Wall clock time and date at job start Tue Mar 31 2020 22:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47103 * 2 1 4 4 C 1.53002 * 109.47497 * 240.00350 * 2 1 3 5 5 O 1.45195 * 109.47224 * 120.00099 * 2 1 3 6 6 C 1.34638 * 117.00135 * 60.00489 * 5 2 1 7 7 O 1.21513 * 119.99867 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00235 * 180.02562 * 6 5 2 9 9 C 1.46498 * 119.99828 * 180.27525 * 8 6 5 10 10 H 1.08995 * 109.47013 * 324.72129 * 9 8 6 11 11 C 1.53004 * 109.47065 * 204.72115 * 9 8 6 12 12 C 1.53003 * 109.46807 * 64.99542 * 11 9 8 13 13 C 1.50696 * 109.46809 * 180.02562 * 12 11 9 14 14 H 1.08001 * 120.00147 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00011 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99974 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00055 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47415 * 59.99814 * 17 15 13 19 19 H 1.48505 * 109.47372 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47033 * 299.99757 * 17 15 13 21 21 C 1.50705 * 109.47438 * 84.72236 * 9 8 6 22 22 O 1.21277 * 119.99708 * 359.97438 * 21 9 8 23 23 N 1.34773 * 119.99774 * 179.97438 * 21 9 8 24 24 N 1.40104 * 119.99625 * 179.97438 * 23 21 9 25 25 C 1.35312 * 125.86764 * 0.02562 * 24 23 21 26 26 C 1.35356 * 106.17358 * 180.02562 * 25 24 23 27 27 N 1.33760 * 106.49665 * 359.97438 * 26 25 24 28 28 N 1.28637 * 108.89036 * 359.74284 * 27 26 25 29 29 H 1.08996 * 109.47509 * 299.99293 * 1 2 3 30 30 H 1.09006 * 109.47298 * 59.99979 * 1 2 3 31 31 H 1.09003 * 109.46856 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47042 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47205 * 300.00164 * 3 2 1 34 34 H 1.09001 * 109.46587 * 60.00389 * 3 2 1 35 35 H 1.09003 * 109.46840 * 300.00288 * 4 2 1 36 36 H 1.09006 * 109.47115 * 59.99560 * 4 2 1 37 37 H 1.08995 * 109.47291 * 179.97438 * 4 2 1 38 38 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 39 39 H 1.08993 * 109.47108 * 184.99578 * 11 9 8 40 40 H 1.08998 * 109.47048 * 305.00090 * 11 9 8 41 41 H 1.08988 * 109.47304 * 300.00405 * 12 11 9 42 42 H 1.08998 * 109.46869 * 60.00439 * 12 11 9 43 43 H 0.97001 * 120.00424 * 180.02562 * 16 15 13 44 44 H 0.96996 * 120.00799 * 0.02562 * 23 21 9 45 45 H 1.08004 * 126.91518 * 359.97438 * 25 24 23 46 46 H 1.08006 * 126.74820 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3382 7 8 0.9510 -2.5095 0.5039 8 7 2.0673 -2.6655 2.4170 9 6 1.6788 -4.0686 2.5801 10 1 0.6695 -4.2132 2.1946 11 6 1.7158 -4.4389 4.0642 12 6 0.6542 -3.6345 4.8171 13 6 0.6911 -3.9988 6.2789 14 1 1.4011 -4.7304 6.6354 15 6 -0.1815 -3.3980 7.1614 16 7 -1.0463 -2.5075 6.7273 17 14 -0.1352 -3.8490 8.9735 18 1 1.2067 -3.5366 9.5273 19 1 -1.1665 -3.0694 9.7042 20 1 -0.4095 -5.3001 9.1296 21 6 2.6379 -4.9472 1.8190 22 8 3.5554 -4.4503 1.2009 23 7 2.4760 -6.2852 1.8254 24 7 3.3673 -7.1020 1.1174 25 6 4.4268 -6.6763 0.3913 26 6 5.0063 -7.7886 -0.1177 27 7 4.2829 -8.8265 0.3166 28 7 3.3225 -8.3866 1.0506 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6767 -1.7488 -1.2493 36 1 1.6767 -0.2073 -2.1393 37 1 3.1300 -0.7207 -1.2495 38 1 2.6269 -2.2366 3.0832 39 1 1.5135 -5.5038 4.1781 40 1 2.7009 -4.2106 4.4711 41 1 0.8565 -2.5697 4.7032 42 1 -0.3309 -3.8628 4.4102 43 1 -1.6600 -2.0845 7.3481 44 1 1.7420 -6.6826 2.3195 45 1 4.7455 -5.6546 0.2464 46 1 5.8809 -7.8298 -0.7502 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001636060482.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:13 Heat of formation + Delta-G solvation = 20.590820 kcal Electronic energy + Delta-G solvation = -30326.429373 eV Core-core repulsion = 26062.705223 eV Total energy + Delta-G solvation = -4263.724150 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.44368 -40.97146 -40.06661 -37.48017 -35.80504 -35.64408 -34.15151 -33.24414 -31.93804 -31.21381 -30.91397 -27.81104 -27.47284 -27.39703 -24.60915 -23.52552 -23.10709 -22.26136 -21.22043 -20.47672 -20.01684 -18.99107 -18.19387 -17.58348 -16.87274 -16.69571 -16.33444 -15.97037 -15.62473 -15.24195 -15.06881 -14.66976 -14.55988 -14.46149 -14.39056 -14.10166 -13.53769 -13.17340 -12.57291 -12.44880 -12.27834 -12.20478 -12.01031 -11.94351 -11.91699 -11.80911 -11.54220 -11.34348 -11.27666 -11.18283 -11.05109 -10.87405 -10.54657 -10.34993 -10.28684 -9.99659 -9.79607 -9.60571 -9.41556 -9.37918 -9.16703 -8.52820 -6.17726 -4.22600 0.70340 1.38149 2.13288 2.18464 2.40125 2.91070 3.23098 3.29046 3.30461 3.57721 4.14085 4.18089 4.32834 4.61943 4.66733 4.71735 4.85470 4.88197 4.96422 5.09211 5.15105 5.19419 5.29979 5.39159 5.47692 5.55072 5.61815 5.70385 5.78368 5.82673 5.91924 5.94332 6.07394 6.13732 6.26531 6.37995 6.48854 6.52429 6.56200 6.67561 7.39550 7.44648 7.45750 7.56974 7.77608 8.14996 8.29070 8.43854 8.83081 9.43466 10.92785 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.005937 B = 0.004586 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4715.282979 B = 6104.482901 C =10360.799238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.137 3.863 3 C -0.141 4.141 4 C -0.182 4.182 5 O -0.359 6.359 6 C 0.662 3.338 7 O -0.571 6.571 8 N -0.678 5.678 9 C 0.171 3.829 10 H 0.131 0.869 11 C -0.120 4.120 12 C 0.025 3.975 13 C -0.531 4.531 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.513 3.487 22 O -0.507 6.507 23 N -0.500 5.500 24 N -0.090 5.090 25 C -0.028 4.028 26 C -0.055 4.055 27 N -0.256 5.256 28 N -0.097 5.097 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.417 0.583 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.026 0.974 42 H 0.023 0.977 43 H 0.263 0.737 44 H 0.445 0.555 45 H 0.212 0.788 46 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.439 2.696 -13.972 16.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.239 4.239 5 O -0.274 6.274 6 C 0.416 3.584 7 O -0.460 6.460 8 N -0.336 5.336 9 C 0.060 3.940 10 H 0.149 0.851 11 C -0.158 4.158 12 C -0.012 4.012 13 C -0.569 4.569 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.201 1.201 21 C 0.299 3.701 22 O -0.378 6.378 23 N -0.255 5.255 24 N 0.034 4.966 25 C -0.180 4.180 26 C -0.214 4.214 27 N -0.124 5.124 28 N -0.078 5.078 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.254 0.746 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.044 0.956 42 H 0.041 0.959 43 H 0.073 0.927 44 H 0.290 0.710 45 H 0.229 0.771 46 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 6.809 1.784 -14.361 15.993 hybrid contribution 0.370 0.786 1.185 1.470 sum 7.179 2.570 -13.176 15.223 Atomic orbital electron populations 1.22528 0.93871 1.05265 1.02520 1.22055 0.94484 0.91438 0.82037 1.21856 1.02168 0.92635 1.03118 1.22504 1.01511 1.03502 0.96400 1.86307 1.71272 1.23447 1.46353 1.17936 0.78250 0.80500 0.81682 1.90877 1.41286 1.70644 1.43209 1.44213 1.55723 1.09850 1.23786 1.21027 0.96645 0.78161 0.98139 0.85109 1.22200 1.03828 1.02275 0.87536 1.19119 0.92348 0.95262 0.94438 1.21076 1.19023 1.24265 0.92527 0.92501 1.24984 0.95215 0.94857 0.98975 1.69935 1.20619 1.26956 1.35269 0.86644 0.77830 0.78616 0.84860 1.20184 1.21227 1.20137 1.22658 0.87192 0.79377 0.80878 1.90634 1.32135 1.72838 1.42170 1.45867 1.27099 1.02266 1.50277 1.46182 1.16553 1.03603 1.30269 1.24370 0.90244 1.03996 0.99411 1.23599 1.03718 0.87990 1.06087 1.75156 1.02356 1.25250 1.09602 1.78550 1.20393 0.89014 1.19865 0.91814 0.91351 0.89272 0.91541 0.90277 0.91282 0.89414 0.91353 0.92240 0.74639 0.90340 0.91050 0.95599 0.95878 0.92692 0.70953 0.77142 0.78555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 8.37 37.16 0.31 -1.93 16 2 C 0.14 1.66 1.13 -90.62 -0.10 1.56 16 3 C -0.14 -1.30 8.85 37.16 0.33 -0.97 16 4 C -0.18 -2.12 8.37 37.16 0.31 -1.81 16 5 O -0.36 -5.28 9.94 -40.32 -0.40 -5.68 16 6 C 0.66 10.54 7.87 54.06 0.43 10.96 16 7 O -0.57 -9.82 11.55 -19.28 -0.22 -10.04 16 8 N -0.68 -9.97 4.07 -59.86 -0.24 -10.22 16 9 C 0.17 2.38 2.38 -69.08 -0.16 2.22 16 10 H 0.13 1.83 7.58 -51.93 -0.39 1.43 16 11 C -0.12 -1.84 4.64 -26.73 -0.12 -1.96 16 12 C 0.03 0.54 4.86 -27.88 -0.14 0.40 16 13 C -0.53 -13.14 9.11 -34.44 -0.31 -13.45 16 14 H 0.06 1.36 7.74 -52.49 -0.41 0.95 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -24.60 13.29 55.43 0.74 -23.86 16 17 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 C 0.51 7.03 7.26 -10.98 -0.08 6.95 16 22 O -0.51 -7.85 13.44 5.56 0.07 -7.78 16 23 N -0.50 -6.23 6.49 31.22 0.20 -6.03 16 24 N -0.09 -1.27 4.54 30.52 0.14 -1.13 16 25 C -0.03 -0.37 10.50 -17.05 -0.18 -0.55 16 26 C -0.06 -0.65 12.05 -17.74 -0.21 -0.87 16 27 N -0.26 -3.78 12.41 30.24 0.38 -3.40 16 28 N -0.10 -1.48 13.34 60.35 0.81 -0.67 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 1.29 5.88 -51.93 -0.31 0.99 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 1.25 5.88 -51.93 -0.31 0.94 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.42 5.72 8.71 -40.82 -0.36 5.37 16 39 H 0.08 1.06 7.43 -51.93 -0.39 0.68 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.03 0.59 7.75 -51.94 -0.40 0.18 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.45 4.49 8.19 -182.60 -1.50 2.99 16 45 H 0.21 2.63 5.86 -52.48 -0.31 2.32 16 46 H 0.20 1.51 8.06 -52.48 -0.42 1.08 16 LS Contribution 385.43 15.07 5.81 5.81 Total: -1.00 -31.98 385.43 -5.50 -37.48 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -7.72 Total: 8.35 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -0.03 Total: 2.09 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 2.01 Total: -45.31 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.55 Total: -23.51 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.98 -5.50 -37.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001636060482.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.070 kcal (2) G-P(sol) polarization free energy of solvation -31.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds