Wall clock time and date at job start Tue Mar 31 2020 22:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00248 * 2 1 4 4 C 1.53007 * 109.47343 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.47070 * 180.02562 * 4 3 2 6 6 N 1.46502 * 109.47091 * 180.02562 * 5 4 3 7 7 C 1.34969 * 125.97661 * 124.99879 * 6 5 4 8 8 C 1.35242 * 107.85646 * 180.02562 * 7 6 5 9 9 C 1.50703 * 126.06309 * 179.97438 * 8 7 6 10 10 C 1.40394 * 107.87064 * 0.23169 * 8 7 6 11 11 N 1.40194 * 125.97447 * 179.76872 * 10 8 7 12 12 C 1.34776 * 120.00357 * 179.97438 * 11 10 8 13 13 O 1.21596 * 119.99759 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00482 * 180.02562 * 12 11 10 15 15 C 1.46503 * 120.00220 * 180.02562 * 14 12 11 16 16 C 1.50705 * 109.46667 * 179.97438 * 15 14 12 17 17 O 1.21284 * 120.00426 * 359.97438 * 16 15 14 18 18 N 1.34779 * 119.99438 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99788 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99978 * 359.97438 * 19 18 16 21 21 C 1.38955 * 119.99883 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99811 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00018 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47073 * 90.00191 * 23 21 19 25 25 H 1.48497 * 109.47423 * 210.00324 * 23 21 19 26 26 H 1.48500 * 109.47000 * 330.00649 * 23 21 19 27 27 N 1.31216 * 108.05642 * 359.61144 * 10 8 7 28 28 H 1.08997 * 109.47058 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46780 * 299.99598 * 1 2 3 30 30 H 1.08998 * 109.47207 * 59.99101 * 1 2 3 31 31 H 1.09005 * 109.46806 * 60.00617 * 3 2 1 32 32 H 1.08994 * 109.47748 * 300.00759 * 3 2 1 33 33 H 1.09005 * 109.46553 * 60.00600 * 4 3 2 34 34 H 1.09002 * 109.46830 * 300.00900 * 4 3 2 35 35 H 1.09005 * 109.47106 * 60.00739 * 5 4 3 36 36 H 1.08994 * 109.47721 * 300.00713 * 5 4 3 37 37 H 1.08001 * 126.06867 * 0.02755 * 7 6 5 38 38 H 1.09002 * 109.47152 * 90.02706 * 9 8 7 39 39 H 1.09001 * 109.46980 * 330.02807 * 9 8 7 40 40 H 1.09004 * 109.47113 * 210.02788 * 9 8 7 41 41 H 0.96997 * 120.00128 * 0.02562 * 11 10 8 42 42 H 0.97009 * 119.99626 * 0.02562 * 14 12 11 43 43 H 1.08999 * 109.46918 * 299.99935 * 15 14 12 44 44 H 1.09003 * 109.47053 * 60.00101 * 15 14 12 45 45 H 0.97006 * 120.00218 * 359.97438 * 18 16 15 46 46 H 0.97000 * 119.99355 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 7 5.6183 2.4666 0.0013 7 6 6.4582 3.0289 -0.8932 8 6 7.7204 2.6863 -0.5490 9 6 8.9786 3.0937 -1.2717 10 6 7.6503 1.8788 0.5973 11 7 8.7398 1.3098 1.2717 12 6 8.5332 0.5511 2.3663 13 8 7.4018 0.3597 2.7687 14 7 9.5805 0.0045 3.0150 15 6 9.3558 -0.8207 4.2045 16 6 10.6796 -1.3073 4.7355 17 8 11.7093 -0.9960 4.1752 18 7 10.7192 -2.0895 5.8324 19 6 11.9233 -2.5327 6.3152 20 1 12.8402 -2.2554 5.8163 21 6 11.9642 -3.3386 7.4464 22 7 10.8485 -3.6763 8.0531 23 14 13.6048 -3.9431 8.1038 24 1 14.1355 -2.9640 9.0863 25 1 13.4180 -5.2584 8.7673 26 1 14.5654 -4.0872 6.9805 27 7 6.3871 1.7525 0.9292 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 1.6887 1.8463 0.8901 32 1 1.6886 1.8465 -0.8898 33 1 3.8575 0.6436 -0.8892 34 1 3.8568 0.6437 0.8908 35 1 3.8359 3.1229 0.8914 36 1 3.8366 3.1235 -0.8885 37 1 6.1729 3.6433 -1.7343 38 1 9.3491 4.0307 -0.8559 39 1 8.7618 3.2271 -2.3316 40 1 9.7347 2.3181 -1.1502 41 1 9.6423 1.4628 0.9511 42 1 10.4832 0.1576 2.6942 43 1 8.8533 -0.2275 4.9685 44 1 8.7338 -1.6761 3.9410 45 1 9.8956 -2.3388 6.2803 46 1 10.8770 -4.2392 8.8426 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661935538.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:52 Heat of formation + Delta-G solvation = -28.573985 kcal Electronic energy + Delta-G solvation = -28159.230913 eV Core-core repulsion = 23893.374818 eV Total energy + Delta-G solvation = -4265.856096 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.48164 -39.71006 -38.37911 -38.16112 -35.64072 -34.39687 -34.01288 -33.60843 -32.09134 -31.35834 -30.54533 -27.93370 -27.42186 -26.47491 -24.93805 -24.29779 -22.58424 -21.72540 -20.52836 -19.89094 -19.45758 -18.26198 -17.95099 -17.43347 -16.80821 -16.60617 -16.02113 -15.67577 -15.54837 -15.26760 -15.03296 -14.74159 -14.56242 -14.41953 -14.04469 -13.93062 -13.74720 -13.40524 -13.29797 -13.22455 -12.58351 -12.45374 -12.27966 -12.16313 -12.04311 -11.93253 -11.60944 -11.48912 -11.38071 -11.11095 -10.71664 -10.55005 -10.43975 -10.29388 -10.07045 -9.85157 -9.61283 -8.90051 -8.65549 -8.60448 -8.09430 -8.06657 -6.48962 -3.90941 1.80182 2.09022 2.59694 2.83345 3.13651 3.23872 3.29297 3.37844 3.59995 3.78098 4.08587 4.20416 4.38255 4.51093 4.66629 4.68162 4.75838 4.91523 4.91829 4.96037 4.99803 5.04977 5.06198 5.13765 5.19741 5.30102 5.41627 5.53415 5.59263 5.70363 5.88821 5.93007 5.96433 6.03028 6.05363 6.10597 6.69649 6.74407 6.76253 6.88791 6.99368 7.48393 7.71138 7.94770 8.22968 8.47582 8.77294 9.06963 9.42001 9.89784 10.67937 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012357 B = 0.001953 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.414863 B =14333.744592 C =16427.334127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.066 3.934 4 C -0.135 4.135 5 C 0.147 3.853 6 N -0.376 5.376 7 C 0.067 3.933 8 C -0.259 4.259 9 C -0.071 4.071 10 C 0.321 3.679 11 N -0.651 5.651 12 C 0.698 3.302 13 O -0.552 6.552 14 N -0.719 5.719 15 C 0.129 3.871 16 C 0.429 3.571 17 O -0.598 6.598 18 N -0.549 5.549 19 C -0.305 4.305 20 H 0.106 0.894 21 C 0.025 3.975 22 N -0.894 5.894 23 Si 0.934 3.066 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.269 1.269 27 N -0.265 5.265 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.040 0.960 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.173 0.827 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.415 0.585 42 H 0.407 0.593 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.396 0.604 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.142 14.737 -19.999 29.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.011 4.011 4 C -0.173 4.173 5 C 0.026 3.974 6 N -0.159 5.159 7 C -0.079 4.079 8 C -0.273 4.273 9 C -0.129 4.129 10 C 0.062 3.938 11 N -0.304 5.304 12 C 0.397 3.603 13 O -0.425 6.425 14 N -0.378 5.378 15 C 0.001 3.999 16 C 0.215 3.785 17 O -0.484 6.484 18 N -0.184 5.184 19 C -0.434 4.434 20 H 0.123 0.877 21 C -0.178 4.178 22 N -0.534 5.534 23 Si 0.760 3.240 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.193 1.193 27 N -0.094 5.094 28 H 0.105 0.895 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.191 0.809 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.252 0.748 42 H 0.245 0.755 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.230 0.770 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.353 13.900 -18.895 29.177 hybrid contribution 1.415 0.225 -0.167 1.442 sum -15.938 14.125 -19.061 28.581 Atomic orbital electron populations 1.22759 0.80790 1.03002 0.99936 1.87917 1.19854 1.27616 1.95396 1.22388 0.93366 0.85117 1.00276 1.21774 0.93093 0.96792 1.05629 1.21437 0.74451 0.97850 1.03701 1.48327 1.06024 1.40042 1.21509 1.22169 0.89366 0.99971 0.96362 1.19692 0.95916 1.10500 1.01213 1.20014 0.93107 1.00846 0.98899 1.18817 0.87595 0.95254 0.92086 1.41930 1.07470 1.52361 1.28650 1.15868 0.85325 0.79212 0.79939 1.91021 1.21011 1.63457 1.67003 1.44703 1.08930 1.53809 1.30317 1.20817 0.97008 0.95154 0.86910 1.19733 0.89686 0.84851 0.84239 1.90486 1.34793 1.62290 1.60875 1.41785 1.10061 1.42765 1.23760 1.19728 0.86464 1.27845 1.09374 0.87665 1.25334 0.99025 0.96945 0.96483 1.69620 1.26698 1.36514 1.20607 0.85806 0.81187 0.77968 0.79011 1.20289 1.20821 1.19332 1.78123 1.00709 1.18392 1.12133 0.89460 0.93919 0.94107 0.92876 0.93220 0.90529 0.88895 0.89627 0.88624 0.80942 0.92061 0.91843 0.92145 0.74836 0.75502 0.89846 0.89832 0.76986 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.92 10.70 -35.23 -0.38 -4.30 16 3 C 0.07 0.49 5.94 37.16 0.22 0.71 16 4 C -0.13 -1.24 5.77 -26.73 -0.15 -1.39 16 5 C 0.15 1.11 6.51 -4.04 -0.03 1.09 16 6 N -0.38 -4.24 3.68 -61.38 -0.23 -4.47 16 7 C 0.07 0.61 11.35 -17.24 -0.20 0.42 16 8 C -0.26 -2.78 6.12 -104.88 -0.64 -3.42 16 9 C -0.07 -0.53 10.22 36.01 0.37 -0.16 16 10 C 0.32 4.66 7.78 -154.36 -1.20 3.46 16 11 N -0.65 -9.19 5.45 -15.51 -0.08 -9.27 16 12 C 0.70 12.34 8.53 -86.92 -0.74 11.60 16 13 O -0.55 -11.78 15.06 5.28 0.08 -11.70 16 14 N -0.72 -12.51 5.53 -66.41 -0.37 -12.88 16 15 C 0.13 2.47 6.15 -5.19 -0.03 2.44 16 16 C 0.43 9.97 7.85 -10.98 -0.09 9.88 16 17 O -0.60 -15.32 15.24 5.55 0.08 -15.24 16 18 N -0.55 -13.78 5.29 -10.96 -0.06 -13.84 16 19 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 20 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 21 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 22 N -0.89 -24.13 13.05 55.50 0.72 -23.41 16 23 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 27 N -0.27 -4.26 10.64 31.44 0.33 -3.93 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.10 0.36 8.07 -51.93 -0.42 -0.06 16 37 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.43 7.69 -51.93 -0.40 0.03 16 41 H 0.41 4.40 8.22 -40.82 -0.34 4.06 16 42 H 0.41 6.69 7.45 -40.82 -0.30 6.39 16 43 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 44 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 45 H 0.40 9.60 7.90 -40.82 -0.32 9.28 16 46 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 398.48 15.07 6.01 6.01 Total: -1.00 -36.71 398.48 -7.31 -44.02 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -6.79 Total: 15.31 kcal Atomic # 6 Polarization: 19.64 SS G_CDS: -1.62 Total: 18.02 kcal Atomic # 7 Polarization: -68.11 SS G_CDS: 0.32 Total: -67.79 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.21 Total: -31.24 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.71 -7.31 -44.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661935538.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.449 kcal (2) G-P(sol) polarization free energy of solvation -36.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds