Wall clock time and date at job start Tue Mar 31 2020 22:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30277 * 126.27896 * 2 1 4 4 N 1.28673 * 109.37779 * 180.02562 * 3 2 1 5 5 C 1.30275 * 109.37971 * 0.02562 * 4 3 2 6 6 C 1.50699 * 126.28308 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47585 * 90.01626 * 6 5 4 8 8 O 1.21281 * 120.00169 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99834 * 180.02562 * 7 6 5 10 10 C 1.46507 * 119.99612 * 180.02562 * 9 7 6 11 11 C 1.53007 * 109.46806 * 175.02193 * 10 9 7 12 12 H 1.09005 * 109.46545 * 174.77666 * 11 10 9 13 13 C 1.52999 * 109.47000 * 294.77475 * 11 10 9 14 14 N 1.46898 * 109.47089 * 54.77950 * 11 10 9 15 15 C 1.46901 * 111.00077 * 55.38627 * 14 11 10 16 16 C 1.46901 * 110.99814 * 179.34192 * 14 11 10 17 17 C 1.50699 * 109.47095 * 169.99733 * 16 14 11 18 18 O 1.21297 * 119.99963 * 0.02562 * 17 16 14 19 19 N 1.34771 * 119.99941 * 179.97438 * 17 16 14 20 20 C 1.37102 * 120.00004 * 180.02562 * 19 17 16 21 21 H 1.07993 * 119.99797 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99781 * 180.02562 * 20 19 17 23 23 N 1.31408 * 120.00244 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99873 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47164 * 89.99217 * 24 22 20 26 26 H 1.48494 * 109.47105 * 209.99819 * 24 22 20 27 27 H 1.48503 * 109.46615 * 329.99685 * 24 22 20 28 28 O 1.34357 * 126.28253 * 180.28400 * 2 1 3 29 29 H 1.08998 * 109.46911 * 89.97445 * 1 2 3 30 30 H 1.08992 * 109.46893 * 209.97617 * 1 2 3 31 31 H 1.09007 * 109.46630 * 329.97831 * 1 2 3 32 32 H 1.09003 * 109.46609 * 330.01681 * 6 5 4 33 33 H 1.09006 * 109.47144 * 210.01944 * 6 5 4 34 34 H 0.96989 * 120.00349 * 0.02562 * 9 7 6 35 35 H 1.08997 * 109.47152 * 55.02016 * 10 9 7 36 36 H 1.08997 * 109.46906 * 295.01734 * 10 9 7 37 37 H 1.08998 * 109.47216 * 300.00626 * 13 11 10 38 38 H 1.09002 * 109.46840 * 60.00486 * 13 11 10 39 39 H 1.08999 * 109.46964 * 179.97438 * 13 11 10 40 40 H 1.09000 * 109.47049 * 177.40894 * 15 14 11 41 41 H 1.09002 * 109.47092 * 297.40698 * 15 14 11 42 42 H 1.09004 * 109.47262 * 57.41029 * 15 14 11 43 43 H 1.08993 * 109.47366 * 49.99788 * 16 14 11 44 44 H 1.08998 * 109.46866 * 289.99902 * 16 14 11 45 45 H 0.97003 * 120.00312 * 0.02562 * 19 17 16 46 46 H 0.97001 * 119.99846 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6761 -0.0005 5 6 3.5654 -0.6254 -0.0015 6 6 4.8176 -1.4638 -0.0029 7 6 5.2359 -1.7446 1.4174 8 8 4.5813 -1.3075 2.3400 9 7 6.3374 -2.4817 1.6623 10 6 6.7436 -2.7551 3.0431 11 6 7.9416 -3.7070 3.0432 12 1 8.3019 -3.8373 4.0637 13 6 7.5159 -5.0625 2.4756 14 7 9.0147 -3.1436 2.2132 15 6 9.3743 -1.7923 2.6635 16 6 10.1898 -4.0251 2.2024 17 6 11.1665 -3.5475 1.1588 18 8 10.9092 -2.5687 0.4902 19 7 12.3262 -4.2073 0.9692 20 6 13.2150 -3.7725 0.0202 21 1 12.9856 -2.9016 -0.5757 22 6 14.4105 -4.4531 -0.1756 23 7 14.6894 -5.5132 0.5491 24 14 15.6212 -3.8611 -1.4692 25 1 16.5625 -2.8886 -0.8580 26 1 16.3826 -5.0196 -2.0015 27 1 14.8808 -3.2045 -2.5764 28 8 2.3021 -1.0830 -0.0054 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3633 -0.8901 0.5134 31 1 -0.3633 0.8899 0.5142 32 1 5.6144 -0.9259 -0.5166 33 1 4.6241 -2.4050 -0.5175 34 1 6.8611 -2.8310 0.9245 35 1 5.9146 -3.2143 3.5815 36 1 7.0215 -1.8213 3.5317 37 1 6.7196 -5.4805 3.0915 38 1 7.1556 -4.9321 1.4551 39 1 8.3695 -5.7404 2.4752 40 1 10.2018 -1.4169 2.0615 41 1 8.5147 -1.1314 2.5520 42 1 9.6733 -1.8261 3.7112 43 1 9.8781 -5.0432 1.9694 44 1 10.6669 -4.0065 3.1822 45 1 12.5322 -4.9898 1.5042 46 1 15.5242 -5.9880 0.4126 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570709262.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:39 Heat of formation + Delta-G solvation = -21.817425 kcal Electronic energy + Delta-G solvation = -29051.323425 eV Core-core repulsion = 24785.760315 eV Total energy + Delta-G solvation = -4265.563109 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.42992 -40.07933 -38.85401 -37.31987 -36.36256 -34.48255 -33.89027 -33.80820 -31.67390 -31.28529 -30.79050 -28.62207 -27.60193 -26.02233 -24.94382 -23.80020 -23.19832 -22.72327 -20.89400 -20.07698 -19.14130 -18.09660 -17.86561 -17.44442 -16.94372 -16.66561 -16.15742 -15.74058 -15.41076 -15.08553 -14.79198 -14.62887 -14.59391 -14.11155 -13.95995 -13.79229 -13.57765 -13.41594 -13.28826 -13.17415 -12.88640 -12.57156 -12.36605 -12.28267 -12.03760 -11.95086 -11.68785 -11.51829 -11.41261 -11.25448 -11.16849 -10.96793 -10.68636 -10.42313 -10.30696 -10.25578 -9.66913 -9.51540 -9.18388 -8.52697 -8.04421 -7.95394 -6.45774 -3.86656 0.88727 1.92346 2.16261 2.37507 3.02094 3.14801 3.24061 3.29398 3.52467 3.84143 3.87578 4.07652 4.19434 4.42518 4.53423 4.62772 4.76981 4.83383 4.84493 4.95252 5.05650 5.11878 5.16187 5.21648 5.22401 5.32132 5.42902 5.48053 5.49851 5.60571 5.67146 5.70955 5.83679 5.90695 5.94184 6.13402 6.22992 6.27406 6.50134 7.14871 7.26607 7.35212 7.51386 7.99758 8.02161 8.09388 8.57125 9.14104 9.50108 10.01431 10.71797 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018378 B = 0.001996 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.197100 B =14022.720739 C =14955.645579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.160 3.840 3 N -0.288 5.288 4 N -0.273 5.273 5 C 0.188 3.812 6 C -0.049 4.049 7 C 0.518 3.482 8 O -0.541 6.541 9 N -0.705 5.705 10 C 0.130 3.870 11 C 0.063 3.937 12 H 0.056 0.944 13 C -0.148 4.148 14 N -0.514 5.514 15 C 0.018 3.982 16 C 0.041 3.959 17 C 0.443 3.557 18 O -0.578 6.578 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 O -0.222 6.222 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.146 0.854 33 H 0.129 0.871 34 H 0.416 0.584 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.097 0.903 41 H 0.063 0.937 42 H 0.015 0.985 43 H 0.093 0.907 44 H 0.048 0.952 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.035 0.773 2.477 23.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.050 4.050 3 N -0.136 5.136 4 N -0.119 5.119 5 C -0.024 4.024 6 C -0.090 4.090 7 C 0.302 3.698 8 O -0.418 6.418 9 N -0.358 5.358 10 C 0.006 3.994 11 C -0.046 4.046 12 H 0.074 0.926 13 C -0.206 4.206 14 N -0.239 5.239 15 C -0.129 4.129 16 C -0.090 4.090 17 C 0.229 3.771 18 O -0.462 6.462 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 O -0.101 6.101 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.125 0.875 32 H 0.163 0.837 33 H 0.147 0.853 34 H 0.254 0.746 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.115 0.885 41 H 0.082 0.918 42 H 0.033 0.967 43 H 0.111 0.889 44 H 0.066 0.934 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.293 2.880 2.206 23.574 hybrid contribution 1.150 -1.767 0.290 2.128 sum -22.144 1.113 2.496 22.312 Atomic orbital electron populations 1.20349 0.80188 1.05766 1.05157 1.27979 0.97808 0.79638 0.99610 1.74394 0.96034 1.25631 1.17514 1.74387 1.12193 1.08958 1.16369 1.26881 0.84618 0.91283 0.99611 1.20124 0.90194 1.00820 0.97825 1.19964 0.81187 0.78720 0.89932 1.90758 1.54030 1.51207 1.45830 1.45760 1.26897 1.53167 1.10006 1.21431 0.95959 0.99104 0.82912 1.21980 0.91730 0.94677 0.96209 0.92640 1.21919 1.01517 0.95370 1.01792 1.61643 1.07831 1.02668 1.51769 1.22593 1.02951 0.89597 0.97796 1.21947 0.91197 0.97577 0.98261 1.19707 0.83416 0.86612 0.87384 1.90489 1.77038 1.28286 1.50404 1.41871 1.15850 1.27656 1.34639 1.19687 0.97150 1.12350 1.13667 0.87895 1.25257 0.98242 0.95849 0.98559 1.69607 1.25560 1.18695 1.40395 0.85869 0.79956 0.78040 0.80496 1.20438 1.20939 1.19399 1.84738 1.17426 1.38337 1.69601 0.88319 0.88880 0.87518 0.83659 0.85276 0.74622 0.90794 0.91296 0.92153 0.91631 0.91733 0.88462 0.91846 0.96657 0.88942 0.93440 0.77536 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.27 10.51 36.01 0.38 0.11 16 2 C 0.16 1.71 8.48 -12.94 -0.11 1.60 16 3 N -0.29 -4.01 12.22 32.55 0.40 -3.62 16 4 N -0.27 -4.06 12.22 32.55 0.40 -3.66 16 5 C 0.19 2.32 6.97 -12.94 -0.09 2.23 16 6 C -0.05 -0.43 6.33 -29.04 -0.18 -0.62 16 7 C 0.52 6.06 7.82 -10.99 -0.09 5.98 16 8 O -0.54 -8.58 16.03 5.56 0.09 -8.49 16 9 N -0.71 -7.34 5.05 -60.29 -0.30 -7.64 16 10 C 0.13 1.38 4.59 -4.03 -0.02 1.36 16 11 C 0.06 0.67 2.34 -67.71 -0.16 0.51 16 12 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 13 C -0.15 -1.38 8.88 37.16 0.33 -1.05 16 14 N -0.51 -7.22 3.73 -236.33 -0.88 -8.10 16 15 C 0.02 0.27 8.66 60.07 0.52 0.79 16 16 C 0.04 0.66 5.27 -4.98 -0.03 0.63 16 17 C 0.44 9.69 7.45 -10.99 -0.08 9.61 16 18 O -0.58 -14.41 13.93 5.54 0.08 -14.34 16 19 N -0.56 -13.56 5.29 -10.96 -0.06 -13.62 16 20 C -0.30 -8.02 9.68 -14.93 -0.14 -8.17 16 21 H 0.10 2.90 7.16 -52.49 -0.38 2.53 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -23.85 13.05 55.50 0.72 -23.12 16 24 Si 0.93 20.55 29.55 -169.99 -5.02 15.52 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 28 O -0.22 -2.57 10.87 5.40 0.06 -2.52 16 29 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.15 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.13 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.42 4.09 7.42 -40.82 -0.30 3.79 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.81 6.71 -51.93 -0.35 0.46 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.61 7.31 -51.93 -0.38 0.23 16 39 H 0.06 0.63 6.21 -51.93 -0.32 0.30 16 40 H 0.10 1.81 5.80 -51.93 -0.30 1.51 16 41 H 0.06 0.88 6.48 -51.93 -0.34 0.54 16 42 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 43 H 0.09 1.31 5.85 -51.93 -0.30 1.01 16 44 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 45 H 0.39 9.05 7.90 -40.82 -0.32 8.73 16 46 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 386.30 15.07 5.82 5.82 Total: -1.00 -35.66 386.30 -4.82 -40.48 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.35 Total: 9.80 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: 0.23 Total: 13.48 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: 0.28 Total: -59.76 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: 0.22 Total: -25.34 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.66 -4.82 -40.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570709262.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.664 kcal (2) G-P(sol) polarization free energy of solvation -35.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds