Wall clock time and date at job start Tue Mar 31 2020 22:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47258 * 2 1 4 4 C 1.53002 * 109.46834 * 239.99635 * 2 1 3 5 5 C 1.50704 * 109.46719 * 60.00676 * 4 2 1 6 6 H 1.07993 * 120.00386 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99563 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00398 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99903 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47106 * 59.99771 * 9 7 5 11 11 H 1.48500 * 109.47224 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46982 * 299.99850 * 9 7 5 13 13 C 1.53003 * 109.46547 * 120.00295 * 2 1 3 14 14 N 1.46501 * 109.47194 * 299.99201 * 13 2 1 15 15 C 1.34773 * 119.99781 * 180.02562 * 14 13 2 16 16 O 1.21587 * 120.00274 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99644 * 180.02562 * 15 14 13 18 18 C 1.46500 * 120.00004 * 179.97438 * 17 15 14 19 19 C 1.53006 * 109.47139 * 180.02562 * 18 17 15 20 20 N 1.46500 * 109.46819 * 180.02562 * 19 18 17 21 21 C 1.34784 * 126.58671 * 125.00434 * 20 19 18 22 22 C 1.36668 * 106.83741 * 180.23977 * 21 20 19 23 23 C 1.47378 * 125.78024 * 179.73707 * 22 21 20 24 24 O 1.21518 * 120.00371 * 359.97438 * 23 22 21 25 25 O 1.34755 * 119.99812 * 179.97438 * 23 22 21 26 26 N 1.34445 * 108.43336 * 359.59971 * 22 21 20 27 27 N 1.28756 * 109.51685 * 0.40680 * 26 22 21 28 28 H 1.08998 * 109.46963 * 300.00561 * 1 2 3 29 29 H 1.09000 * 109.46810 * 59.99520 * 1 2 3 30 30 H 1.08996 * 109.47855 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46927 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.47165 * 299.99425 * 3 2 1 33 33 H 1.09001 * 109.47005 * 60.00284 * 3 2 1 34 34 H 1.08999 * 109.46903 * 180.02562 * 4 2 1 35 35 H 1.08995 * 109.47362 * 300.00266 * 4 2 1 36 36 H 0.97000 * 120.00672 * 180.02562 * 8 7 5 37 37 H 1.09008 * 109.46579 * 179.97438 * 13 2 1 38 38 H 1.08995 * 109.47611 * 59.99757 * 13 2 1 39 39 H 0.96996 * 119.99379 * 0.02562 * 14 13 2 40 40 H 0.97000 * 120.00299 * 0.02562 * 17 15 14 41 41 H 1.08994 * 109.46918 * 60.00322 * 18 17 15 42 42 H 1.08997 * 109.47202 * 300.00019 * 18 17 15 43 43 H 1.08994 * 109.47097 * 60.00254 * 19 18 17 44 44 H 1.08997 * 109.46945 * 299.99999 * 19 18 17 45 45 H 1.08002 * 126.57778 * 359.96682 * 21 20 19 46 46 H 0.96698 * 116.99714 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8711 -0.4816 -3.7319 8 7 2.6279 -1.5504 -3.8526 9 14 1.2480 0.3986 -5.2572 10 1 1.7420 1.7990 -5.2571 11 1 1.7440 -0.3007 -6.4697 12 1 -0.2370 0.3976 -5.2572 13 6 2.0399 -0.7214 1.2493 14 7 1.5516 -0.0307 2.4455 15 6 1.8776 -0.4909 3.6695 16 8 2.5772 -1.4791 3.7811 17 7 1.4280 0.1442 4.7699 18 6 1.7818 -0.3564 6.1005 19 6 1.1476 0.5385 7.1674 20 7 1.5019 0.0382 8.4979 21 6 2.0936 0.7365 9.4874 22 6 2.2401 -0.1193 10.5429 23 6 2.8469 0.2134 11.8441 24 8 3.2708 1.3338 12.0483 25 8 2.9317 -0.7250 12.8075 26 7 1.7341 -1.3151 10.1941 27 7 1.2906 -1.2588 8.9867 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1299 -0.7218 -1.2490 35 1 1.6766 -1.7490 -1.2492 36 1 2.8629 -1.8815 -4.7336 37 1 3.1299 -0.7218 1.2491 38 1 1.6765 -1.7490 1.2493 39 1 0.9938 0.7578 2.3564 40 1 0.8695 0.9323 4.6810 41 1 2.8656 -0.3474 6.2157 42 1 1.4126 -1.3755 6.2154 43 1 0.0638 0.5291 7.0520 44 1 1.5164 1.5577 7.0527 45 1 2.3979 1.7721 9.4514 46 1 3.3380 -0.4599 13.6440 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609673852.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:42 Heat of formation + Delta-G solvation = -32.705579 kcal Electronic energy + Delta-G solvation = -27954.352032 eV Core-core repulsion = 23688.316777 eV Total energy + Delta-G solvation = -4266.035255 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.85945 -40.34263 -40.06511 -37.51193 -36.59956 -36.37663 -34.26254 -33.64314 -32.14281 -31.73818 -29.83367 -27.15388 -26.56902 -26.28558 -25.11499 -24.59678 -22.86185 -22.44160 -21.54536 -20.94472 -19.19371 -18.57447 -18.08877 -17.74445 -17.03409 -16.79433 -16.41384 -16.18201 -15.90175 -15.55823 -15.23789 -14.82025 -14.70763 -14.36562 -14.11518 -14.05054 -13.72679 -13.17260 -13.06609 -12.83755 -12.79970 -12.46249 -12.12865 -12.08897 -12.07579 -11.77722 -11.33846 -11.20862 -11.04448 -11.03291 -10.90694 -10.67292 -10.44873 -10.30606 -10.24822 -9.99419 -9.92310 -9.46056 -9.25218 -8.97741 -8.70911 -8.38488 -6.02503 -4.04282 0.41883 0.98405 1.22240 2.41659 2.47475 2.64816 3.22687 3.29575 3.35531 3.36169 3.59902 3.67695 3.96396 4.11895 4.24935 4.37261 4.43043 4.47129 4.65293 5.12050 5.21860 5.32476 5.32812 5.43719 5.58353 5.63840 5.68875 5.89334 6.09717 6.10895 6.14219 6.21046 6.34835 6.51381 6.57521 6.69479 6.82311 7.01130 7.02659 7.08596 7.21592 7.47081 7.60679 7.72782 7.95360 7.99247 8.36900 8.60453 9.00245 9.58950 11.08799 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.042473 B = 0.001446 C = 0.001435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.078970 B =19352.802399 C =19505.847567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.073 4.073 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.146 3.854 14 N -0.733 5.733 15 C 0.703 3.297 16 O -0.587 6.587 17 N -0.752 5.752 18 C 0.129 3.871 19 C 0.110 3.890 20 N -0.355 5.355 21 C 0.111 3.889 22 C -0.095 4.095 23 C 0.579 3.421 24 O -0.513 6.513 25 O -0.496 6.496 26 N -0.179 5.179 27 N -0.047 5.047 28 H 0.027 0.973 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.027 0.973 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.261 0.739 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.395 0.605 40 H 0.396 0.604 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.111 0.889 44 H 0.116 0.884 45 H 0.212 0.788 46 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.833 9.146 28.630 30.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.552 4.552 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.023 3.977 14 N -0.389 5.389 15 C 0.402 3.598 16 O -0.464 6.464 17 N -0.411 5.411 18 C 0.003 3.997 19 C -0.011 4.011 20 N -0.138 5.138 21 C -0.047 4.047 22 C -0.232 4.232 23 C 0.421 3.579 24 O -0.401 6.401 25 O -0.306 6.306 26 N -0.054 5.054 27 N -0.028 5.028 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.229 0.771 40 H 0.230 0.770 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.129 0.871 44 H 0.134 0.866 45 H 0.228 0.772 46 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -3.704 6.897 27.893 28.970 hybrid contribution -0.200 2.391 -0.391 2.431 sum -3.903 9.288 27.501 29.289 Atomic orbital electron populations 1.21752 0.95250 1.01196 1.00124 1.20928 0.95500 0.95882 0.95032 1.21751 1.00565 0.95871 1.00121 1.19084 0.96393 0.95251 0.89375 1.21133 1.31352 1.12144 0.90527 0.92325 1.25011 0.95286 0.95063 0.99077 1.69950 1.36750 1.22987 1.23595 0.86707 0.79128 0.79741 0.82683 1.20353 1.21386 1.20336 1.21538 0.98762 0.95720 0.81711 1.45359 1.55926 1.33152 1.04414 1.15900 0.80533 0.82914 0.80443 1.90959 1.42392 1.27279 1.85806 1.44801 1.58109 1.33794 1.04350 1.21215 1.00618 0.98150 0.79708 1.22232 1.03189 0.99050 0.76669 1.50374 1.40688 1.10283 1.12482 1.23386 0.94117 1.00046 0.87112 1.20165 1.14950 0.92136 0.95952 1.19037 0.74663 0.81692 0.82514 1.90955 1.46134 1.22215 1.80798 1.84642 1.75729 1.43515 1.26753 1.74846 1.06075 1.19307 1.05213 1.82213 1.20716 0.95853 1.04028 0.95362 0.91451 0.93322 0.93351 0.91450 0.95365 0.96306 0.96291 0.92947 0.91889 0.91855 0.77068 0.77013 0.90652 0.89604 0.87067 0.86603 0.77185 0.72330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 8.05 37.16 0.30 -1.78 16 2 C -0.07 -1.31 0.54 -154.51 -0.08 -1.39 16 3 C -0.13 -2.06 8.05 37.16 0.30 -1.76 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.29 7.65 -34.44 -0.26 -13.56 16 6 H 0.06 1.45 5.68 -52.49 -0.30 1.15 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 9 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 C 0.15 2.45 4.56 -4.04 -0.02 2.44 16 14 N -0.73 -9.54 4.96 -65.22 -0.32 -9.86 16 15 C 0.70 9.51 8.57 -86.92 -0.74 8.77 16 16 O -0.59 -10.88 16.34 5.29 0.09 -10.80 16 17 N -0.75 -6.01 5.56 -65.23 -0.36 -6.38 16 18 C 0.13 0.94 5.88 -4.04 -0.02 0.92 16 19 C 0.11 0.35 6.65 -4.04 -0.03 0.32 16 20 N -0.35 -2.19 3.69 -61.05 -0.23 -2.41 16 21 C 0.11 0.60 11.27 -16.82 -0.19 0.41 16 22 C -0.10 -0.79 7.02 -83.57 -0.59 -1.38 16 23 C 0.58 4.60 8.33 34.45 0.29 4.88 16 24 O -0.51 -4.82 17.65 -19.28 -0.34 -5.16 16 25 O -0.50 -3.07 13.44 -40.64 -0.55 -3.61 16 26 N -0.18 -1.90 12.39 32.83 0.41 -1.50 16 27 N -0.05 -0.47 13.64 60.35 0.82 0.36 16 28 H 0.03 0.36 6.86 -51.93 -0.36 0.01 16 29 H 0.07 1.21 6.62 -51.93 -0.34 0.86 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 32 H 0.07 1.20 6.62 -51.93 -0.34 0.86 16 33 H 0.03 0.36 6.86 -51.93 -0.36 0.00 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.39 4.05 6.18 -40.82 -0.25 3.79 16 40 H 0.40 1.67 8.49 -40.82 -0.35 1.33 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.11 0.20 8.14 -51.93 -0.42 -0.23 16 44 H 0.12 -0.01 8.08 -51.93 -0.42 -0.43 16 45 H 0.21 0.33 8.06 -52.49 -0.42 -0.09 16 46 H 0.42 0.42 9.11 45.56 0.42 0.83 16 LS Contribution 392.03 15.07 5.91 5.91 Total: -1.00 -37.37 392.03 -5.78 -43.15 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -5.66 Total: -0.29 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -1.26 Total: 0.08 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 1.05 Total: -45.07 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.80 Total: -19.57 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.37 -5.78 -43.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609673852.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.448 kcal (2) G-P(sol) polarization free energy of solvation -37.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds