Wall clock time and date at job start Tue Mar 31 2020 22:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30647 * 128.63934 * 2 1 4 4 O 1.20844 * 109.61366 * 180.02562 * 3 2 1 5 5 N 1.20893 * 115.91150 * 359.69456 * 4 3 2 6 6 C 1.31611 * 109.17937 * 0.49529 * 5 4 3 7 7 C 1.48279 * 128.71118 * 179.82106 * 6 5 4 8 8 O 1.21496 * 119.99669 * 179.67865 * 7 6 5 9 9 N 1.34775 * 120.00175 * 359.68031 * 7 6 5 10 10 C 1.46496 * 119.99954 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47263 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47260 * 65.00119 * 11 10 9 13 13 N 1.46903 * 109.47069 * 305.00189 * 11 10 9 14 14 C 1.46904 * 110.99874 * 304.90380 * 13 11 10 15 15 C 1.50700 * 109.47024 * 185.47583 * 14 13 11 16 16 O 1.21292 * 119.99903 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99744 * 179.72249 * 15 14 13 18 18 C 1.37098 * 119.99690 * 179.97438 * 17 15 14 19 19 H 1.07999 * 119.99811 * 359.97438 * 18 17 15 20 20 C 1.38948 * 119.99862 * 179.97438 * 18 17 15 21 21 N 1.31415 * 120.00119 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99776 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47309 * 90.00412 * 22 20 18 24 24 H 1.48506 * 109.47132 * 209.99744 * 22 20 18 25 25 H 1.48492 * 109.47405 * 329.99585 * 22 20 18 26 26 C 1.52991 * 109.47370 * 185.00121 * 11 10 9 27 27 C 1.53000 * 109.47369 * 175.30904 * 26 11 10 28 28 C 1.53004 * 109.47003 * 295.30857 * 26 11 10 29 29 H 1.09001 * 109.47168 * 269.97677 * 1 2 3 30 30 H 1.09002 * 109.46992 * 29.97727 * 1 2 3 31 31 H 1.09001 * 109.47044 * 149.97439 * 1 2 3 32 32 H 0.96999 * 120.00080 * 359.97438 * 9 7 6 33 33 H 1.08998 * 109.46995 * 60.00012 * 10 9 7 34 34 H 1.09003 * 109.47191 * 300.00138 * 10 9 7 35 35 H 1.00897 * 111.00270 * 68.85023 * 13 11 10 36 36 H 1.09000 * 109.47351 * 65.46953 * 14 13 11 37 37 H 1.09008 * 109.46665 * 305.47264 * 14 13 11 38 38 H 0.97003 * 119.99951 * 359.97438 * 17 15 14 39 39 H 0.96994 * 119.99764 * 180.02562 * 21 20 18 40 40 H 1.09007 * 109.47457 * 55.30595 * 26 11 10 41 41 H 1.09001 * 109.47206 * 54.50196 * 27 26 11 42 42 H 1.08998 * 109.47125 * 174.50436 * 27 26 11 43 43 H 1.09001 * 109.46959 * 294.50118 * 27 26 11 44 44 H 1.08995 * 109.47391 * 60.00203 * 28 26 11 45 45 H 1.09004 * 109.46946 * 179.97438 * 28 26 11 46 46 H 1.09001 * 109.46885 * 299.99712 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0205 0.0000 4 8 3.4652 0.6265 -0.0005 5 7 3.6102 -0.5737 0.0049 6 6 2.4279 -1.1520 -0.0006 7 6 2.1033 -2.5988 -0.0010 8 8 0.9437 -2.9612 -0.0007 9 7 3.0947 -3.5119 -0.0016 10 6 2.7739 -4.9413 -0.0013 11 6 4.0698 -5.7548 -0.0015 12 1 4.6086 -5.5800 0.9298 13 7 4.9067 -5.3424 -1.1362 14 6 4.1697 -5.4546 -2.4020 15 6 5.0968 -5.1538 -3.5514 16 8 6.2572 -4.8731 -3.3371 17 7 4.6378 -5.2017 -4.8177 18 6 5.4811 -4.9276 -5.8633 19 1 6.5131 -4.6728 -5.6722 20 6 5.0080 -4.9774 -7.1688 21 7 5.8165 -4.7152 -8.1711 22 14 3.2229 -5.4174 -7.4992 23 1 2.4024 -4.1797 -7.5126 24 1 3.1158 -6.0964 -8.8155 25 1 2.7313 -6.3257 -6.4322 26 6 3.7378 -7.2430 -0.1270 27 6 5.0343 -8.0467 -0.2448 28 6 2.9656 -7.6995 1.1125 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 4.0205 -3.2226 -0.0021 33 1 2.1925 -5.1833 -0.8909 34 1 2.1936 -5.1833 0.8890 35 1 5.2585 -4.4060 -1.0045 36 1 3.3436 -4.7435 -2.4058 37 1 3.7784 -6.4667 -2.5061 38 1 3.7108 -5.4302 -4.9892 39 1 5.4861 -4.7496 -9.0824 40 1 3.1275 -7.4055 -1.0155 41 1 5.6866 -7.8092 0.5956 42 1 4.8035 -9.1119 -0.2359 43 1 5.5365 -7.7914 -1.1779 44 1 2.0419 -7.1270 1.1965 45 1 2.7286 -8.7597 1.0229 46 1 3.5758 -7.5370 2.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667525311.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:40 Heat of formation + Delta-G solvation = 17.941396 kcal Electronic energy + Delta-G solvation = -30039.572780 eV Core-core repulsion = 25775.733743 eV Total energy + Delta-G solvation = -4263.839037 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.04010 -41.31787 -40.36022 -39.07298 -36.38206 -36.04526 -35.98200 -35.38719 -34.23529 -33.72970 -30.74400 -29.97281 -28.61837 -27.58160 -26.70711 -25.74556 -23.88848 -23.45841 -22.02796 -21.47699 -20.79665 -20.21359 -20.06734 -19.49520 -18.32393 -18.19335 -17.33889 -17.10481 -16.78550 -16.46953 -15.88635 -15.76994 -15.70852 -15.20985 -15.07906 -14.79915 -14.69824 -14.47160 -14.43301 -14.30231 -14.05135 -13.96337 -13.32456 -13.15317 -13.08095 -12.98557 -12.88817 -12.81449 -12.62736 -12.43931 -12.35589 -12.01017 -11.93882 -11.73657 -11.58050 -11.53030 -11.46345 -11.34409 -10.47288 -10.39701 -10.26305 -9.40975 -8.43141 -6.03626 -0.46788 0.16979 1.26934 1.31818 1.39772 1.40824 1.66914 1.93821 2.19621 2.20030 2.27706 2.62957 2.74624 3.13141 3.33421 3.50388 3.57053 3.64379 3.91653 4.02958 4.07056 4.13352 4.29655 4.30636 4.40465 4.51594 4.56248 4.59847 4.67029 4.78054 4.86988 4.94467 4.98151 5.06416 5.15415 5.17348 5.35908 5.49636 5.53106 5.62126 5.86253 5.97882 5.99381 6.29515 6.57471 6.65773 6.86588 7.25603 7.37917 7.94454 8.74535 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007500 B = 0.003823 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3732.666246 B = 7322.636634 C = 9587.455074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.067 3.933 3 N -0.366 5.366 4 O 0.341 5.659 5 N -0.322 5.322 6 C -0.060 4.060 7 C 0.610 3.390 8 O -0.527 6.527 9 N -0.703 5.703 10 C 0.081 3.919 11 C 0.089 3.911 12 H 0.108 0.892 13 N -0.665 5.665 14 C 0.060 3.940 15 C 0.450 3.550 16 O -0.608 6.608 17 N -0.593 5.593 18 C -0.327 4.327 19 H 0.057 0.943 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.959 3.041 23 H -0.260 1.260 24 H -0.273 1.273 25 H -0.232 1.232 26 C -0.083 4.083 27 C -0.133 4.133 28 C -0.145 4.145 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.409 0.591 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.343 0.657 36 H 0.065 0.935 37 H 0.115 0.885 38 H 0.387 0.613 39 H 0.279 0.721 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.039 0.961 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.090 0.913 22.370 27.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.099 4.099 3 N -0.093 5.093 4 O 0.116 5.884 5 N -0.042 5.042 6 C -0.226 4.226 7 C 0.393 3.607 8 O -0.402 6.402 9 N -0.356 5.356 10 C -0.043 4.043 11 C -0.021 4.021 12 H 0.126 0.874 13 N -0.296 5.296 14 C -0.072 4.072 15 C 0.237 3.763 16 O -0.492 6.492 17 N -0.235 5.235 18 C -0.456 4.456 19 H 0.075 0.925 20 C -0.211 4.211 21 N -0.574 5.574 22 Si 0.779 3.221 23 H -0.185 1.185 24 H -0.198 1.198 25 H -0.155 1.155 26 C -0.103 4.103 27 C -0.190 4.190 28 C -0.202 4.202 29 H 0.131 0.869 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.246 0.754 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.162 0.838 36 H 0.083 0.917 37 H 0.132 0.868 38 H 0.222 0.778 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.804 0.889 22.243 26.734 hybrid contribution -0.924 0.431 -0.977 1.412 sum -15.728 1.320 21.266 26.483 Atomic orbital electron populations 1.20526 0.80715 1.05967 1.06031 1.26759 1.01564 0.84329 0.97253 1.75089 0.91115 1.24276 1.18870 1.85077 1.23628 1.16344 1.63361 1.75374 1.23323 0.93198 1.12256 1.26166 0.88595 0.98690 1.09120 1.16401 0.85486 0.81649 0.77186 1.90809 1.19267 1.79801 1.50316 1.45847 1.09579 1.07076 1.73065 1.22471 0.99895 0.77632 1.04288 1.22096 0.90368 0.95229 0.94394 0.87367 1.60138 1.37233 1.32120 1.00102 1.21649 0.93747 1.03671 0.88178 1.20951 0.89348 0.81735 0.84223 1.90551 1.20620 1.53102 1.84916 1.42058 1.11823 1.64096 1.05522 1.19001 0.94642 1.46173 0.85821 0.92531 1.26053 1.04312 0.96640 0.94123 1.69798 1.38333 1.49267 1.00009 0.85443 0.77068 0.79854 0.79691 1.18458 1.19793 1.15496 1.21100 0.97445 0.91858 0.99877 1.21619 0.96762 0.98903 1.01729 1.21872 0.99949 1.01837 0.96592 0.86940 0.87742 0.88300 0.75422 0.90662 0.88425 0.83755 0.91705 0.86755 0.77768 0.91156 0.91042 0.92639 0.92481 0.94185 0.91744 0.91786 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.22 71.24 0.73 -0.21 16 2 C 0.07 1.30 7.79 45.17 0.35 1.65 16 3 N -0.37 -7.82 12.22 -51.81 -0.63 -8.45 16 4 O 0.34 7.64 11.65 140.86 1.64 9.28 16 5 N -0.32 -7.41 12.13 -52.05 -0.63 -8.04 16 6 C -0.06 -1.32 7.56 44.29 0.34 -0.99 16 7 C 0.61 13.30 7.85 86.92 0.68 13.98 16 8 O -0.53 -12.90 15.96 -3.70 -0.06 -12.96 16 9 N -0.70 -13.09 5.33 -465.56 -2.48 -15.57 16 10 C 0.08 1.30 4.11 86.38 0.35 1.66 16 11 C 0.09 1.49 2.29 44.91 0.10 1.59 16 12 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 13 N -0.66 -16.86 5.01 -495.56 -2.48 -19.35 16 14 C 0.06 1.74 5.27 85.56 0.45 2.19 16 15 C 0.45 19.93 7.83 87.66 0.69 20.62 16 16 O -0.61 -33.00 15.90 -3.07 -0.05 -33.05 16 17 N -0.59 -27.99 5.09 -306.98 -1.56 -29.55 16 18 C -0.33 -19.21 10.16 84.04 0.85 -18.36 16 19 H 0.06 3.95 7.39 -2.91 -0.02 3.93 16 20 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 21 N -0.93 -56.52 13.96 21.66 0.30 -56.22 16 22 Si 0.96 39.15 27.74 68.60 1.90 41.05 16 23 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.23 -7.98 6.52 99.48 0.65 -7.33 16 26 C -0.08 -1.31 2.13 -10.80 -0.02 -1.34 16 27 C -0.13 -2.60 8.89 71.98 0.64 -1.96 16 28 C -0.14 -1.61 8.94 71.98 0.64 -0.97 16 29 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 1.35 7.31 -2.39 -0.02 1.33 16 32 H 0.41 7.49 7.08 -92.71 -0.66 6.84 16 33 H 0.08 1.33 6.76 -2.39 -0.02 1.31 16 34 H 0.10 1.33 6.81 -2.39 -0.02 1.31 16 35 H 0.34 9.18 7.34 -89.70 -0.66 8.52 16 36 H 0.07 1.68 6.64 -2.39 -0.02 1.66 16 37 H 0.11 2.87 6.29 -2.38 -0.01 2.86 16 38 H 0.39 15.33 5.76 -92.71 -0.53 14.79 16 39 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 40 H 0.07 1.17 6.64 -2.38 -0.02 1.15 16 41 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 42 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 43 H 0.04 1.06 7.68 -2.39 -0.02 1.04 16 44 H 0.06 0.63 6.67 -2.39 -0.02 0.61 16 45 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -76.90 381.92 1.37 -75.52 By element: Atomic # 1 Polarization: 40.54 SS G_CDS: -0.84 Total: 39.69 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: 6.27 Total: 17.65 kcal Atomic # 7 Polarization: -129.70 SS G_CDS: -7.49 Total: -137.19 kcal Atomic # 8 Polarization: -38.26 SS G_CDS: 1.53 Total: -36.73 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 1.90 Total: 41.05 kcal Total: -76.90 1.37 -75.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667525311.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.464 kcal (2) G-P(sol) polarization free energy of solvation -76.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds