Wall clock time and date at job start Tue Mar 31 2020 22:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39313 * 119.06136 * 2 1 4 4 C 1.38859 * 119.57987 * 180.25788 * 3 2 1 5 5 C 1.47903 * 121.11304 * 179.77409 * 4 3 2 6 6 O 1.21537 * 120.00155 * 174.16890 * 5 4 3 7 7 N 1.34780 * 119.99749 * 354.16793 * 5 4 3 8 8 C 1.46502 * 119.99767 * 179.97438 * 7 5 4 9 9 H 1.08996 * 112.84811 * 23.80741 * 8 7 5 10 10 C 1.53783 * 113.61292 * 155.00115 * 8 7 5 11 11 C 1.53783 * 87.07978 * 89.11611 * 10 8 7 12 12 H 1.08994 * 113.61549 * 270.88210 * 11 10 8 13 13 C 1.53001 * 113.60923 * 139.98041 * 11 10 8 14 14 N 1.46502 * 109.46715 * 174.99772 * 13 11 10 15 15 C 1.36936 * 120.00055 * 179.97438 * 14 13 11 16 16 H 1.08011 * 119.99701 * 0.02562 * 15 14 13 17 17 C 1.38809 * 120.00321 * 180.02562 * 15 14 13 18 18 N 1.31616 * 120.00242 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99990 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.46924 * 89.99811 * 19 17 15 21 21 H 1.48495 * 109.47380 * 210.00182 * 19 17 15 22 22 H 1.48497 * 109.47149 * 330.00499 * 19 17 15 23 23 C 1.53775 * 113.61514 * 252.49732 * 8 7 5 24 24 C 1.41827 * 117.77602 * 359.50630 * 4 3 2 25 25 C 1.40096 * 121.37012 * 180.27721 * 24 4 3 26 26 C 1.36255 * 119.64172 * 179.97438 * 25 24 4 27 27 C 1.39349 * 120.83505 * 359.97438 * 26 25 24 28 28 C 1.36063 * 121.05011 * 0.02697 * 27 26 25 29 29 C 1.40709 * 119.74128 * 359.95333 * 28 27 26 30 30 N 1.30970 * 119.05878 * 179.75098 * 2 1 3 31 31 H 1.08998 * 109.47193 * 270.25063 * 1 2 3 32 32 H 1.08998 * 109.47069 * 30.25275 * 1 2 3 33 33 H 1.08997 * 109.47139 * 150.25526 * 1 2 3 34 34 H 1.08003 * 120.21054 * 0.02562 * 3 2 1 35 35 H 0.96999 * 120.00041 * 0.02562 * 7 5 4 36 36 H 1.08999 * 113.61420 * 334.57044 * 10 8 7 37 37 H 1.08997 * 113.61644 * 203.67096 * 10 8 7 38 38 H 1.08994 * 109.47129 * 294.99757 * 13 11 10 39 39 H 1.08998 * 109.47212 * 55.00673 * 13 11 10 40 40 H 0.96998 * 120.00433 * 0.02562 * 14 13 11 41 41 H 0.97002 * 120.00148 * 179.97438 * 18 17 15 42 42 H 1.09004 * 113.61194 * 156.33939 * 23 8 7 43 43 H 1.09002 * 113.61659 * 25.43446 * 23 8 7 44 44 H 1.07994 * 120.18180 * 359.94740 * 25 24 4 45 45 H 1.07991 * 119.58134 * 180.02562 * 26 25 24 46 46 H 1.08002 * 119.47620 * 179.97438 * 27 26 25 47 47 H 1.07994 * 120.12960 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1837 1.2177 0.0000 4 6 3.5722 1.2303 -0.0054 5 6 4.3250 2.5034 -0.0106 6 8 5.5360 2.4938 0.0916 7 7 3.6679 3.6743 -0.1287 8 6 4.4134 4.9354 -0.1333 9 1 5.4502 4.8130 -0.4467 10 6 3.6829 6.0803 -0.8546 11 6 3.0291 6.4100 0.4977 12 1 2.0960 5.8749 0.6736 13 6 2.9164 7.9106 0.7742 14 7 2.1781 8.1231 2.0216 15 6 1.9521 9.3952 2.4753 16 1 2.3178 10.2419 1.9132 17 6 1.2531 9.5966 3.6575 18 7 1.0354 10.8193 4.0932 19 14 0.6212 8.1322 4.6300 20 1 1.6552 7.7023 5.6052 21 1 -0.6153 8.5169 5.3568 22 1 0.3214 7.0132 3.7010 23 6 4.2511 5.7517 1.1598 24 6 4.2445 -0.0185 0.0000 25 6 5.6435 -0.0936 0.0009 26 6 6.2529 -1.3123 0.0067 27 6 5.5021 -2.4862 0.0123 28 6 4.1420 -2.4495 0.0116 29 6 3.4772 -1.2094 0.0061 30 7 2.1431 -1.1448 0.0050 31 1 -0.3633 0.0045 1.0276 32 1 -0.3633 0.8877 -0.5177 33 1 -0.3633 -0.8922 -0.5098 34 1 1.6318 2.1461 0.0004 35 1 2.7013 3.6820 -0.2099 36 1 2.9750 5.7391 -1.6101 37 1 4.3491 6.8619 -1.2198 38 1 3.9144 8.3392 0.8651 39 1 2.3873 8.3927 -0.0477 40 1 1.8500 7.3627 2.5267 41 1 0.5466 10.9601 4.9191 42 1 5.0727 6.4435 1.3454 43 1 4.0020 5.1453 2.0306 44 1 6.2357 0.8095 -0.0035 45 1 7.3313 -1.3690 0.0078 46 1 6.0080 -3.4405 0.0165 47 1 3.5749 -3.3686 0.0165 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571187212.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:22 Heat of formation + Delta-G solvation = 35.638772 kcal Electronic energy + Delta-G solvation = -28104.304169 eV Core-core repulsion = 24252.081811 eV Total energy + Delta-G solvation = -3852.222358 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.30349 -41.08066 -39.49805 -38.40245 -36.51338 -34.95507 -34.23663 -33.16620 -33.00635 -31.04782 -28.98400 -28.65107 -26.64713 -26.03313 -24.93392 -24.06036 -23.50137 -22.88913 -21.83705 -20.55206 -19.51833 -19.06759 -18.62310 -18.34762 -17.07280 -16.66766 -16.48375 -16.37218 -16.09478 -15.94057 -15.72467 -15.55920 -15.38885 -14.99860 -14.66122 -14.46842 -14.36269 -14.09427 -13.93912 -13.83447 -13.49921 -13.38563 -13.11198 -13.02572 -12.76128 -12.61375 -12.37651 -12.33591 -12.16522 -11.87749 -11.73410 -11.62208 -11.43824 -11.42229 -11.19328 -10.90834 -10.41195 -10.19522 -9.75100 -9.30618 -9.27012 -8.02689 -5.35545 -1.01631 -0.29129 0.61756 1.36348 1.41218 1.48387 1.62552 1.82618 2.00880 2.48368 3.01563 3.11364 3.28172 3.28701 3.46394 3.50564 3.57376 3.63734 3.79916 3.84809 3.92058 4.09820 4.12140 4.15275 4.35180 4.38638 4.41492 4.52315 4.63801 4.72319 4.79341 4.82043 4.83510 4.85333 4.89752 4.98483 5.01047 5.06953 5.11807 5.18139 5.24964 5.30535 5.34617 5.46388 5.51938 5.63002 5.76843 5.85442 6.21715 6.31910 6.78190 6.98352 7.09122 7.86476 8.05088 9.19024 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014664 B = 0.002395 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.969332 B =11688.460540 C =12596.495422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.145 3.855 3 C -0.122 4.122 4 C -0.087 4.087 5 C 0.564 3.436 6 O -0.555 6.555 7 N -0.687 5.687 8 C 0.124 3.876 9 H 0.100 0.900 10 C -0.117 4.117 11 C -0.115 4.115 12 H 0.097 0.903 13 C 0.161 3.839 14 N -0.758 5.758 15 C -0.234 4.234 16 H 0.055 0.945 17 C -0.068 4.068 18 N -0.986 5.986 19 Si 0.958 3.042 20 H -0.283 1.283 21 H -0.296 1.296 22 H -0.246 1.246 23 C -0.145 4.145 24 C -0.092 4.092 25 C -0.125 4.125 26 C -0.115 4.115 27 C -0.091 4.091 28 C -0.110 4.110 29 C 0.107 3.893 30 N -0.478 5.478 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.174 0.826 35 H 0.415 0.585 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.024 0.976 39 H 0.026 0.974 40 H 0.366 0.634 41 H 0.257 0.743 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.153 0.847 45 H 0.151 0.849 46 H 0.164 0.836 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.539 -30.114 -13.674 33.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.008 4.008 3 C -0.143 4.143 4 C -0.098 4.098 5 C 0.352 3.648 6 O -0.434 6.434 7 N -0.338 5.338 8 C 0.019 3.981 9 H 0.118 0.882 10 C -0.155 4.155 11 C -0.134 4.134 12 H 0.115 0.885 13 C 0.036 3.964 14 N -0.403 5.403 15 C -0.365 4.365 16 H 0.073 0.927 17 C -0.260 4.260 18 N -0.636 5.636 19 Si 0.785 3.215 20 H -0.209 1.209 21 H -0.223 1.223 22 H -0.170 1.170 23 C -0.184 4.184 24 C -0.095 4.095 25 C -0.143 4.143 26 C -0.133 4.133 27 C -0.110 4.110 28 C -0.128 4.128 29 C -0.015 4.015 30 N -0.188 5.188 31 H 0.110 0.890 32 H 0.122 0.878 33 H 0.100 0.900 34 H 0.192 0.808 35 H 0.253 0.747 36 H 0.113 0.887 37 H 0.125 0.875 38 H 0.042 0.958 39 H 0.044 0.956 40 H 0.199 0.801 41 H 0.066 0.934 42 H 0.107 0.893 43 H 0.077 0.923 44 H 0.170 0.830 45 H 0.169 0.831 46 H 0.182 0.818 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.029 -30.706 -13.645 33.976 hybrid contribution -0.329 0.767 1.098 1.379 sum 4.701 -29.939 -12.547 32.800 Atomic orbital electron populations 1.20930 0.85551 1.05235 1.04573 1.22020 0.98948 0.87254 0.92549 1.22623 0.92713 1.01232 0.97722 1.20351 0.94577 0.92707 1.02195 1.18183 0.86813 0.83828 0.76002 1.90590 1.14908 1.86948 1.50979 1.45488 1.11379 1.04409 1.72485 1.21860 0.96985 0.82170 0.97127 0.88230 1.23237 0.99750 0.96689 0.95811 1.22787 0.98358 0.94602 0.97653 0.88465 1.20823 0.94180 0.94630 0.86799 1.42720 1.67734 1.03330 1.26538 1.19069 1.28062 0.85238 1.04168 0.92738 1.25562 1.01798 0.99111 0.99496 1.69893 1.47858 1.21527 1.24361 0.85367 0.77412 0.79878 0.78867 1.20902 1.22280 1.17030 1.23482 0.98845 0.98830 0.97252 1.18871 0.95642 0.92668 1.02297 1.22026 0.93391 1.00984 0.97948 1.21440 1.01919 0.91803 0.98163 1.21362 0.93297 0.99986 0.96353 1.21072 0.95069 0.95933 1.00758 1.19179 0.89132 0.93662 0.99496 1.67697 1.08828 1.29922 1.12384 0.88953 0.87773 0.90023 0.80823 0.74707 0.88673 0.87511 0.95830 0.95569 0.80127 0.93387 0.89274 0.92293 0.82984 0.83090 0.81799 0.83206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.14 71.24 0.72 -0.29 16 2 C 0.14 2.45 6.78 42.95 0.29 2.74 16 3 C -0.12 -1.92 9.21 22.68 0.21 -1.71 16 4 C -0.09 -1.86 5.94 -19.68 -0.12 -1.98 16 5 C 0.56 12.87 7.75 86.80 0.67 13.54 16 6 O -0.55 -15.94 13.12 -3.83 -0.05 -15.99 16 7 N -0.69 -12.17 5.22 -442.86 -2.31 -14.48 16 8 C 0.12 2.43 4.32 45.52 0.20 2.63 16 9 H 0.10 2.15 7.46 -2.39 -0.02 2.13 16 10 C -0.12 -2.03 7.39 31.12 0.23 -1.80 16 11 C -0.12 -2.79 3.63 -10.27 -0.04 -2.83 16 12 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 13 C 0.16 5.66 6.10 86.38 0.53 6.18 16 14 N -0.76 -34.33 5.41 -343.45 -1.86 -36.19 16 15 C -0.23 -13.33 10.47 84.03 0.88 -12.45 16 16 H 0.05 3.41 8.06 -2.90 -0.02 3.39 16 17 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 18 N -0.99 -63.40 13.97 21.65 0.30 -63.10 16 19 Si 0.96 45.03 27.74 68.60 1.90 46.94 16 20 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 21 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 22 H -0.25 -10.13 6.52 99.48 0.65 -9.48 16 23 C -0.15 -3.52 7.43 31.12 0.23 -3.29 16 24 C -0.09 -2.19 5.76 -21.09 -0.12 -2.31 16 25 C -0.13 -2.85 9.25 22.26 0.21 -2.64 16 26 C -0.12 -1.93 9.96 22.08 0.22 -1.71 16 27 C -0.09 -1.26 9.94 22.03 0.22 -1.04 16 28 C -0.11 -1.93 9.98 22.37 0.22 -1.70 16 29 C 0.11 2.40 6.61 40.33 0.27 2.66 16 30 N -0.48 -10.30 10.19 -176.84 -1.80 -12.10 16 31 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.10 0.50 8.07 -2.39 -0.02 0.48 16 33 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.17 1.42 6.55 -2.91 -0.02 1.41 16 35 H 0.41 5.04 6.87 -92.71 -0.64 4.41 16 36 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.11 1.77 8.10 -2.39 -0.02 1.75 16 38 H 0.02 0.86 7.84 -2.39 -0.02 0.84 16 39 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.37 15.67 5.53 -92.71 -0.51 15.16 16 41 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 42 H 0.09 2.28 7.90 -2.38 -0.02 2.26 16 43 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 44 H 0.15 3.91 4.98 -2.91 -0.01 3.89 16 45 H 0.15 1.71 8.06 -2.92 -0.02 1.69 16 46 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 47 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -78.18 385.24 1.27 -76.91 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: -0.20 Total: 27.58 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 5.29 Total: -9.57 kcal Atomic # 7 Polarization: -120.20 SS G_CDS: -5.67 Total: -125.87 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.05 Total: -15.99 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.90 Total: 46.94 kcal Total: -78.18 1.27 -76.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571187212.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.547 kcal (2) G-P(sol) polarization free energy of solvation -78.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds