 0.63 8.04 -51.93 -0.42 0.21 16 44 H 0.09 0.59 7.73 -51.93 -0.40 0.19 16 45 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 46 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 380.98 15.07 5.74 5.74 Total: -1.00 -42.24 380.98 -6.63 -48.87 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -5.96 Total: 1.72 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: -1.63 Total: 13.83 kcal Atomic # 7 Polarization: -65.70 SS G_CDS: -0.30 Total: -65.99 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.28 Total: -27.42 kcal Atomic # 14 Polarization: 27.44 SS G_CDS: -4.20 Total: 23.24 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -42.24 -6.63 -48.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569762146.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.534 kcal (2) G-P(sol) polarization free energy of solvation -42.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds