Wall clock time and date at job start Tue Mar 31 2020 22:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29402 * 125.58538 * 2 1 4 4 N 1.40168 * 108.14087 * 180.14145 * 3 2 1 5 5 C 1.46503 * 126.35058 * 179.88228 * 4 3 2 6 6 C 1.50705 * 109.46885 * 269.68605 * 5 4 3 7 7 O 1.21283 * 119.99503 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99794 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99683 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.46905 * 179.97438 * 9 8 6 11 11 O 1.42907 * 110.88261 * 67.42627 * 10 9 8 12 12 C 1.55155 * 111.00233 * 191.34860 * 10 9 8 13 13 C 1.54337 * 103.02124 * 153.38273 * 12 10 9 14 14 N 1.47022 * 107.26372 * 338.14006 * 13 12 10 15 15 C 1.36932 * 125.64698 * 178.85099 * 14 13 12 16 16 H 1.08004 * 119.99606 * 169.55960 * 15 14 13 17 17 C 1.38807 * 120.00167 * 349.56117 * 15 14 13 18 18 N 1.31621 * 120.00288 * 152.80040 * 17 15 14 19 19 Si 1.86799 * 120.00074 * 332.79751 * 17 15 14 20 20 H 1.48505 * 109.46890 * 85.29216 * 19 17 15 21 21 H 1.48497 * 109.47733 * 205.29476 * 19 17 15 22 22 H 1.48506 * 109.47292 * 325.29549 * 19 17 15 23 23 C 1.47432 * 108.70275 * 358.58536 * 14 13 12 24 24 C 1.34938 * 107.29894 * 359.60791 * 4 3 2 25 25 O 1.21818 * 126.30201 * 180.22174 * 24 4 3 26 26 N 1.34814 * 107.39745 * 0.23766 * 24 4 3 27 27 C 1.46502 * 125.83417 * 179.97438 * 26 24 4 28 28 H 1.08993 * 109.47026 * 270.28774 * 1 2 3 29 29 H 1.08999 * 109.46938 * 30.28922 * 1 2 3 30 30 H 1.09001 * 109.46872 * 150.28817 * 1 2 3 31 31 H 1.08999 * 109.47372 * 149.68018 * 5 4 3 32 32 H 1.09004 * 109.47415 * 29.67948 * 5 4 3 33 33 H 0.96998 * 119.99873 * 359.97438 * 8 6 5 34 34 H 1.08998 * 109.47024 * 59.99387 * 9 8 6 35 35 H 1.09004 * 109.46720 * 299.99713 * 9 8 6 36 36 H 0.96695 * 114.00060 * 297.56743 * 11 10 9 37 37 H 1.09008 * 110.71923 * 271.94001 * 12 10 9 38 38 H 1.08994 * 110.72383 * 35.03408 * 12 10 9 39 39 H 1.08997 * 109.99116 * 218.66767 * 13 12 10 40 40 H 1.09002 * 109.77782 * 97.49100 * 13 12 10 41 41 H 0.97001 * 119.99981 * 5.04665 * 18 17 15 42 42 H 1.08995 * 110.36373 * 143.19582 * 23 14 13 43 43 H 1.09002 * 110.36426 * 265.51652 * 23 14 13 44 44 H 1.08995 * 109.47215 * 0.02562 * 27 26 24 45 45 H 1.09006 * 109.47074 * 120.01888 * 27 26 24 46 46 H 1.08991 * 109.46936 * 240.01651 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2600 1.0524 0.0000 4 7 3.5972 0.6322 -0.0033 5 6 4.7794 1.4975 -0.0068 6 6 5.1856 1.7872 -1.4289 7 8 4.5503 1.3167 -2.3487 8 7 6.2552 2.5682 -1.6784 9 6 6.6504 2.8494 -3.0609 10 6 7.8849 3.7532 -3.0646 11 8 9.0238 3.0621 -2.5474 12 6 8.1664 4.3041 -4.4875 13 6 8.9074 5.6286 -4.2072 14 7 8.5620 6.0407 -2.8388 15 6 9.0326 7.1559 -2.1985 16 1 8.5947 7.4652 -1.2609 17 6 10.0722 7.8886 -2.7543 18 7 10.1843 9.1739 -2.4938 19 14 11.3123 7.0506 -3.8720 20 1 10.7872 7.0225 -5.2608 21 1 12.5928 7.8020 -3.8421 22 1 11.5428 5.6610 -3.4017 23 6 7.6202 5.0579 -2.2726 24 6 3.5938 -0.7172 0.0036 25 8 4.5738 -1.4409 0.0071 26 7 2.3064 -1.1170 0.0055 27 6 1.8395 -2.5057 0.0120 28 1 -0.3633 0.0052 1.0276 29 1 -0.3633 0.8874 -0.5183 30 1 -0.3633 -0.8926 -0.5094 31 1 5.5979 0.9966 0.5100 32 1 4.5466 2.4329 0.5021 33 1 6.7634 2.9442 -0.9427 34 1 5.8320 3.3504 -3.5779 35 1 6.8830 1.9138 -3.5696 36 1 8.9303 2.7843 -1.6259 37 1 8.7993 3.6168 -5.0489 38 1 7.2340 4.4902 -5.0204 39 1 8.5871 6.3920 -4.9162 40 1 9.9833 5.4734 -4.2871 41 1 9.5853 9.5937 -1.8567 42 1 7.8224 4.9058 -1.2125 43 1 6.5922 5.3892 -2.4199 44 1 2.6978 -3.1775 0.0156 45 1 1.2364 -2.6821 0.9028 46 1 1.2370 -2.6905 -0.8772 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569762146.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:22 Heat of formation + Delta-G solvation = -32.176031 kcal Electronic energy + Delta-G solvation = -29800.854730 eV Core-core repulsion = 25534.842438 eV Total energy + Delta-G solvation = -4266.012292 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.52723 -41.19928 -40.04379 -38.57704 -36.98764 -36.41547 -35.47111 -34.37205 -33.34568 -31.97777 -31.29149 -30.04218 -28.36846 -28.00049 -26.79204 -24.83086 -23.04383 -22.71363 -22.09368 -21.61684 -21.49873 -19.57074 -19.11401 -18.56330 -17.97192 -17.53917 -17.36038 -17.01541 -16.82180 -16.55015 -16.33598 -16.13177 -15.72998 -15.31243 -15.10017 -14.95439 -14.74757 -14.64506 -14.44244 -14.15711 -13.80467 -13.63078 -13.37545 -13.33859 -13.12421 -13.07477 -13.03857 -12.91352 -12.88989 -12.65408 -12.25497 -11.99294 -11.67092 -11.58197 -11.47672 -11.13993 -11.08777 -10.81290 -10.57201 -10.30953 -9.63249 -9.17085 -8.64157 -5.42303 0.60853 0.93340 1.39334 1.39383 1.45937 1.51650 1.71191 1.91620 2.16352 2.49602 2.96830 3.12680 3.22928 3.32124 3.45162 3.61253 3.67811 3.75056 3.80059 4.01213 4.09238 4.18940 4.24441 4.33879 4.46284 4.53655 4.69329 4.69946 4.70384 4.75906 4.80763 4.81676 4.82427 4.88176 4.94789 5.01286 5.05639 5.11239 5.20474 5.56073 5.61444 6.09997 6.27945 6.55604 6.72405 6.81554 6.85026 7.00503 7.46912 8.11142 8.84563 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027308 B = 0.002199 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.105021 B =12728.636841 C =13088.615955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.287 3.713 3 N -0.309 5.309 4 N -0.445 5.445 5 C 0.139 3.861 6 C 0.499 3.501 7 O -0.574 6.574 8 N -0.711 5.711 9 C 0.121 3.879 10 C 0.118 3.882 11 O -0.553 6.553 12 C -0.108 4.108 13 C 0.109 3.891 14 N -0.624 5.624 15 C -0.317 4.317 16 H 0.051 0.949 17 C -0.075 4.075 18 N -0.953 5.953 19 Si 1.109 2.891 20 H -0.274 1.274 21 H -0.307 1.307 22 H -0.280 1.280 23 C 0.110 3.890 24 C 0.634 3.366 25 O -0.596 6.596 26 N -0.556 5.556 27 C 0.086 3.914 28 H 0.120 0.880 29 H 0.103 0.897 30 H 0.115 0.885 31 H 0.144 0.856 32 H 0.157 0.843 33 H 0.415 0.585 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.387 0.613 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.030 0.970 40 H 0.021 0.979 41 H 0.250 0.750 42 H 0.056 0.944 43 H 0.041 0.959 44 H 0.078 0.922 45 H 0.113 0.887 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.710 -24.595 6.892 34.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.009 3.991 3 N -0.132 5.132 4 N -0.263 5.263 5 C 0.014 3.986 6 C 0.285 3.715 7 O -0.453 6.453 8 N -0.365 5.365 9 C -0.004 4.004 10 C 0.076 3.924 11 O -0.361 6.361 12 C -0.146 4.146 13 C -0.016 4.016 14 N -0.352 5.352 15 C -0.446 4.446 16 H 0.069 0.931 17 C -0.270 4.270 18 N -0.596 5.596 19 Si 0.938 3.062 20 H -0.201 1.201 21 H -0.236 1.236 22 H -0.207 1.207 23 C -0.015 4.015 24 C 0.333 3.667 25 O -0.473 6.473 26 N -0.284 5.284 27 C -0.054 4.054 28 H 0.138 0.862 29 H 0.121 0.879 30 H 0.133 0.867 31 H 0.162 0.838 32 H 0.175 0.825 33 H 0.253 0.747 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.236 0.764 37 H 0.116 0.884 38 H 0.126 0.874 39 H 0.048 0.952 40 H 0.039 0.961 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.097 0.903 45 H 0.131 0.869 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -20.845 -23.960 4.745 32.111 hybrid contribution -0.713 -0.270 1.949 2.093 sum -21.557 -24.230 6.694 33.116 Atomic orbital electron populations 1.20752 0.78825 1.06843 1.06765 1.25253 0.98300 0.80762 0.94776 1.77019 0.86947 1.22421 1.26853 1.48369 1.04772 1.04661 1.68537 1.21468 0.85557 0.97793 0.93773 1.21351 0.80005 0.77819 0.92326 1.90708 1.54471 1.52461 1.47618 1.45756 1.30444 1.50965 1.09348 1.21757 0.95823 0.99398 0.83423 1.22449 0.84888 0.89620 0.95460 1.86577 1.40072 1.76638 1.32768 1.22606 1.02366 0.94870 0.94730 1.21773 0.97372 0.95625 0.86827 1.44761 1.53028 1.26046 1.11327 1.19912 1.15306 1.02024 1.07330 0.93085 1.26870 1.00342 0.95176 1.04572 1.71038 1.44849 1.08960 1.34780 0.83163 0.74126 0.73582 0.75295 1.20090 1.23611 1.20699 1.22432 0.93449 0.88485 0.97134 1.17001 0.84598 0.83561 0.81524 1.91029 1.36415 1.58938 1.60961 1.46079 1.05462 1.10164 1.66683 1.22203 1.01847 0.75381 1.05964 0.86211 0.87869 0.86686 0.83837 0.82517 0.74724 0.90281 0.90613 0.76409 0.88422 0.87352 0.95154 0.96148 0.94055 0.92547 0.94099 0.90306 0.86858 0.87869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.20 10.20 71.24 0.73 0.53 16 2 C 0.29 4.29 7.98 137.69 1.10 5.39 16 3 N -0.31 -6.75 12.53 -49.59 -0.62 -7.37 16 4 N -0.45 -10.98 3.11 -481.77 -1.50 -12.48 16 5 C 0.14 2.68 6.87 85.63 0.59 3.27 16 6 C 0.50 12.51 7.90 87.66 0.69 13.21 16 7 O -0.57 -19.81 16.43 -3.04 -0.05 -19.86 16 8 N -0.71 -14.86 5.19 -463.04 -2.40 -17.27 16 9 C 0.12 2.97 4.97 86.38 0.43 3.40 16 10 C 0.12 3.43 0.95 -9.40 -0.01 3.42 16 11 O -0.55 -16.46 13.18 -148.98 -1.96 -18.42 16 12 C -0.11 -3.36 6.16 31.79 0.20 -3.16 16 13 C 0.11 4.64 5.00 86.73 0.43 5.08 16 14 N -0.62 -29.76 3.28 -691.96 -2.27 -32.03 16 15 C -0.32 -18.25 10.43 84.03 0.88 -17.37 16 16 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 17 C -0.07 -4.50 5.43 84.86 0.46 -4.04 16 18 N -0.95 -61.35 13.70 21.65 0.30 -61.06 16 19 Si 1.11 55.89 24.69 68.60 1.69 57.59 16 20 H -0.27 -12.78 6.80 99.48 0.68 -12.10 16 21 H -0.31 -15.66 7.11 99.48 0.71 -14.96 16 22 H -0.28 -13.54 6.75 99.48 0.67 -12.87 16 23 C 0.11 3.91 5.74 86.85 0.50 4.41 16 24 C 0.63 17.15 8.60 178.99 1.54 18.69 16 25 O -0.60 -20.05 17.48 -4.73 -0.08 -20.13 16 26 N -0.56 -9.88 3.14 -668.83 -2.10 -11.98 16 27 C 0.09 0.69 10.65 127.77 1.36 2.05 16 28 H 0.12 -0.19 8.14 -2.39 -0.02 -0.21 16 29 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.11 -0.26 7.85 -2.39 -0.02 -0.28 16 31 H 0.14 2.20 8.11 -2.39 -0.02 2.18 16 32 H 0.16 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.42 6.43 7.31 -92.71 -0.68 5.75 16 34 H 0.08 2.01 8.00 -2.39 -0.02 2.00 16 35 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.39 8.32 8.57 -74.06 -0.63 7.68 16 37 H 0.10 2.75 8.14 -2.38 -0.02 2.73 16 38 H 0.11 2.83 7.93 -2.39 -0.02 2.82 16 39 H 0.03 1.36 7.97 -2.39 -0.02 1.34 16 40 H 0.02 0.95 3.59 -2.39 -0.01 0.95 16 41 H 0.25 16.07 8.73 -92.71 -0.81 15.26 16 42 H 0.06 1.86 7.80 -2.39 -0.02 1.84 16 43 H 0.04 1.43 8.04 -2.39 -0.02 1.41 16 44 H 0.08 0.93 7.73 -2.39 -0.02 0.91 16 45 H 0.11 0.13 8.14 -2.38 -0.02 0.11 16 46 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -95.51 380.98 -0.50 -96.01 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -0.39 Total: 12.14 kcal Atomic # 6 Polarization: 25.97 SS G_CDS: 8.89 Total: 34.86 kcal Atomic # 7 Polarization: -133.58 SS G_CDS: -8.60 Total: -142.18 kcal Atomic # 8 Polarization: -56.32 SS G_CDS: -2.10 Total: -58.41 kcal Atomic # 14 Polarization: 55.89 SS G_CDS: 1.69 Total: 57.59 kcal Total: -95.51 -0.50 -96.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569762146.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.830 kcal (2) G-P(sol) polarization free energy of solvation -95.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds