Wall clock time and date at job start Tue Mar 31 2020 22:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47258 * 2 1 4 4 C 1.53002 * 109.46834 * 239.99635 * 2 1 3 5 5 C 1.50704 * 109.46719 * 60.00676 * 4 2 1 6 6 H 1.07993 * 120.00386 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99563 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00398 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99903 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47106 * 59.99771 * 9 7 5 11 11 H 1.48500 * 109.47224 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46982 * 299.99850 * 9 7 5 13 13 C 1.53003 * 109.46547 * 120.00295 * 2 1 3 14 14 N 1.46501 * 109.47194 * 299.99201 * 13 2 1 15 15 C 1.34773 * 119.99781 * 180.02562 * 14 13 2 16 16 O 1.21587 * 120.00274 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99644 * 180.02562 * 15 14 13 18 18 C 1.46500 * 120.00004 * 179.97438 * 17 15 14 19 19 C 1.53006 * 109.47139 * 180.02562 * 18 17 15 20 20 N 1.46500 * 109.46819 * 180.02562 * 19 18 17 21 21 C 1.34784 * 126.58671 * 125.00434 * 20 19 18 22 22 C 1.36668 * 106.83741 * 180.23977 * 21 20 19 23 23 C 1.47378 * 125.78024 * 179.73707 * 22 21 20 24 24 O 1.21518 * 120.00371 * 359.97438 * 23 22 21 25 25 O 1.34755 * 119.99812 * 179.97438 * 23 22 21 26 26 N 1.34445 * 108.43336 * 359.59971 * 22 21 20 27 27 N 1.28756 * 109.51685 * 0.40680 * 26 22 21 28 28 H 1.08998 * 109.46963 * 300.00561 * 1 2 3 29 29 H 1.09000 * 109.46810 * 59.99520 * 1 2 3 30 30 H 1.08996 * 109.47855 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46927 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.47165 * 299.99425 * 3 2 1 33 33 H 1.09001 * 109.47005 * 60.00284 * 3 2 1 34 34 H 1.08999 * 109.46903 * 180.02562 * 4 2 1 35 35 H 1.08995 * 109.47362 * 300.00266 * 4 2 1 36 36 H 0.97000 * 120.00672 * 180.02562 * 8 7 5 37 37 H 1.09008 * 109.46579 * 179.97438 * 13 2 1 38 38 H 1.08995 * 109.47611 * 59.99757 * 13 2 1 39 39 H 0.96996 * 119.99379 * 0.02562 * 14 13 2 40 40 H 0.97000 * 120.00299 * 0.02562 * 17 15 14 41 41 H 1.08994 * 109.46918 * 60.00322 * 18 17 15 42 42 H 1.08997 * 109.47202 * 300.00019 * 18 17 15 43 43 H 1.08994 * 109.47097 * 60.00254 * 19 18 17 44 44 H 1.08997 * 109.46945 * 299.99999 * 19 18 17 45 45 H 1.08002 * 126.57778 * 359.96682 * 21 20 19 46 46 H 0.96698 * 116.99714 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8711 -0.4816 -3.7319 8 7 2.6279 -1.5504 -3.8526 9 14 1.2480 0.3986 -5.2572 10 1 1.7420 1.7990 -5.2571 11 1 1.7440 -0.3007 -6.4697 12 1 -0.2370 0.3976 -5.2572 13 6 2.0399 -0.7214 1.2493 14 7 1.5516 -0.0307 2.4455 15 6 1.8776 -0.4909 3.6695 16 8 2.5772 -1.4791 3.7811 17 7 1.4280 0.1442 4.7699 18 6 1.7818 -0.3564 6.1005 19 6 1.1476 0.5385 7.1674 20 7 1.5019 0.0382 8.4979 21 6 2.0936 0.7365 9.4874 22 6 2.2401 -0.1193 10.5429 23 6 2.8469 0.2134 11.8441 24 8 3.2708 1.3338 12.0483 25 8 2.9317 -0.7250 12.8075 26 7 1.7341 -1.3151 10.1941 27 7 1.2906 -1.2588 8.9867 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1299 -0.7218 -1.2490 35 1 1.6766 -1.7490 -1.2492 36 1 2.8629 -1.8815 -4.7336 37 1 3.1299 -0.7218 1.2491 38 1 1.6765 -1.7490 1.2493 39 1 0.9938 0.7578 2.3564 40 1 0.8695 0.9323 4.6810 41 1 2.8656 -0.3474 6.2157 42 1 1.4126 -1.3755 6.2154 43 1 0.0638 0.5291 7.0520 44 1 1.5164 1.5577 7.0527 45 1 2.3979 1.7721 9.4514 46 1 3.3380 -0.4599 13.6440 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609673852.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:41 Heat of formation + Delta-G solvation = -63.624179 kcal Electronic energy + Delta-G solvation = -27955.692763 eV Core-core repulsion = 23688.316777 eV Total energy + Delta-G solvation = -4267.375986 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.38757 -41.18743 -40.87290 -38.86102 -37.15506 -37.10696 -35.26705 -34.98491 -33.85636 -32.29473 -30.51434 -29.01497 -27.92026 -27.51728 -25.70355 -25.46389 -24.52212 -22.94847 -22.08099 -22.03160 -20.26509 -19.44172 -18.92207 -18.52283 -18.34943 -17.69672 -17.32612 -16.97260 -16.76775 -16.51426 -16.26982 -15.81062 -15.69900 -15.50378 -15.19858 -15.01646 -14.64997 -14.56932 -14.30802 -13.90534 -13.82449 -13.64754 -13.35410 -12.93246 -12.80245 -12.73818 -12.61326 -12.54807 -12.29401 -12.27242 -12.20235 -11.98147 -11.92965 -11.55944 -11.50290 -11.47468 -10.96261 -10.84329 -10.54893 -10.48845 -10.44563 -9.80054 -8.12038 -6.20071 -0.02561 0.36148 0.80130 1.44222 1.46135 1.53343 1.74711 1.91353 1.98202 2.13341 2.45960 3.10874 3.22497 3.27612 3.39950 3.65377 3.79825 4.00165 4.01431 4.09123 4.12639 4.22495 4.26049 4.60260 4.67666 4.72167 4.76300 4.77848 4.82967 5.00586 5.14057 5.16365 5.22029 5.37587 5.43028 5.47187 5.50356 5.54074 5.57723 5.60730 5.83923 5.92034 5.99008 6.32683 6.71700 6.95217 6.99729 7.11367 7.47850 7.57421 9.00176 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.042473 B = 0.001446 C = 0.001435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.078970 B =19352.802399 C =19505.847567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.065 4.065 3 C -0.120 4.120 4 C 0.039 3.961 5 C -0.514 4.514 6 H 0.075 0.925 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.959 3.041 10 H -0.266 1.266 11 H -0.293 1.293 12 H -0.266 1.266 13 C 0.161 3.839 14 N -0.719 5.719 15 C 0.700 3.300 16 O -0.642 6.642 17 N -0.723 5.723 18 C 0.130 3.870 19 C 0.115 3.885 20 N -0.348 5.348 21 C 0.136 3.864 22 C -0.122 4.122 23 C 0.584 3.416 24 O -0.532 6.532 25 O -0.502 6.502 26 N -0.211 5.211 27 N -0.087 5.087 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.034 0.966 31 H 0.035 0.965 32 H 0.054 0.946 33 H 0.074 0.926 34 H -0.015 1.015 35 H -0.016 1.016 36 H 0.259 0.741 37 H 0.042 0.958 38 H 0.041 0.959 39 H 0.413 0.587 40 H 0.421 0.579 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.135 0.865 44 H 0.165 0.835 45 H 0.255 0.745 46 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.622 13.049 29.746 32.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.065 4.065 3 C -0.177 4.177 4 C 0.001 3.999 5 C -0.552 4.552 6 H 0.093 0.907 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.784 3.216 10 H -0.191 1.191 11 H -0.219 1.219 12 H -0.191 1.191 13 C 0.036 3.964 14 N -0.376 5.376 15 C 0.399 3.601 16 O -0.524 6.524 17 N -0.382 5.382 18 C 0.004 3.996 19 C -0.005 4.005 20 N -0.132 5.132 21 C -0.022 4.022 22 C -0.259 4.259 23 C 0.427 3.573 24 O -0.421 6.421 25 O -0.315 6.315 26 N -0.086 5.086 27 N -0.067 5.067 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.003 0.997 35 H 0.003 0.997 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.251 0.749 40 H 0.259 0.741 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.152 0.848 44 H 0.182 0.818 45 H 0.271 0.729 46 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges -5.557 10.861 29.055 31.512 hybrid contribution 0.392 1.156 -0.661 1.388 sum -5.165 12.017 28.394 31.262 Atomic orbital electron populations 1.21686 0.93423 1.00893 1.01772 1.20718 0.96824 0.96429 0.92538 1.21683 0.99839 0.94417 1.01787 1.18977 0.94258 0.94186 0.92459 1.21578 1.30437 1.12146 0.91028 0.90748 1.25956 0.95679 0.95850 1.02759 1.70120 1.38761 1.25049 1.24094 0.85595 0.78952 0.78757 0.78296 1.19072 1.21931 1.19119 1.21044 0.97454 0.94924 0.82970 1.44931 1.56034 1.33391 1.03214 1.16089 0.80127 0.82483 0.81405 1.90937 1.44874 1.29924 1.86634 1.44422 1.57051 1.33675 1.03065 1.21161 1.00026 0.98044 0.80363 1.22492 1.04427 0.99794 0.73765 1.50530 1.39958 1.09301 1.13392 1.24043 0.91576 1.01045 0.85533 1.20554 1.15943 0.92340 0.97101 1.19017 0.74171 0.81491 0.82658 1.90939 1.47172 1.22775 1.81218 1.84613 1.75736 1.43393 1.27743 1.74809 1.07008 1.20883 1.05855 1.82139 1.22251 0.98154 1.04192 0.90754 0.92639 0.94688 0.94593 0.92663 0.90699 0.99671 0.99748 0.93254 0.93951 0.94097 0.74876 0.74068 0.92235 0.92516 0.84758 0.81755 0.72926 0.70041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.73 8.05 71.98 0.58 -3.15 16 2 C -0.06 -2.29 0.54 -52.18 -0.03 -2.32 16 3 C -0.12 -3.67 8.05 71.98 0.58 -3.09 16 4 C 0.04 1.93 4.04 29.85 0.12 2.05 16 5 C -0.51 -26.87 7.65 25.60 0.20 -26.67 16 6 H 0.07 3.59 5.68 -2.91 -0.02 3.57 16 7 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 8 N -0.94 -56.67 13.29 21.45 0.28 -56.38 16 9 Si 0.96 42.75 29.54 68.60 2.03 44.78 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 13 C 0.16 5.46 4.56 86.38 0.39 5.85 16 14 N -0.72 -17.09 4.96 -478.53 -2.37 -19.47 16 15 C 0.70 17.89 8.57 179.06 1.53 19.43 16 16 O -0.64 -24.20 16.34 -3.99 -0.07 -24.26 16 17 N -0.72 -9.30 5.56 -478.54 -2.66 -11.96 16 18 C 0.13 1.64 5.88 86.38 0.51 2.15 16 19 C 0.12 0.26 6.65 86.38 0.57 0.84 16 20 N -0.35 -3.42 3.69 -347.06 -1.28 -4.70 16 21 C 0.14 1.06 11.27 83.87 0.95 2.01 16 22 C -0.12 -1.90 7.02 40.78 0.29 -1.61 16 23 C 0.58 8.75 8.33 70.23 0.59 9.34 16 24 O -0.53 -9.22 17.65 19.78 0.35 -8.87 16 25 O -0.50 -5.96 13.44 -56.66 -0.76 -6.72 16 26 N -0.21 -4.50 12.39 -50.04 -0.62 -5.12 16 27 N -0.09 -1.70 13.64 37.02 0.51 -1.19 16 28 H 0.07 1.60 6.86 -2.39 -0.02 1.59 16 29 H 0.05 1.86 6.62 -2.39 -0.02 1.84 16 30 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.05 1.84 6.62 -2.39 -0.02 1.82 16 33 H 0.07 1.58 6.86 -2.39 -0.02 1.57 16 34 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 16 35 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 36 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 37 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 39 H 0.41 6.59 6.18 -92.71 -0.57 6.02 16 40 H 0.42 1.38 8.49 -92.71 -0.79 0.59 16 41 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.13 -0.19 8.14 -2.39 -0.02 -0.21 16 44 H 0.16 -1.12 8.08 -2.39 -0.02 -1.13 16 45 H 0.25 -0.47 8.06 -2.91 -0.02 -0.50 16 46 H 0.44 0.55 9.11 -74.06 -0.67 -0.12 16 Total: -1.00 -88.91 392.03 1.16 -87.75 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -0.98 Total: 1.19 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 6.74 Total: 4.96 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -6.15 Total: -98.83 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -0.48 Total: -39.85 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -88.91 1.16 -87.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609673852.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.126 kcal (2) G-P(sol) polarization free energy of solvation -88.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds