Wall clock time and date at job start Tue Mar 31 2020 22:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47008 * 2 1 4 4 C 1.52988 * 109.47590 * 239.99720 * 2 1 3 5 5 O 1.45202 * 109.46964 * 119.99510 * 2 1 3 6 6 C 1.34638 * 116.99776 * 60.00058 * 5 2 1 7 7 O 1.21513 * 119.99956 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99672 * 180.27362 * 6 5 2 9 9 C 1.46505 * 119.99722 * 179.72257 * 8 6 5 10 10 H 1.09008 * 109.46861 * 35.00772 * 9 8 6 11 11 C 1.52999 * 109.46803 * 155.00095 * 9 8 6 12 12 C 1.53002 * 109.47371 * 295.00127 * 11 9 8 13 13 C 1.50696 * 109.47086 * 179.97438 * 12 11 9 14 14 H 1.08007 * 120.00076 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00031 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00154 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00005 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47091 * 0.02562 * 17 15 13 19 19 H 1.48509 * 109.46835 * 120.00106 * 17 15 13 20 20 H 1.48500 * 109.47455 * 239.99786 * 17 15 13 21 21 C 1.50701 * 109.47491 * 275.00673 * 9 8 6 22 22 O 1.21284 * 119.99869 * 359.97438 * 21 9 8 23 23 N 1.34770 * 119.99725 * 180.02562 * 21 9 8 24 24 C 1.39535 * 119.99935 * 179.97438 * 23 21 9 25 25 C 1.35800 * 126.67366 * 359.68937 * 24 23 21 26 26 N 1.33278 * 108.87709 * 179.83188 * 25 24 23 27 27 N 1.28736 * 109.98232 * 0.43720 * 26 25 24 28 28 N 1.36269 * 126.67857 * 179.97438 * 24 23 21 29 29 H 0.97000 * 126.84179 * 359.97438 * 28 24 23 30 30 H 1.08997 * 109.47363 * 300.00806 * 1 2 3 31 31 H 1.09005 * 109.46795 * 60.00585 * 1 2 3 32 32 H 1.09001 * 109.46811 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46984 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46584 * 299.99377 * 3 2 1 35 35 H 1.08998 * 109.47272 * 59.99708 * 3 2 1 36 36 H 1.09001 * 109.47346 * 300.00043 * 4 2 1 37 37 H 1.09005 * 109.47300 * 60.00004 * 4 2 1 38 38 H 1.09004 * 109.47621 * 180.02562 * 4 2 1 39 39 H 0.97000 * 120.00483 * 359.73141 * 8 6 5 40 40 H 1.09003 * 109.47199 * 55.00642 * 11 9 8 41 41 H 1.09002 * 109.47200 * 175.00483 * 11 9 8 42 42 H 1.08994 * 109.47635 * 300.00376 * 12 11 9 43 43 H 1.09007 * 109.46673 * 60.00520 * 12 11 9 44 44 H 0.96995 * 120.00285 * 180.02562 * 16 15 13 45 45 H 0.97003 * 120.00700 * 359.97438 * 23 21 9 46 46 H 1.08003 * 125.56235 * 359.95612 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3385 7 8 0.9516 -2.5096 0.5037 8 7 2.0630 -2.6638 2.4199 9 6 1.6643 -4.0633 2.5893 10 1 1.6183 -4.5485 1.6142 11 6 2.6888 -4.7825 3.4690 12 6 4.0369 -4.8302 2.7470 13 6 5.0462 -5.5380 3.6138 14 1 4.7551 -5.9165 4.5826 15 6 6.3412 -5.7026 3.1702 16 7 6.6958 -5.2413 1.9908 17 14 7.5921 -6.5806 4.2443 18 1 6.9462 -7.0009 5.5137 19 1 8.1043 -7.7777 3.5301 20 1 8.7200 -5.6620 4.5427 21 6 0.3087 -4.1237 3.2448 22 8 -0.2675 -3.0986 3.5418 23 7 -0.2629 -5.3168 3.5019 24 6 -1.5178 -5.3728 4.1094 25 6 -2.2769 -4.3173 4.5016 26 7 -3.4087 -4.7751 5.0361 27 7 -3.4149 -6.0623 5.0175 28 7 -2.2178 -6.4974 4.4294 29 1 -1.9431 -7.4156 4.2801 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6768 -1.7489 -1.2491 37 1 1.6768 -0.2075 -2.1392 38 1 3.1301 -0.7216 -1.2488 39 1 2.6225 -2.2349 3.0862 40 1 2.7998 -4.2452 4.4109 41 1 2.3473 -5.7983 3.6682 42 1 3.9260 -5.3674 1.8052 43 1 4.3785 -3.8143 2.5479 44 1 7.6068 -5.3574 1.6785 45 1 0.1981 -6.1367 3.2648 46 1 -2.0082 -3.2766 4.3957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001633263775.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:00 Heat of formation + Delta-G solvation = -50.209892 kcal Electronic energy + Delta-G solvation = -30229.562941 eV Core-core repulsion = 25962.768642 eV Total energy + Delta-G solvation = -4266.794299 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.28845 -42.00801 -41.05674 -38.51406 -36.87070 -36.52890 -35.29493 -34.80240 -33.80207 -32.75891 -31.00856 -29.12165 -28.32461 -28.26249 -26.11323 -24.43170 -24.13118 -23.22135 -22.42762 -21.33829 -21.03243 -20.32551 -19.28761 -18.71072 -18.06304 -17.87766 -17.43384 -17.06823 -16.89528 -16.48490 -16.35926 -15.88654 -15.55214 -15.47805 -15.35213 -15.16180 -14.68189 -14.41523 -14.14801 -13.67134 -13.31722 -13.15939 -13.06483 -12.89867 -12.87726 -12.82872 -12.77094 -12.57285 -12.50916 -12.42366 -12.35806 -12.29686 -11.84381 -11.79699 -11.40799 -11.37220 -11.32040 -11.12151 -11.10683 -10.51485 -10.25888 -9.59839 -8.15164 -6.24472 0.05631 0.70572 1.16515 1.21275 1.43442 1.46977 1.56466 1.62862 1.76406 2.20838 2.44735 3.13845 3.20917 3.23757 3.73524 3.78592 3.80518 3.84062 3.85365 3.96830 3.98355 4.04651 4.51266 4.57050 4.60290 4.64621 4.76724 4.79912 4.81798 4.87246 4.90934 5.04060 5.11753 5.19885 5.22363 5.32580 5.38862 5.57203 5.57550 5.73193 5.87205 5.89525 6.01584 6.25143 6.34497 6.69507 6.94153 7.05262 7.31608 7.45431 8.95981 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.005886 B = 0.004553 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4755.741511 B = 6147.651311 C =10438.885388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.123 3.877 3 C -0.135 4.135 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.656 3.344 7 O -0.589 6.589 8 N -0.681 5.681 9 C 0.166 3.834 10 H 0.124 0.876 11 C -0.101 4.101 12 C 0.028 3.972 13 C -0.534 4.534 14 H 0.068 0.932 15 C 0.005 3.995 16 N -0.930 5.930 17 Si 0.953 3.047 18 H -0.259 1.259 19 H -0.284 1.284 20 H -0.287 1.287 21 C 0.522 3.478 22 O -0.519 6.519 23 N -0.623 5.623 24 C 0.305 3.695 25 C -0.106 4.106 26 N -0.245 5.245 27 N -0.085 5.085 28 N -0.462 5.462 29 H 0.463 0.537 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.095 0.905 38 H 0.056 0.944 39 H 0.418 0.582 40 H 0.076 0.924 41 H 0.104 0.896 42 H -0.001 1.001 43 H 0.001 0.999 44 H 0.260 0.740 45 H 0.438 0.562 46 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.400 4.338 -1.931 12.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.087 3.913 3 C -0.192 4.192 4 C -0.237 4.237 5 O -0.284 6.284 6 C 0.410 3.590 7 O -0.480 6.480 8 N -0.339 5.339 9 C 0.057 3.943 10 H 0.142 0.858 11 C -0.139 4.139 12 C -0.009 4.009 13 C -0.572 4.572 14 H 0.086 0.914 15 C -0.193 4.193 16 N -0.571 5.571 17 Si 0.779 3.221 18 H -0.183 1.183 19 H -0.210 1.210 20 H -0.213 1.213 21 C 0.308 3.692 22 O -0.391 6.391 23 N -0.275 5.275 24 C 0.074 3.926 25 C -0.267 4.267 26 N -0.114 5.114 27 N -0.066 5.066 28 N -0.187 5.187 29 H 0.313 0.687 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.124 0.876 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.114 0.886 38 H 0.075 0.925 39 H 0.255 0.745 40 H 0.094 0.906 41 H 0.122 0.878 42 H 0.018 0.982 43 H 0.020 0.980 44 H 0.069 0.931 45 H 0.279 0.721 46 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -13.319 4.607 -1.664 14.191 hybrid contribution 2.528 -1.003 -0.189 2.727 sum -10.791 3.603 -1.853 11.527 Atomic orbital electron populations 1.22437 0.93786 1.03571 1.03502 1.22456 0.94691 0.92792 0.81381 1.21888 1.02313 0.90590 1.04436 1.22480 1.01421 1.02305 0.97539 1.86317 1.71667 1.22897 1.47559 1.18120 0.77994 0.80913 0.81991 1.90852 1.42077 1.70833 1.44250 1.44287 1.54270 1.11734 1.23625 1.20899 0.89424 0.81879 1.02067 0.85849 1.21881 0.93687 1.00593 0.97725 1.18970 0.91103 0.96002 0.94844 1.21685 0.95385 1.36453 1.03688 0.91408 1.25818 1.00808 0.96600 0.96121 1.70086 1.19071 1.47661 1.20256 0.85575 0.79032 0.78089 0.79374 1.18295 1.21035 1.21308 1.21655 0.88015 0.82162 0.77416 1.90635 1.63584 1.34564 1.50363 1.42834 1.14488 1.11580 1.58638 1.18761 0.87517 0.88827 0.97518 1.23517 0.92045 1.01403 1.09698 1.74228 1.19881 1.03762 1.13546 1.81913 1.00076 1.04946 1.19686 1.48063 1.15113 1.09067 1.46459 0.68725 0.92222 0.88761 0.92199 0.91513 0.87560 0.91169 0.91996 0.88649 0.92506 0.74535 0.90562 0.87760 0.98229 0.98016 0.93087 0.72116 0.78791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.17 8.37 71.98 0.60 -3.57 16 2 C 0.12 3.03 1.13 -10.80 -0.01 3.02 16 3 C -0.14 -2.39 8.85 71.98 0.64 -1.75 16 4 C -0.18 -4.45 8.37 71.98 0.60 -3.85 16 5 O -0.37 -11.43 9.94 -55.47 -0.55 -11.98 16 6 C 0.66 21.96 7.89 129.79 1.02 22.98 16 7 O -0.59 -21.27 11.54 19.80 0.23 -21.04 16 8 N -0.68 -20.85 4.06 -573.70 -2.33 -23.19 16 9 C 0.17 4.53 2.38 44.24 0.11 4.64 16 10 H 0.12 3.44 7.58 -2.38 -0.02 3.43 16 11 C -0.10 -2.90 4.64 30.59 0.14 -2.76 16 12 C 0.03 1.19 4.86 29.85 0.15 1.34 16 13 C -0.53 -25.82 9.11 25.60 0.23 -25.59 16 14 H 0.07 3.07 7.74 -2.91 -0.02 3.05 16 15 C 0.00 0.24 5.46 84.65 0.46 0.71 16 16 N -0.93 -52.17 13.29 21.45 0.28 -51.89 16 17 Si 0.95 40.49 29.54 68.60 2.03 42.51 16 18 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 19 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 21 C 0.52 13.39 7.15 87.66 0.63 14.02 16 22 O -0.52 -16.37 13.49 -3.04 -0.04 -16.41 16 23 N -0.62 -11.73 5.29 -308.02 -1.63 -13.35 16 24 C 0.30 6.71 8.16 130.91 1.07 7.78 16 25 C -0.11 -2.97 10.76 83.91 0.90 -2.07 16 26 N -0.24 -7.25 12.32 -58.26 -0.72 -7.97 16 27 N -0.09 -2.20 13.90 37.02 0.51 -1.69 16 28 N -0.46 -8.33 7.52 -54.92 -0.41 -8.74 16 29 H 0.46 4.15 8.96 -213.19 -1.91 2.24 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.06 1.78 5.88 -2.39 -0.01 1.77 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 1.88 5.88 -2.39 -0.01 1.87 16 37 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.42 12.10 8.71 -92.71 -0.81 11.29 16 40 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.10 2.39 7.43 -2.39 -0.02 2.37 16 42 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 43 H 0.00 0.07 7.75 -2.38 -0.02 0.05 16 44 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 45 H 0.44 5.02 8.18 -92.71 -0.76 4.26 16 46 H 0.20 5.91 5.83 -2.91 -0.02 5.89 16 Total: -1.00 -71.53 384.88 1.49 -70.04 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: -2.42 Total: 28.80 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 6.54 Total: 14.90 kcal Atomic # 7 Polarization: -102.53 SS G_CDS: -4.29 Total: -106.82 kcal Atomic # 8 Polarization: -49.07 SS G_CDS: -0.36 Total: -49.43 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.51 kcal Total: -71.53 1.49 -70.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633263775.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.831 kcal (2) G-P(sol) polarization free energy of solvation -71.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds