Wall clock time and date at job start Tue Mar 31 2020 22:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47008 * 2 1 4 4 C 1.52988 * 109.47590 * 239.99720 * 2 1 3 5 5 O 1.45202 * 109.46964 * 119.99510 * 2 1 3 6 6 C 1.34638 * 116.99776 * 60.00058 * 5 2 1 7 7 O 1.21513 * 119.99956 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99672 * 180.27362 * 6 5 2 9 9 C 1.46505 * 119.99722 * 179.72257 * 8 6 5 10 10 H 1.09008 * 109.46861 * 35.00772 * 9 8 6 11 11 C 1.52999 * 109.46803 * 155.00095 * 9 8 6 12 12 C 1.53002 * 109.47371 * 295.00127 * 11 9 8 13 13 C 1.50696 * 109.47086 * 179.97438 * 12 11 9 14 14 H 1.08007 * 120.00076 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00031 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00154 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00005 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47091 * 0.02562 * 17 15 13 19 19 H 1.48509 * 109.46835 * 120.00106 * 17 15 13 20 20 H 1.48500 * 109.47455 * 239.99786 * 17 15 13 21 21 C 1.50701 * 109.47491 * 275.00673 * 9 8 6 22 22 O 1.21284 * 119.99869 * 359.97438 * 21 9 8 23 23 N 1.34770 * 119.99725 * 180.02562 * 21 9 8 24 24 C 1.39535 * 119.99935 * 179.97438 * 23 21 9 25 25 C 1.35800 * 126.67366 * 359.68937 * 24 23 21 26 26 N 1.33278 * 108.87709 * 179.83188 * 25 24 23 27 27 N 1.28736 * 109.98232 * 0.43720 * 26 25 24 28 28 N 1.36269 * 126.67857 * 179.97438 * 24 23 21 29 29 H 0.97000 * 126.84179 * 359.97438 * 28 24 23 30 30 H 1.08997 * 109.47363 * 300.00806 * 1 2 3 31 31 H 1.09005 * 109.46795 * 60.00585 * 1 2 3 32 32 H 1.09001 * 109.46811 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46984 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46584 * 299.99377 * 3 2 1 35 35 H 1.08998 * 109.47272 * 59.99708 * 3 2 1 36 36 H 1.09001 * 109.47346 * 300.00043 * 4 2 1 37 37 H 1.09005 * 109.47300 * 60.00004 * 4 2 1 38 38 H 1.09004 * 109.47621 * 180.02562 * 4 2 1 39 39 H 0.97000 * 120.00483 * 359.73141 * 8 6 5 40 40 H 1.09003 * 109.47199 * 55.00642 * 11 9 8 41 41 H 1.09002 * 109.47200 * 175.00483 * 11 9 8 42 42 H 1.08994 * 109.47635 * 300.00376 * 12 11 9 43 43 H 1.09007 * 109.46673 * 60.00520 * 12 11 9 44 44 H 0.96995 * 120.00285 * 180.02562 * 16 15 13 45 45 H 0.97003 * 120.00700 * 359.97438 * 23 21 9 46 46 H 1.08003 * 125.56235 * 359.95612 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3385 7 8 0.9516 -2.5096 0.5037 8 7 2.0630 -2.6638 2.4199 9 6 1.6643 -4.0633 2.5893 10 1 1.6183 -4.5485 1.6142 11 6 2.6888 -4.7825 3.4690 12 6 4.0369 -4.8302 2.7470 13 6 5.0462 -5.5380 3.6138 14 1 4.7551 -5.9165 4.5826 15 6 6.3412 -5.7026 3.1702 16 7 6.6958 -5.2413 1.9908 17 14 7.5921 -6.5806 4.2443 18 1 6.9462 -7.0009 5.5137 19 1 8.1043 -7.7777 3.5301 20 1 8.7200 -5.6620 4.5427 21 6 0.3087 -4.1237 3.2448 22 8 -0.2675 -3.0986 3.5418 23 7 -0.2629 -5.3168 3.5019 24 6 -1.5178 -5.3728 4.1094 25 6 -2.2769 -4.3173 4.5016 26 7 -3.4087 -4.7751 5.0361 27 7 -3.4149 -6.0623 5.0175 28 7 -2.2178 -6.4974 4.4294 29 1 -1.9431 -7.4156 4.2801 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6768 -1.7489 -1.2491 37 1 1.6768 -0.2075 -2.1392 38 1 3.1301 -0.7216 -1.2488 39 1 2.6225 -2.2349 3.0862 40 1 2.7998 -4.2452 4.4109 41 1 2.3473 -5.7983 3.6682 42 1 3.9260 -5.3674 1.8052 43 1 4.3785 -3.8143 2.5479 44 1 7.6068 -5.3574 1.6785 45 1 0.1981 -6.1367 3.2648 46 1 -2.0082 -3.2766 4.3957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001633263775.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:00 Heat of formation + Delta-G solvation = -26.638196 kcal Electronic energy + Delta-G solvation = -30228.540795 eV Core-core repulsion = 25962.768642 eV Total energy + Delta-G solvation = -4265.772153 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.25888 -40.83248 -39.93938 -37.36870 -35.53164 -35.45889 -34.07070 -33.21153 -32.78804 -31.29538 -29.85005 -27.67757 -27.41227 -27.33760 -24.52061 -23.33556 -23.05376 -22.00509 -21.00752 -20.20155 -19.91210 -19.33196 -18.09834 -17.34726 -16.84792 -16.47528 -16.20132 -16.01335 -15.75933 -15.24020 -14.89239 -14.51622 -14.44886 -14.36318 -14.30966 -14.00468 -13.47114 -13.11915 -12.51369 -12.43701 -12.22996 -12.13398 -12.01952 -11.87501 -11.84971 -11.62911 -11.45663 -11.32220 -11.27455 -11.16642 -11.07437 -10.80861 -10.44429 -10.41844 -10.27868 -10.25412 -9.91207 -9.75512 -9.33816 -9.02458 -8.56456 -8.53751 -6.18322 -4.22993 1.07363 1.71867 2.26176 2.30346 2.70091 2.92021 3.18431 3.19448 3.28519 3.30431 4.22085 4.25403 4.34531 4.73074 4.77757 4.80651 4.88265 4.91859 4.99119 5.04735 5.18191 5.24220 5.44765 5.51434 5.53314 5.61837 5.67822 5.76042 5.84268 5.88641 5.97500 6.14455 6.22459 6.29820 6.33185 6.46229 6.57279 6.64627 6.68559 6.90407 7.41288 7.47731 7.56385 7.72482 7.77882 8.08761 8.15533 8.54381 8.83456 9.43073 10.92282 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.005886 B = 0.004553 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4755.741511 B = 6147.651311 C =10438.885388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.137 3.863 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.360 6.360 6 C 0.662 3.338 7 O -0.573 6.573 8 N -0.679 5.679 9 C 0.159 3.841 10 H 0.125 0.875 11 C -0.118 4.118 12 C 0.024 3.976 13 C -0.529 4.529 14 H 0.057 0.943 15 C 0.061 3.939 16 N -0.889 5.889 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.515 3.485 22 O -0.496 6.496 23 N -0.643 5.643 24 C 0.296 3.704 25 C -0.088 4.088 26 N -0.221 5.221 27 N -0.074 5.074 28 N -0.490 5.490 29 H 0.443 0.557 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.415 0.585 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.021 0.979 43 H 0.025 0.975 44 H 0.262 0.738 45 H 0.420 0.580 46 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.079 4.900 -2.504 12.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.275 6.275 6 C 0.416 3.584 7 O -0.462 6.462 8 N -0.337 5.337 9 C 0.050 3.950 10 H 0.142 0.858 11 C -0.156 4.156 12 C -0.013 4.013 13 C -0.567 4.567 14 H 0.075 0.925 15 C -0.141 4.141 16 N -0.528 5.528 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.209 1.209 21 C 0.301 3.699 22 O -0.366 6.366 23 N -0.294 5.294 24 C 0.066 3.934 25 C -0.248 4.248 26 N -0.091 5.091 27 N -0.055 5.055 28 N -0.212 5.212 29 H 0.288 0.712 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.252 0.748 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.040 0.960 43 H 0.044 0.956 44 H 0.072 0.928 45 H 0.257 0.743 46 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -12.991 5.231 -2.257 14.186 hybrid contribution 2.440 -1.179 0.039 2.710 sum -10.552 4.052 -2.219 11.519 Atomic orbital electron populations 1.22502 0.94111 1.05101 1.02199 1.22034 0.94227 0.91473 0.82264 1.21854 1.02405 0.92638 1.02878 1.22523 1.01887 1.03520 0.96212 1.86305 1.71524 1.23444 1.46212 1.17926 0.78045 0.80468 0.81945 1.90864 1.41314 1.70377 1.43672 1.44191 1.54366 1.11326 1.23792 1.21023 0.89283 0.82428 1.02280 0.85769 1.22116 0.96600 0.98517 0.98351 1.19125 0.88407 0.98208 0.95547 1.21162 0.94849 1.37502 1.03182 0.92470 1.24993 0.98532 0.95555 0.95033 1.69956 1.18775 1.45666 1.18362 0.86549 0.81472 0.79471 0.80578 1.19725 1.20971 1.20918 1.21949 0.88403 0.81791 0.77767 1.90622 1.63114 1.33400 1.49452 1.43131 1.15066 1.11572 1.59588 1.18981 0.87472 0.88887 0.98020 1.23571 0.91472 1.01060 1.08713 1.74241 1.19205 1.03104 1.12562 1.81986 0.98946 1.05374 1.19178 1.48207 1.16459 1.08399 1.48100 0.71186 0.92183 0.91445 0.89357 0.91342 0.90337 0.91529 0.89280 0.91417 0.91897 0.74836 0.91225 0.90738 0.96050 0.95637 0.92826 0.74280 0.77669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 8.37 37.16 0.31 -1.91 16 2 C 0.14 1.73 1.13 -90.62 -0.10 1.62 16 3 C -0.14 -1.36 8.85 37.16 0.33 -1.03 16 4 C -0.18 -2.30 8.37 37.15 0.31 -1.99 16 5 O -0.36 -5.49 9.94 -40.32 -0.40 -5.89 16 6 C 0.66 10.86 7.89 54.06 0.43 11.28 16 7 O -0.57 -10.08 11.54 -19.28 -0.22 -10.31 16 8 N -0.68 -10.29 4.06 -59.86 -0.24 -10.54 16 9 C 0.16 2.22 2.38 -69.08 -0.16 2.06 16 10 H 0.12 1.76 7.58 -51.92 -0.39 1.37 16 11 C -0.12 -1.79 4.64 -26.73 -0.12 -1.91 16 12 C 0.02 0.51 4.86 -27.88 -0.14 0.38 16 13 C -0.53 -13.01 9.11 -34.44 -0.31 -13.33 16 14 H 0.06 1.36 7.74 -52.48 -0.41 0.95 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.89 -24.55 13.29 55.43 0.74 -23.81 16 17 Si 0.89 19.93 29.54 -169.99 -5.02 14.91 16 18 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 C 0.51 6.92 7.15 -10.99 -0.08 6.85 16 22 O -0.50 -7.91 13.49 5.55 0.07 -7.84 16 23 N -0.64 -6.77 5.29 -11.29 -0.06 -6.83 16 24 C 0.30 3.54 8.16 -152.30 -1.24 2.30 16 25 C -0.09 -1.26 10.76 -17.80 -0.19 -1.46 16 26 N -0.22 -3.34 12.32 30.23 0.37 -2.97 16 27 N -0.07 -1.01 13.90 60.35 0.84 -0.17 16 28 N -0.49 -5.00 7.52 31.29 0.24 -4.77 16 29 H 0.44 2.69 8.96 -182.45 -1.64 1.06 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 1.30 5.88 -51.93 -0.31 1.00 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 1.32 5.88 -51.93 -0.31 1.02 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.42 5.93 8.71 -40.82 -0.36 5.57 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.07 0.97 7.43 -51.93 -0.39 0.59 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.03 0.58 7.75 -51.93 -0.40 0.18 16 44 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 45 H 0.42 3.09 8.18 -40.82 -0.33 2.75 16 46 H 0.21 3.09 5.83 -52.48 -0.31 2.79 16 LS Contribution 384.88 15.07 5.80 5.80 Total: -1.00 -32.48 384.88 -6.73 -39.21 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -7.77 Total: 8.83 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -1.07 Total: 4.36 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 1.88 Total: -49.08 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.55 Total: -24.03 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.48 -6.73 -39.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633263775.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.572 kcal (2) G-P(sol) polarization free energy of solvation -32.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds