Wall clock time and date at job start Tue Mar 31 2020 22:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39313 * 119.06136 * 2 1 4 4 C 1.38859 * 119.57987 * 180.25788 * 3 2 1 5 5 C 1.47903 * 121.11304 * 179.77409 * 4 3 2 6 6 O 1.21537 * 120.00155 * 174.16890 * 5 4 3 7 7 N 1.34780 * 119.99749 * 354.16793 * 5 4 3 8 8 C 1.46502 * 119.99767 * 179.97438 * 7 5 4 9 9 H 1.08996 * 112.84811 * 23.80741 * 8 7 5 10 10 C 1.53783 * 113.61292 * 155.00115 * 8 7 5 11 11 C 1.53783 * 87.07978 * 89.11611 * 10 8 7 12 12 H 1.08994 * 113.61549 * 270.88210 * 11 10 8 13 13 C 1.53001 * 113.60923 * 139.98041 * 11 10 8 14 14 N 1.46502 * 109.46715 * 174.99772 * 13 11 10 15 15 C 1.36936 * 120.00055 * 179.97438 * 14 13 11 16 16 H 1.08011 * 119.99701 * 0.02562 * 15 14 13 17 17 C 1.38809 * 120.00321 * 180.02562 * 15 14 13 18 18 N 1.31616 * 120.00242 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99990 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.46924 * 89.99811 * 19 17 15 21 21 H 1.48495 * 109.47380 * 210.00182 * 19 17 15 22 22 H 1.48497 * 109.47149 * 330.00499 * 19 17 15 23 23 C 1.53775 * 113.61514 * 252.49732 * 8 7 5 24 24 C 1.41827 * 117.77602 * 359.50630 * 4 3 2 25 25 C 1.40096 * 121.37012 * 180.27721 * 24 4 3 26 26 C 1.36255 * 119.64172 * 179.97438 * 25 24 4 27 27 C 1.39349 * 120.83505 * 359.97438 * 26 25 24 28 28 C 1.36063 * 121.05011 * 0.02697 * 27 26 25 29 29 C 1.40709 * 119.74128 * 359.95333 * 28 27 26 30 30 N 1.30970 * 119.05878 * 179.75098 * 2 1 3 31 31 H 1.08998 * 109.47193 * 270.25063 * 1 2 3 32 32 H 1.08998 * 109.47069 * 30.25275 * 1 2 3 33 33 H 1.08997 * 109.47139 * 150.25526 * 1 2 3 34 34 H 1.08003 * 120.21054 * 0.02562 * 3 2 1 35 35 H 0.96999 * 120.00041 * 0.02562 * 7 5 4 36 36 H 1.08999 * 113.61420 * 334.57044 * 10 8 7 37 37 H 1.08997 * 113.61644 * 203.67096 * 10 8 7 38 38 H 1.08994 * 109.47129 * 294.99757 * 13 11 10 39 39 H 1.08998 * 109.47212 * 55.00673 * 13 11 10 40 40 H 0.96998 * 120.00433 * 0.02562 * 14 13 11 41 41 H 0.97002 * 120.00148 * 179.97438 * 18 17 15 42 42 H 1.09004 * 113.61194 * 156.33939 * 23 8 7 43 43 H 1.09002 * 113.61659 * 25.43446 * 23 8 7 44 44 H 1.07994 * 120.18180 * 359.94740 * 25 24 4 45 45 H 1.07991 * 119.58134 * 180.02562 * 26 25 24 46 46 H 1.08002 * 119.47620 * 179.97438 * 27 26 25 47 47 H 1.07994 * 120.12960 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1837 1.2177 0.0000 4 6 3.5722 1.2303 -0.0054 5 6 4.3250 2.5034 -0.0106 6 8 5.5360 2.4938 0.0916 7 7 3.6679 3.6743 -0.1287 8 6 4.4134 4.9354 -0.1333 9 1 5.4502 4.8130 -0.4467 10 6 3.6829 6.0803 -0.8546 11 6 3.0291 6.4100 0.4977 12 1 2.0960 5.8749 0.6736 13 6 2.9164 7.9106 0.7742 14 7 2.1781 8.1231 2.0216 15 6 1.9521 9.3952 2.4753 16 1 2.3178 10.2419 1.9132 17 6 1.2531 9.5966 3.6575 18 7 1.0354 10.8193 4.0932 19 14 0.6212 8.1322 4.6300 20 1 1.6552 7.7023 5.6052 21 1 -0.6153 8.5169 5.3568 22 1 0.3214 7.0132 3.7010 23 6 4.2511 5.7517 1.1598 24 6 4.2445 -0.0185 0.0000 25 6 5.6435 -0.0936 0.0009 26 6 6.2529 -1.3123 0.0067 27 6 5.5021 -2.4862 0.0123 28 6 4.1420 -2.4495 0.0116 29 6 3.4772 -1.2094 0.0061 30 7 2.1431 -1.1448 0.0050 31 1 -0.3633 0.0045 1.0276 32 1 -0.3633 0.8877 -0.5177 33 1 -0.3633 -0.8922 -0.5098 34 1 1.6318 2.1461 0.0004 35 1 2.7013 3.6820 -0.2099 36 1 2.9750 5.7391 -1.6101 37 1 4.3491 6.8619 -1.2198 38 1 3.9144 8.3392 0.8651 39 1 2.3873 8.3927 -0.0477 40 1 1.8500 7.3627 2.5267 41 1 0.5466 10.9601 4.9191 42 1 5.0727 6.4435 1.3454 43 1 4.0020 5.1453 2.0306 44 1 6.2357 0.8095 -0.0035 45 1 7.3313 -1.3690 0.0078 46 1 6.0080 -3.4405 0.0165 47 1 3.5749 -3.3686 0.0165 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571187212.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:23 Heat of formation + Delta-G solvation = 58.107408 kcal Electronic energy + Delta-G solvation = -28103.329856 eV Core-core repulsion = 24252.081811 eV Total energy + Delta-G solvation = -3851.248045 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.55104 -40.19093 -38.51077 -37.73351 -34.83558 -34.01118 -33.20324 -32.38881 -31.23370 -30.29166 -28.18381 -27.34924 -25.69875 -25.14303 -23.79441 -22.92621 -22.71321 -21.43438 -20.99609 -19.41533 -18.41622 -17.89802 -17.64479 -17.50482 -16.16103 -15.71991 -15.55725 -15.22906 -15.12316 -14.84154 -14.69273 -14.37157 -14.31254 -13.90155 -13.55334 -13.50171 -13.46175 -13.35227 -12.71214 -12.66522 -12.52352 -12.40592 -11.95060 -11.90718 -11.73790 -11.71091 -11.48637 -10.93061 -10.85335 -10.76245 -10.56250 -10.34661 -10.23624 -9.96760 -9.62548 -9.59633 -9.29961 -9.07607 -8.90423 -8.58000 -7.24130 -5.78529 -3.13770 -0.28437 0.40284 1.36685 2.37890 2.65571 2.77221 3.34172 3.37558 3.43060 3.72768 3.74596 4.01551 4.18449 4.33367 4.45815 4.48862 4.56193 4.58281 4.71558 4.79912 4.90832 4.91628 4.94506 5.00230 5.08523 5.20949 5.30874 5.35925 5.48712 5.50859 5.56300 5.62933 5.69815 5.71638 5.77099 5.80491 5.88024 5.98026 6.00838 6.01891 6.14540 6.15675 6.23912 6.43664 6.52809 6.64045 6.76239 7.11116 7.49454 7.80616 7.97971 8.40713 9.20013 9.92464 10.12379 11.39996 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014664 B = 0.002395 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.969332 B =11688.460540 C =12596.495422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.154 3.846 3 C -0.134 4.134 4 C -0.067 4.067 5 C 0.564 3.436 6 O -0.524 6.524 7 N -0.698 5.698 8 C 0.114 3.886 9 H 0.105 0.895 10 C -0.135 4.135 11 C -0.120 4.120 12 H 0.086 0.914 13 C 0.167 3.833 14 N -0.756 5.756 15 C -0.244 4.244 16 H 0.090 0.910 17 C 0.003 3.997 18 N -0.934 5.934 19 Si 0.886 3.114 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.278 1.278 23 C -0.141 4.141 24 C -0.071 4.071 25 C -0.099 4.099 26 C -0.121 4.121 27 C -0.096 4.096 28 C -0.101 4.101 29 C 0.130 3.870 30 N -0.460 5.460 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.143 0.857 35 H 0.402 0.598 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.029 0.971 39 H 0.027 0.973 40 H 0.360 0.640 41 H 0.259 0.741 42 H 0.096 0.904 43 H 0.067 0.933 44 H 0.169 0.831 45 H 0.129 0.871 46 H 0.130 0.870 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.388 -27.316 -12.802 30.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.002 3.998 3 C -0.155 4.155 4 C -0.078 4.078 5 C 0.351 3.649 6 O -0.401 6.401 7 N -0.348 5.348 8 C 0.009 3.991 9 H 0.123 0.877 10 C -0.174 4.174 11 C -0.139 4.139 12 H 0.104 0.896 13 C 0.040 3.960 14 N -0.401 5.401 15 C -0.374 4.374 16 H 0.107 0.893 17 C -0.193 4.193 18 N -0.583 5.583 19 Si 0.716 3.284 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.205 1.205 23 C -0.179 4.179 24 C -0.074 4.074 25 C -0.117 4.117 26 C -0.139 4.139 27 C -0.116 4.116 28 C -0.119 4.119 29 C 0.008 3.992 30 N -0.170 5.170 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.161 0.839 35 H 0.238 0.762 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.047 0.953 39 H 0.045 0.955 40 H 0.192 0.808 41 H 0.069 0.931 42 H 0.114 0.886 43 H 0.086 0.914 44 H 0.186 0.814 45 H 0.147 0.853 46 H 0.148 0.852 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.878 -27.872 -12.721 31.196 hybrid contribution -0.658 -0.148 0.890 1.117 sum 5.220 -28.020 -11.831 30.860 Atomic orbital electron populations 1.20825 0.87896 1.04061 1.03770 1.21428 0.97414 0.87536 0.93453 1.22289 0.93497 0.99997 0.99722 1.20334 0.93641 0.93341 1.00494 1.18012 0.87112 0.83203 0.76566 1.90597 1.13532 1.86489 1.49514 1.45609 1.10787 1.05247 1.73196 1.22033 0.96800 0.81864 0.98382 0.87730 1.23307 0.99868 0.97225 0.96980 1.22837 0.97534 0.98258 0.95223 0.89577 1.20614 0.95407 0.90961 0.89049 1.42695 1.67310 1.05153 1.24932 1.19073 1.29520 0.84003 1.04787 0.89254 1.24684 1.00692 0.95970 0.97947 1.69701 1.46175 1.18743 1.23637 0.86526 0.78583 0.82913 0.80336 1.21114 1.21744 1.20472 1.23466 0.99217 0.98633 0.96619 1.18653 0.95200 0.91965 1.01558 1.22058 0.93349 1.00526 0.95739 1.21113 1.00621 0.92241 0.99898 1.21009 0.93730 0.98948 0.97886 1.20770 0.94246 0.96036 1.00896 1.18850 0.88740 0.92992 0.98586 1.67643 1.08836 1.28838 1.11657 0.89742 0.90105 0.90004 0.83930 0.76228 0.91035 0.88219 0.95275 0.95510 0.80755 0.93065 0.88551 0.91381 0.81418 0.85302 0.85195 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.14 36.00 0.37 -0.30 16 2 C 0.15 1.44 6.78 -82.56 -0.56 0.88 16 3 C -0.13 -1.19 9.21 -38.95 -0.36 -1.55 16 4 C -0.07 -0.74 5.94 -104.34 -0.62 -1.36 16 5 C 0.56 6.66 7.75 -12.30 -0.10 6.57 16 6 O -0.52 -7.45 13.12 5.33 0.07 -7.38 16 7 N -0.70 -6.97 5.22 -53.94 -0.28 -7.25 16 8 C 0.11 1.24 4.32 -67.12 -0.29 0.95 16 9 H 0.10 1.20 7.46 -51.93 -0.39 0.81 16 10 C -0.14 -1.39 7.39 -25.92 -0.19 -1.58 16 11 C -0.12 -1.61 3.63 -89.81 -0.33 -1.93 16 12 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 13 C 0.17 3.03 6.10 -4.04 -0.02 3.01 16 14 N -0.76 -17.58 5.41 -59.91 -0.32 -17.90 16 15 C -0.24 -6.88 10.47 -15.06 -0.16 -7.03 16 16 H 0.09 2.70 8.06 -52.48 -0.42 2.27 16 17 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 18 N -0.93 -29.36 13.97 55.49 0.78 -28.58 16 19 Si 0.89 22.02 27.74 -169.99 -4.71 17.30 16 20 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 23 C -0.14 -1.82 7.43 -25.92 -0.19 -2.01 16 24 C -0.07 -0.84 5.76 -106.52 -0.61 -1.46 16 25 C -0.10 -1.10 9.25 -39.60 -0.37 -1.47 16 26 C -0.12 -1.06 9.96 -39.88 -0.40 -1.46 16 27 C -0.10 -0.75 9.94 -39.95 -0.40 -1.15 16 28 C -0.10 -0.94 9.98 -39.43 -0.39 -1.33 16 29 C 0.13 1.49 6.61 -84.87 -0.56 0.93 16 30 N -0.46 -5.16 10.19 -7.25 -0.07 -5.24 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.14 0.85 6.55 -52.48 -0.34 0.50 16 35 H 0.40 3.13 6.87 -40.82 -0.28 2.85 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.97 8.10 -51.93 -0.42 0.55 16 38 H 0.03 0.54 7.84 -51.93 -0.41 0.13 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.36 8.17 5.53 -40.82 -0.23 7.94 16 41 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 42 H 0.10 1.27 7.90 -51.93 -0.41 0.86 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.17 2.05 4.98 -52.49 -0.26 1.79 16 45 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 46 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 47 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 385.24 15.07 5.81 5.81 Total: -1.00 -34.71 385.24 -10.57 -45.28 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -6.55 Total: 8.28 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -5.28 Total: -10.32 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 0.10 Total: -58.97 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: 0.07 Total: -7.38 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.71 Total: 17.30 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.71 -10.57 -45.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571187212.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.389 kcal (2) G-P(sol) polarization free energy of solvation -34.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds