Wall clock time and date at job start Tue Mar 31 2020 22:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30277 * 126.27896 * 2 1 4 4 N 1.28673 * 109.37779 * 180.02562 * 3 2 1 5 5 C 1.30275 * 109.37971 * 0.02562 * 4 3 2 6 6 C 1.50699 * 126.28308 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47585 * 90.01626 * 6 5 4 8 8 O 1.21281 * 120.00169 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99834 * 180.02562 * 7 6 5 10 10 C 1.46507 * 119.99612 * 180.02562 * 9 7 6 11 11 C 1.53007 * 109.46806 * 175.02193 * 10 9 7 12 12 H 1.09005 * 109.46545 * 174.77666 * 11 10 9 13 13 C 1.52999 * 109.47000 * 294.77475 * 11 10 9 14 14 N 1.46898 * 109.47089 * 54.77950 * 11 10 9 15 15 C 1.46901 * 111.00077 * 55.38627 * 14 11 10 16 16 C 1.46901 * 110.99814 * 179.34192 * 14 11 10 17 17 C 1.50699 * 109.47095 * 169.99733 * 16 14 11 18 18 O 1.21297 * 119.99963 * 0.02562 * 17 16 14 19 19 N 1.34771 * 119.99941 * 179.97438 * 17 16 14 20 20 C 1.37102 * 120.00004 * 180.02562 * 19 17 16 21 21 H 1.07993 * 119.99797 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99781 * 180.02562 * 20 19 17 23 23 N 1.31408 * 120.00244 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99873 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47164 * 89.99217 * 24 22 20 26 26 H 1.48494 * 109.47105 * 209.99819 * 24 22 20 27 27 H 1.48503 * 109.46615 * 329.99685 * 24 22 20 28 28 O 1.34357 * 126.28253 * 180.28400 * 2 1 3 29 29 H 1.08998 * 109.46911 * 89.97445 * 1 2 3 30 30 H 1.08992 * 109.46893 * 209.97617 * 1 2 3 31 31 H 1.09007 * 109.46630 * 329.97831 * 1 2 3 32 32 H 1.09003 * 109.46609 * 330.01681 * 6 5 4 33 33 H 1.09006 * 109.47144 * 210.01944 * 6 5 4 34 34 H 0.96989 * 120.00349 * 0.02562 * 9 7 6 35 35 H 1.08997 * 109.47152 * 55.02016 * 10 9 7 36 36 H 1.08997 * 109.46906 * 295.01734 * 10 9 7 37 37 H 1.08998 * 109.47216 * 300.00626 * 13 11 10 38 38 H 1.09002 * 109.46840 * 60.00486 * 13 11 10 39 39 H 1.08999 * 109.46964 * 179.97438 * 13 11 10 40 40 H 1.09000 * 109.47049 * 177.40894 * 15 14 11 41 41 H 1.09002 * 109.47092 * 297.40698 * 15 14 11 42 42 H 1.09004 * 109.47262 * 57.41029 * 15 14 11 43 43 H 1.08993 * 109.47366 * 49.99788 * 16 14 11 44 44 H 1.08998 * 109.46866 * 289.99902 * 16 14 11 45 45 H 0.97003 * 120.00312 * 0.02562 * 19 17 16 46 46 H 0.97001 * 119.99846 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6761 -0.0005 5 6 3.5654 -0.6254 -0.0015 6 6 4.8176 -1.4638 -0.0029 7 6 5.2359 -1.7446 1.4174 8 8 4.5813 -1.3075 2.3400 9 7 6.3374 -2.4817 1.6623 10 6 6.7436 -2.7551 3.0431 11 6 7.9416 -3.7070 3.0432 12 1 8.3019 -3.8373 4.0637 13 6 7.5159 -5.0625 2.4756 14 7 9.0147 -3.1436 2.2132 15 6 9.3743 -1.7923 2.6635 16 6 10.1898 -4.0251 2.2024 17 6 11.1665 -3.5475 1.1588 18 8 10.9092 -2.5687 0.4902 19 7 12.3262 -4.2073 0.9692 20 6 13.2150 -3.7725 0.0202 21 1 12.9856 -2.9016 -0.5757 22 6 14.4105 -4.4531 -0.1756 23 7 14.6894 -5.5132 0.5491 24 14 15.6212 -3.8611 -1.4692 25 1 16.5625 -2.8886 -0.8580 26 1 16.3826 -5.0196 -2.0015 27 1 14.8808 -3.2045 -2.5764 28 8 2.3021 -1.0830 -0.0054 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3633 -0.8901 0.5134 31 1 -0.3633 0.8899 0.5142 32 1 5.6144 -0.9259 -0.5166 33 1 4.6241 -2.4050 -0.5175 34 1 6.8611 -2.8310 0.9245 35 1 5.9146 -3.2143 3.5815 36 1 7.0215 -1.8213 3.5317 37 1 6.7196 -5.4805 3.0915 38 1 7.1556 -4.9321 1.4551 39 1 8.3695 -5.7404 2.4752 40 1 10.2018 -1.4169 2.0615 41 1 8.5147 -1.1314 2.5520 42 1 9.6733 -1.8261 3.7112 43 1 9.8781 -5.0432 1.9694 44 1 10.6669 -4.0065 3.1822 45 1 12.5322 -4.9898 1.5042 46 1 15.5242 -5.9880 0.4126 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570709262.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:39 Heat of formation + Delta-G solvation = -54.329483 kcal Electronic energy + Delta-G solvation = -29052.733253 eV Core-core repulsion = 24785.760315 eV Total energy + Delta-G solvation = -4266.972938 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.30548 -41.06595 -40.30618 -38.66604 -37.26827 -35.98591 -35.27441 -34.65622 -33.22612 -32.50341 -31.55528 -29.84272 -28.47762 -27.22115 -26.33833 -25.13654 -24.11405 -23.53974 -21.78881 -21.29716 -20.62622 -19.78521 -18.96420 -18.33235 -17.94646 -17.81241 -17.09967 -17.02294 -16.54081 -16.41913 -16.07804 -15.84379 -15.54795 -15.41508 -15.16805 -15.03357 -14.63758 -14.46284 -13.97155 -13.86037 -13.66980 -13.56912 -13.49783 -13.42751 -13.21130 -13.08536 -12.97147 -12.90844 -12.71194 -12.39835 -12.30704 -12.25695 -12.10910 -12.03443 -11.68301 -11.41202 -11.28106 -10.54410 -10.21362 -10.09992 -9.94764 -9.22863 -8.42941 -5.90464 0.05604 1.14748 1.27492 1.39597 1.43801 1.48120 1.55562 2.11953 2.17994 2.30739 2.74449 2.80796 3.24682 3.38075 3.46120 3.66167 3.73972 3.84628 4.02159 4.11014 4.23015 4.34384 4.36027 4.40215 4.42874 4.54827 4.55856 4.56780 4.60216 4.65702 4.71047 4.71792 4.79985 4.97160 5.04170 5.05743 5.21889 5.38366 5.39877 5.45339 5.89385 6.08693 6.20469 6.47822 6.65576 7.12442 7.18210 7.19860 7.63009 8.18739 8.74322 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018378 B = 0.001996 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.197100 B =14022.720739 C =14955.645579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.171 3.829 3 N -0.333 5.333 4 N -0.315 5.315 5 C 0.184 3.816 6 C -0.045 4.045 7 C 0.519 3.481 8 O -0.587 6.587 9 N -0.696 5.696 10 C 0.132 3.868 11 C 0.070 3.930 12 H 0.069 0.931 13 C -0.147 4.147 14 N -0.521 5.521 15 C 0.027 3.973 16 C 0.054 3.946 17 C 0.444 3.556 18 O -0.611 6.611 19 N -0.577 5.577 20 C -0.328 4.328 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.988 3.012 25 H -0.274 1.274 26 H -0.273 1.273 27 H -0.273 1.273 28 O -0.226 6.226 29 H 0.124 0.876 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.160 0.840 33 H 0.170 0.830 34 H 0.421 0.579 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.027 0.973 43 H 0.118 0.882 44 H 0.063 0.937 45 H 0.395 0.605 46 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.279 -0.812 2.529 24.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.040 4.040 3 N -0.179 5.179 4 N -0.160 5.160 5 C -0.029 4.029 6 C -0.085 4.085 7 C 0.305 3.695 8 O -0.468 6.468 9 N -0.348 5.348 10 C 0.007 3.993 11 C -0.038 4.038 12 H 0.087 0.913 13 C -0.204 4.204 14 N -0.247 5.247 15 C -0.121 4.121 16 C -0.076 4.076 17 C 0.231 3.769 18 O -0.497 6.497 19 N -0.214 5.214 20 C -0.457 4.457 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.813 3.187 25 H -0.200 1.200 26 H -0.198 1.198 27 H -0.197 1.197 28 O -0.106 6.106 29 H 0.142 0.858 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.178 0.822 33 H 0.187 0.813 34 H 0.259 0.741 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.046 0.954 43 H 0.136 0.864 44 H 0.081 0.919 45 H 0.229 0.771 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -24.533 1.287 2.263 24.671 hybrid contribution 1.415 -1.253 0.315 1.916 sum -23.118 0.034 2.578 23.262 Atomic orbital electron populations 1.20744 0.76243 1.07256 1.07192 1.29121 0.99543 0.78710 0.96671 1.74303 0.96271 1.27288 1.20061 1.74285 1.13179 1.10529 1.18045 1.27416 0.85687 0.91070 0.98722 1.20329 0.89287 1.02457 0.96426 1.20341 0.80779 0.77891 0.90512 1.90740 1.55506 1.53074 1.47434 1.45730 1.26408 1.52508 1.10189 1.21423 0.96219 0.98613 0.82995 1.22032 0.90219 0.95185 0.96410 0.91309 1.21927 1.02117 0.94196 1.02155 1.61589 1.07732 1.02071 1.53276 1.22404 1.01767 0.90353 0.97616 1.21811 0.90526 0.98699 0.96610 1.20769 0.83285 0.85384 0.87444 1.90475 1.77690 1.29624 1.51873 1.41940 1.16503 1.28257 1.34746 1.19624 0.98692 1.12453 1.14959 0.90275 1.25961 0.99270 0.95868 1.00193 1.69665 1.26107 1.19201 1.41251 0.84989 0.77818 0.77846 0.78071 1.20004 1.19759 1.19744 1.84760 1.17368 1.38643 1.69821 0.85770 0.86809 0.86472 0.82206 0.81298 0.74060 0.89829 0.92547 0.90151 0.91633 0.91815 0.92447 0.91107 0.95420 0.86423 0.91868 0.77132 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.43 10.51 71.24 0.75 0.32 16 2 C 0.17 3.51 8.48 88.34 0.75 4.26 16 3 N -0.33 -9.44 12.22 -165.50 -2.02 -11.46 16 4 N -0.31 -9.59 12.22 -165.50 -2.02 -11.62 16 5 C 0.18 4.48 6.97 88.34 0.62 5.10 16 6 C -0.04 -0.74 6.33 29.10 0.18 -0.55 16 7 C 0.52 11.63 7.82 87.66 0.69 12.32 16 8 O -0.59 -18.52 16.03 -3.03 -0.05 -18.57 16 9 N -0.70 -13.35 5.05 -463.04 -2.34 -15.69 16 10 C 0.13 2.55 4.59 86.38 0.40 2.95 16 11 C 0.07 1.30 2.34 44.92 0.11 1.40 16 12 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 13 C -0.15 -2.24 8.88 71.98 0.64 -1.60 16 14 N -0.52 -13.77 3.73 -901.60 -3.36 -17.13 16 15 C 0.03 0.78 8.66 127.69 1.11 1.88 16 16 C 0.05 1.64 5.27 85.56 0.45 2.09 16 17 C 0.44 19.40 7.45 87.66 0.65 20.05 16 18 O -0.61 -31.05 13.93 -3.08 -0.04 -31.09 16 19 N -0.58 -28.00 5.29 -306.99 -1.62 -29.62 16 20 C -0.33 -17.91 9.68 84.04 0.81 -17.10 16 21 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 22 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 23 N -0.92 -48.45 13.05 21.66 0.28 -48.17 16 24 Si 0.99 42.08 29.55 68.60 2.03 44.11 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 26 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 28 O -0.23 -5.06 10.87 -3.60 -0.04 -5.10 16 29 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.11 0.41 8.14 -2.39 -0.02 0.40 16 31 H 0.12 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.16 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.17 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.42 7.45 7.42 -92.72 -0.69 6.76 16 35 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 1.26 6.71 -2.39 -0.02 1.24 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.06 1.02 7.31 -2.39 -0.02 1.00 16 39 H 0.06 1.01 6.21 -2.39 -0.01 0.99 16 40 H 0.06 2.17 5.80 -2.39 -0.01 2.16 16 41 H 0.07 1.94 6.48 -2.39 -0.02 1.92 16 42 H 0.03 0.72 8.14 -2.38 -0.02 0.71 16 43 H 0.12 3.01 5.85 -2.39 -0.01 2.99 16 44 H 0.06 1.75 8.12 -2.39 -0.02 1.73 16 45 H 0.40 18.28 7.90 -92.71 -0.73 17.54 16 46 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 Total: -1.00 -80.51 386.30 -1.95 -82.47 By element: Atomic # 1 Polarization: 31.34 SS G_CDS: -0.38 Total: 30.97 kcal Atomic # 6 Polarization: 23.29 SS G_CDS: 7.62 Total: 30.90 kcal Atomic # 7 Polarization: -122.60 SS G_CDS: -11.09 Total: -133.69 kcal Atomic # 8 Polarization: -54.62 SS G_CDS: -0.13 Total: -54.75 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -80.51 -1.95 -82.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570709262.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.138 kcal (2) G-P(sol) polarization free energy of solvation -80.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds