Wall clock time and date at job start Tue Mar 31 2020 22:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30647 * 128.63934 * 2 1 4 4 O 1.20844 * 109.61366 * 180.02562 * 3 2 1 5 5 N 1.20893 * 115.91150 * 359.69456 * 4 3 2 6 6 C 1.31611 * 109.17937 * 0.49529 * 5 4 3 7 7 C 1.48279 * 128.71118 * 179.82106 * 6 5 4 8 8 O 1.21496 * 119.99669 * 179.67865 * 7 6 5 9 9 N 1.34775 * 120.00175 * 359.68031 * 7 6 5 10 10 C 1.46496 * 119.99954 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47263 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47260 * 65.00119 * 11 10 9 13 13 N 1.46903 * 109.47069 * 305.00189 * 11 10 9 14 14 C 1.46904 * 110.99874 * 304.90380 * 13 11 10 15 15 C 1.50700 * 109.47024 * 185.47583 * 14 13 11 16 16 O 1.21292 * 119.99903 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99744 * 179.72249 * 15 14 13 18 18 C 1.37098 * 119.99690 * 179.97438 * 17 15 14 19 19 H 1.07999 * 119.99811 * 359.97438 * 18 17 15 20 20 C 1.38948 * 119.99862 * 179.97438 * 18 17 15 21 21 N 1.31415 * 120.00119 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99776 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47309 * 90.00412 * 22 20 18 24 24 H 1.48506 * 109.47132 * 209.99744 * 22 20 18 25 25 H 1.48492 * 109.47405 * 329.99585 * 22 20 18 26 26 C 1.52991 * 109.47370 * 185.00121 * 11 10 9 27 27 C 1.53000 * 109.47369 * 175.30904 * 26 11 10 28 28 C 1.53004 * 109.47003 * 295.30857 * 26 11 10 29 29 H 1.09001 * 109.47168 * 269.97677 * 1 2 3 30 30 H 1.09002 * 109.46992 * 29.97727 * 1 2 3 31 31 H 1.09001 * 109.47044 * 149.97439 * 1 2 3 32 32 H 0.96999 * 120.00080 * 359.97438 * 9 7 6 33 33 H 1.08998 * 109.46995 * 60.00012 * 10 9 7 34 34 H 1.09003 * 109.47191 * 300.00138 * 10 9 7 35 35 H 1.00897 * 111.00270 * 68.85023 * 13 11 10 36 36 H 1.09000 * 109.47351 * 65.46953 * 14 13 11 37 37 H 1.09008 * 109.46665 * 305.47264 * 14 13 11 38 38 H 0.97003 * 119.99951 * 359.97438 * 17 15 14 39 39 H 0.96994 * 119.99764 * 180.02562 * 21 20 18 40 40 H 1.09007 * 109.47457 * 55.30595 * 26 11 10 41 41 H 1.09001 * 109.47206 * 54.50196 * 27 26 11 42 42 H 1.08998 * 109.47125 * 174.50436 * 27 26 11 43 43 H 1.09001 * 109.46959 * 294.50118 * 27 26 11 44 44 H 1.08995 * 109.47391 * 60.00203 * 28 26 11 45 45 H 1.09004 * 109.46946 * 179.97438 * 28 26 11 46 46 H 1.09001 * 109.46885 * 299.99712 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0205 0.0000 4 8 3.4652 0.6265 -0.0005 5 7 3.6102 -0.5737 0.0049 6 6 2.4279 -1.1520 -0.0006 7 6 2.1033 -2.5988 -0.0010 8 8 0.9437 -2.9612 -0.0007 9 7 3.0947 -3.5119 -0.0016 10 6 2.7739 -4.9413 -0.0013 11 6 4.0698 -5.7548 -0.0015 12 1 4.6086 -5.5800 0.9298 13 7 4.9067 -5.3424 -1.1362 14 6 4.1697 -5.4546 -2.4020 15 6 5.0968 -5.1538 -3.5514 16 8 6.2572 -4.8731 -3.3371 17 7 4.6378 -5.2017 -4.8177 18 6 5.4811 -4.9276 -5.8633 19 1 6.5131 -4.6728 -5.6722 20 6 5.0080 -4.9774 -7.1688 21 7 5.8165 -4.7152 -8.1711 22 14 3.2229 -5.4174 -7.4992 23 1 2.4024 -4.1797 -7.5126 24 1 3.1158 -6.0964 -8.8155 25 1 2.7313 -6.3257 -6.4322 26 6 3.7378 -7.2430 -0.1270 27 6 5.0343 -8.0467 -0.2448 28 6 2.9656 -7.6995 1.1125 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 4.0205 -3.2226 -0.0021 33 1 2.1925 -5.1833 -0.8909 34 1 2.1936 -5.1833 0.8890 35 1 5.2585 -4.4060 -1.0045 36 1 3.3436 -4.7435 -2.4058 37 1 3.7784 -6.4667 -2.5061 38 1 3.7108 -5.4302 -4.9892 39 1 5.4861 -4.7496 -9.0824 40 1 3.1275 -7.4055 -1.0155 41 1 5.6866 -7.8092 0.5956 42 1 4.8035 -9.1119 -0.2359 43 1 5.5365 -7.7914 -1.1779 44 1 2.0419 -7.1270 1.1965 45 1 2.7286 -8.7597 1.0229 46 1 3.5758 -7.5370 2.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667525311.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:41 Heat of formation + Delta-G solvation = 44.733643 kcal Electronic energy + Delta-G solvation = -30038.410981 eV Core-core repulsion = 25775.733743 eV Total energy + Delta-G solvation = -4262.677238 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -47.19811 -40.39058 -38.94238 -37.76485 -35.58310 -35.11972 -34.56762 -34.09465 -33.11301 -31.67130 -30.00999 -29.04459 -27.44661 -26.71711 -25.63632 -24.14509 -23.05689 -22.62552 -21.12448 -20.08510 -19.35955 -19.27728 -18.78457 -18.27189 -17.47662 -16.76042 -16.45233 -15.80985 -15.46572 -15.06606 -14.83205 -14.76801 -14.40252 -14.27579 -13.91911 -13.85061 -13.79280 -13.58106 -13.20245 -13.10384 -12.58602 -12.51874 -12.33857 -12.27897 -12.20003 -12.06594 -11.77063 -11.75613 -11.48837 -11.22047 -11.11095 -10.94169 -10.72926 -10.67829 -10.62558 -10.54456 -9.99453 -9.59132 -9.58030 -8.68664 -8.25979 -8.19114 -6.32828 -3.84264 0.41320 0.97586 2.24175 2.55603 3.00684 3.01683 3.05045 3.08722 3.13510 3.49993 3.71069 3.97104 4.08642 4.30947 4.37411 4.45124 4.57916 4.74886 4.85112 4.89710 4.99842 5.05425 5.14322 5.18568 5.21241 5.30929 5.47167 5.51246 5.56171 5.58451 5.67493 5.73992 5.79950 5.83146 5.87903 5.91554 6.05525 6.25010 6.51347 6.84073 6.92441 7.35799 7.53033 7.55828 8.10974 8.12439 8.57639 8.93222 9.40495 9.80442 10.80293 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007500 B = 0.003823 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3732.666246 B = 7322.636634 C = 9587.455074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.062 3.938 3 N -0.356 5.356 4 O 0.347 5.653 5 N -0.314 5.314 6 C -0.048 4.048 7 C 0.610 3.390 8 O -0.511 6.511 9 N -0.708 5.708 10 C 0.078 3.922 11 C 0.081 3.919 12 H 0.093 0.907 13 N -0.651 5.651 14 C 0.041 3.959 15 C 0.450 3.550 16 O -0.562 6.562 17 N -0.591 5.591 18 C -0.305 4.305 19 H 0.120 0.880 20 C 0.043 3.957 21 N -0.880 5.880 22 Si 0.878 3.122 23 H -0.272 1.272 24 H -0.276 1.276 25 H -0.269 1.269 26 C -0.085 4.085 27 C -0.136 4.136 28 C -0.151 4.151 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.407 0.593 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.347 0.653 36 H 0.045 0.955 37 H 0.091 0.909 38 H 0.369 0.631 39 H 0.273 0.727 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.046 0.954 43 H 0.073 0.927 44 H 0.054 0.946 45 H 0.058 0.942 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.435 1.953 20.606 24.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.103 4.103 3 N -0.082 5.082 4 O 0.121 5.879 5 N -0.033 5.033 6 C -0.214 4.214 7 C 0.392 3.608 8 O -0.385 6.385 9 N -0.361 5.361 10 C -0.047 4.047 11 C -0.030 4.030 12 H 0.111 0.889 13 N -0.283 5.283 14 C -0.092 4.092 15 C 0.236 3.764 16 O -0.443 6.443 17 N -0.230 5.230 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.160 4.160 21 N -0.520 5.520 22 Si 0.704 3.296 23 H -0.197 1.197 24 H -0.201 1.201 25 H -0.195 1.195 26 C -0.105 4.105 27 C -0.193 4.193 28 C -0.208 4.208 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.120 0.880 32 H 0.244 0.756 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.167 0.833 36 H 0.063 0.937 37 H 0.110 0.890 38 H 0.202 0.798 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.162 1.947 20.440 23.370 hybrid contribution -2.212 0.086 -0.511 2.272 sum -13.374 2.033 19.929 24.087 Atomic orbital electron populations 1.20354 0.82858 1.05427 1.04680 1.26241 1.00390 0.85062 0.98653 1.75089 0.91123 1.23941 1.18052 1.85087 1.23294 1.16499 1.63058 1.75400 1.22887 0.92945 1.12091 1.26022 0.88321 0.98344 1.08713 1.16380 0.85539 0.81526 0.77325 1.90821 1.18758 1.79577 1.49303 1.45818 1.09688 1.06804 1.73787 1.22446 1.00219 0.78366 1.03680 1.22036 0.90558 0.94931 0.95478 0.88895 1.60167 1.36154 1.32135 0.99803 1.21825 0.95243 1.02039 0.90100 1.19665 0.89042 0.84478 0.83263 1.90572 1.17931 1.51819 1.84024 1.42212 1.11573 1.63295 1.05935 1.19425 0.96154 1.44213 0.83570 0.86256 1.25025 0.98102 0.97638 0.95283 1.69618 1.35151 1.48065 0.99213 0.86703 0.84931 0.79114 0.78845 1.19702 1.20082 1.19487 1.21096 0.98036 0.92639 0.98694 1.21669 0.96192 0.97957 1.03483 1.21924 0.99870 1.01413 0.97627 0.88823 0.89293 0.87960 0.75637 0.90258 0.90074 0.83341 0.93689 0.89043 0.79802 0.91599 0.90902 0.92909 0.93481 0.90813 0.92662 0.92296 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.22 36.01 0.37 -0.18 16 2 C 0.06 0.65 7.79 -79.33 -0.62 0.03 16 3 N -0.36 -3.96 12.22 33.75 0.41 -3.54 16 4 O 0.35 3.94 11.65 27.27 0.32 4.26 16 5 N -0.31 -3.68 12.13 33.49 0.41 -3.28 16 6 C -0.05 -0.56 7.56 -80.07 -0.61 -1.16 16 7 C 0.61 7.21 7.85 -12.13 -0.10 7.12 16 8 O -0.51 -6.84 15.96 5.37 0.09 -6.76 16 9 N -0.71 -7.33 5.33 -61.11 -0.33 -7.66 16 10 C 0.08 0.74 4.11 -4.04 -0.02 0.73 16 11 C 0.08 0.79 2.29 -67.71 -0.16 0.63 16 12 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 13 N -0.65 -8.71 5.01 -107.99 -0.54 -9.25 16 14 C 0.04 0.63 5.27 -4.97 -0.03 0.60 16 15 C 0.45 9.92 7.83 -10.98 -0.09 9.84 16 16 O -0.56 -14.67 15.90 5.55 0.09 -14.58 16 17 N -0.59 -13.95 5.09 -10.96 -0.06 -14.00 16 18 C -0.30 -8.60 10.16 -14.93 -0.15 -8.75 16 19 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 20 C 0.04 1.17 5.50 -17.47 -0.10 1.07 16 21 N -0.88 -25.74 13.96 55.50 0.77 -24.96 16 22 Si 0.88 19.45 27.74 -169.99 -4.71 14.73 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 26 C -0.09 -0.80 2.13 -90.62 -0.19 -0.99 16 27 C -0.14 -1.45 8.89 37.16 0.33 -1.12 16 28 C -0.15 -1.12 8.94 37.16 0.33 -0.78 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.10 0.81 7.31 -51.93 -0.38 0.43 16 32 H 0.41 4.03 7.08 -40.82 -0.29 3.74 16 33 H 0.08 0.85 6.76 -51.93 -0.35 0.49 16 34 H 0.08 0.71 6.81 -51.93 -0.35 0.36 16 35 H 0.35 4.77 7.34 -39.29 -0.29 4.48 16 36 H 0.05 0.65 6.64 -51.93 -0.34 0.30 16 37 H 0.09 1.29 6.29 -51.92 -0.33 0.96 16 38 H 0.37 7.74 5.76 -40.82 -0.24 7.50 16 39 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.07 0.72 6.64 -51.92 -0.34 0.38 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 1.00 7.68 -51.93 -0.40 0.61 16 44 H 0.05 0.38 6.67 -51.93 -0.35 0.04 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 381.92 15.07 5.76 5.76 Total: -1.00 -33.08 381.92 -4.98 -38.06 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -6.17 Total: 14.19 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -1.01 Total: 7.02 kcal Atomic # 7 Polarization: -63.36 SS G_CDS: 0.67 Total: -62.69 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: 0.49 Total: -17.08 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.71 Total: 14.73 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.08 -4.98 -38.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667525311.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.796 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds