Wall clock time and date at job start Tue Mar 31 2020 22:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30642 * 128.64236 * 2 1 4 4 O 1.20839 * 109.61891 * 180.25752 * 3 2 1 5 5 N 1.20905 * 115.90819 * 0.02562 * 4 3 2 6 6 C 1.31596 * 109.18088 * 0.02562 * 5 4 3 7 7 C 1.48280 * 128.71296 * 180.02562 * 6 5 4 8 8 O 1.21499 * 119.99791 * 180.02562 * 7 6 5 9 9 N 1.34768 * 119.99826 * 359.97438 * 7 6 5 10 10 C 1.46504 * 119.99797 * 180.02562 * 9 7 6 11 11 C 1.53011 * 109.46867 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.46608 * 294.99803 * 11 10 9 13 13 N 1.46897 * 109.46953 * 54.99951 * 11 10 9 14 14 C 1.46905 * 110.99489 * 204.99604 * 13 11 10 15 15 C 1.50706 * 109.46600 * 180.02562 * 14 13 11 16 16 O 1.21284 * 120.00076 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99833 * 180.02562 * 15 14 13 18 18 C 1.37096 * 120.00184 * 180.02562 * 17 15 14 19 19 H 1.07995 * 119.99665 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99719 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00627 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99700 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46907 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46879 * 119.99711 * 22 20 18 25 25 H 1.48493 * 109.47407 * 240.00007 * 22 20 18 26 26 C 1.53002 * 109.46794 * 175.00147 * 11 10 9 27 27 C 1.53000 * 109.47249 * 304.99833 * 26 11 10 28 28 C 1.52996 * 109.47219 * 64.99736 * 26 11 10 29 29 H 1.09002 * 109.47143 * 269.67435 * 1 2 3 30 30 H 1.08999 * 109.47218 * 29.67678 * 1 2 3 31 31 H 1.08999 * 109.47414 * 149.67725 * 1 2 3 32 32 H 0.97006 * 120.00499 * 0.02562 * 9 7 6 33 33 H 1.08996 * 109.47381 * 299.99829 * 10 9 7 34 34 H 1.08994 * 109.47230 * 60.00356 * 10 9 7 35 35 H 1.00895 * 111.00744 * 328.95314 * 13 11 10 36 36 H 1.08997 * 109.47390 * 300.00305 * 14 13 11 37 37 H 1.08999 * 109.46677 * 60.00435 * 14 13 11 38 38 H 0.97011 * 119.99866 * 359.97438 * 17 15 14 39 39 H 0.96998 * 120.00059 * 180.02562 * 21 20 18 40 40 H 1.09000 * 109.47029 * 185.00135 * 26 11 10 41 41 H 1.08999 * 109.47328 * 59.99952 * 27 26 11 42 42 H 1.08995 * 109.47549 * 180.02562 * 27 26 11 43 43 H 1.09005 * 109.47026 * 300.00748 * 27 26 11 44 44 H 1.09000 * 109.47446 * 300.00144 * 28 26 11 45 45 H 1.09004 * 109.47136 * 60.00124 * 28 26 11 46 46 H 1.09001 * 109.47104 * 179.97438 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0204 0.0000 4 8 3.4652 0.6265 -0.0051 5 7 3.6101 -0.5738 -0.0095 6 6 2.4280 -1.1520 -0.0079 7 6 2.1033 -2.5989 -0.0112 8 8 0.9436 -2.9612 -0.0096 9 7 3.0946 -3.5119 -0.0171 10 6 2.7738 -4.9413 -0.0209 11 6 4.0697 -5.7548 -0.0266 12 1 4.6060 -5.5771 -0.9588 13 7 4.9095 -5.3459 1.1072 14 6 6.3275 -5.6195 0.8375 15 6 7.1559 -5.1884 2.0204 16 8 6.6180 -4.7017 2.9924 17 7 8.4945 -5.3438 1.9980 18 6 9.2481 -4.9521 3.0742 19 1 8.7692 -4.5188 3.9397 20 6 10.6281 -5.1128 3.0513 21 7 11.2109 -5.6406 1.9983 22 14 11.6550 -4.5785 4.5174 23 1 10.7658 -4.0194 5.5671 24 1 12.3872 -5.7501 5.0621 25 1 12.6282 -3.5421 4.0888 26 6 3.7379 -7.2434 0.0951 27 6 2.8783 -7.4743 1.3395 28 6 2.9692 -7.6979 -1.1472 29 1 -0.3633 -0.0058 1.0277 30 1 -0.3633 0.8929 -0.5088 31 1 -0.3634 -0.8871 -0.5188 32 1 4.0205 -3.2226 -0.0188 33 1 2.1955 -5.1863 0.8699 34 1 2.1904 -5.1804 -0.9100 35 1 4.7653 -4.3729 1.3317 36 1 6.4656 -6.6872 0.6674 37 1 6.6421 -5.0668 -0.0477 38 1 8.9246 -5.7334 1.2207 39 1 12.1742 -5.7531 1.9826 40 1 4.6617 -7.8158 0.1804 41 1 1.9545 -6.9019 1.2543 42 1 2.6422 -8.5348 1.4265 43 1 3.4259 -7.1504 2.2246 44 1 2.0455 -7.1255 -1.2325 45 1 3.5817 -7.5334 -2.0338 46 1 2.7332 -8.7585 -1.0607 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667525312.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:44 Heat of formation + Delta-G solvation = 37.852331 kcal Electronic energy + Delta-G solvation = -29516.331085 eV Core-core repulsion = 25253.355451 eV Total energy + Delta-G solvation = -4262.975634 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -47.17511 -40.27304 -38.71964 -37.69334 -35.55770 -35.08255 -34.43676 -34.11991 -33.24247 -31.24235 -29.98488 -28.91551 -27.20169 -26.66746 -25.52896 -24.02611 -23.31254 -22.85528 -21.17011 -19.68133 -19.33794 -19.25394 -18.53151 -17.92865 -17.42721 -16.82308 -16.16488 -15.81610 -15.37355 -15.07543 -14.77454 -14.49943 -14.39518 -14.06206 -13.92277 -13.89615 -13.84926 -13.58261 -13.41428 -13.20202 -12.46743 -12.32770 -12.21849 -12.17184 -12.02663 -11.93014 -11.62593 -11.52246 -11.45684 -11.12909 -11.04009 -10.90161 -10.70992 -10.65600 -10.46182 -10.35919 -10.24720 -9.54686 -9.48546 -8.51555 -8.18234 -7.99212 -6.44416 -3.85203 0.44584 0.99223 2.29099 2.59537 3.04070 3.10994 3.14832 3.25815 3.32970 3.53299 3.86165 3.97003 4.22859 4.33490 4.41063 4.52700 4.76338 4.77211 4.92163 5.06845 5.10411 5.14716 5.19907 5.21270 5.24456 5.38282 5.50787 5.56604 5.60033 5.70307 5.72514 5.83247 5.86444 5.93288 5.99235 6.11463 6.20597 6.32233 6.51179 6.89106 7.06494 7.46933 7.53161 7.57159 8.03402 8.13420 8.57801 9.15294 9.50941 10.01926 10.73289 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009075 B = 0.002952 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.633730 B = 9482.269019 C =11998.149023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.062 3.938 3 N -0.357 5.357 4 O 0.347 5.653 5 N -0.313 5.313 6 C -0.048 4.048 7 C 0.611 3.389 8 O -0.512 6.512 9 N -0.709 5.709 10 C 0.113 3.887 11 C 0.079 3.921 12 H 0.051 0.949 13 N -0.661 5.661 14 C 0.049 3.951 15 C 0.440 3.560 16 O -0.582 6.582 17 N -0.562 5.562 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.023 3.977 21 N -0.901 5.901 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.281 1.281 26 C -0.081 4.081 27 C -0.145 4.145 28 C -0.152 4.152 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.407 0.593 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.347 0.653 36 H 0.089 0.911 37 H 0.044 0.956 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.078 0.922 41 H 0.051 0.949 42 H 0.048 0.952 43 H 0.074 0.926 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.119 3.471 -10.208 21.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.104 4.104 3 N -0.083 5.083 4 O 0.120 5.880 5 N -0.032 5.032 6 C -0.214 4.214 7 C 0.393 3.607 8 O -0.386 6.386 9 N -0.362 5.362 10 C -0.010 4.010 11 C -0.032 4.032 12 H 0.069 0.931 13 N -0.296 5.296 14 C -0.084 4.084 15 C 0.225 3.775 16 O -0.466 6.466 17 N -0.199 5.199 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.207 1.207 26 C -0.100 4.100 27 C -0.202 4.202 28 C -0.210 4.210 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.243 0.757 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.168 0.832 36 H 0.107 0.893 37 H 0.062 0.938 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.093 0.907 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.253 3.580 -9.229 21.648 hybrid contribution 1.117 0.266 -0.454 1.234 sum -18.136 3.846 -9.682 20.915 Atomic orbital electron populations 1.20347 0.82862 1.05185 1.04868 1.26240 1.00367 0.85079 0.98716 1.75079 0.91161 1.23993 1.18098 1.85098 1.23259 1.16520 1.63091 1.75430 1.22899 0.92911 1.11998 1.26047 0.88261 0.98393 1.08685 1.16347 0.85510 0.81469 0.77351 1.90816 1.18713 1.79574 1.49498 1.45919 1.09675 1.07061 1.73567 1.21945 0.97963 0.77083 1.04008 1.21861 0.92434 0.95726 0.93155 0.93077 1.60075 1.05032 1.27190 1.37258 1.21767 0.87991 1.01959 0.96644 1.19758 0.83026 0.85500 0.89220 1.90533 1.71529 1.49149 1.35419 1.41866 1.04763 1.54931 1.18339 1.19746 0.88523 1.37798 0.96747 0.87868 1.25262 0.97097 0.97214 0.98336 1.69615 1.11254 1.44445 1.28943 0.85808 0.79465 0.78222 0.80916 1.19196 1.20729 1.20732 1.21034 0.99757 0.93731 0.95506 1.21836 0.99289 1.00570 0.98544 1.21941 1.00204 1.01443 0.97396 0.88716 0.89405 0.88008 0.75663 0.89030 0.89959 0.83189 0.89325 0.93799 0.77481 0.91899 0.90351 0.93013 0.93336 0.90700 0.92549 0.92799 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.22 36.00 0.37 -0.15 16 2 C 0.06 0.63 7.79 -79.33 -0.62 0.01 16 3 N -0.36 -3.94 12.22 33.76 0.41 -3.53 16 4 O 0.35 4.00 11.65 27.26 0.32 4.32 16 5 N -0.31 -3.79 12.13 33.49 0.41 -3.39 16 6 C -0.05 -0.56 7.56 -80.07 -0.61 -1.16 16 7 C 0.61 7.29 7.85 -12.13 -0.10 7.20 16 8 O -0.51 -6.78 15.96 5.37 0.09 -6.69 16 9 N -0.71 -7.83 4.99 -61.11 -0.30 -8.13 16 10 C 0.11 1.16 4.61 -4.03 -0.02 1.15 16 11 C 0.08 0.86 1.97 -67.71 -0.13 0.73 16 12 H 0.05 0.53 7.80 -51.93 -0.40 0.12 16 13 N -0.66 -9.69 5.38 -107.98 -0.58 -10.27 16 14 C 0.05 0.81 5.97 -4.97 -0.03 0.78 16 15 C 0.44 10.04 7.82 -10.98 -0.09 9.96 16 16 O -0.58 -15.45 15.78 5.55 0.09 -15.36 16 17 N -0.56 -13.96 5.29 -10.96 -0.06 -14.02 16 18 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.29 13.05 55.50 0.72 -23.57 16 22 Si 0.93 20.96 29.55 -169.99 -5.02 15.93 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 C -0.08 -0.83 2.82 -90.62 -0.26 -1.08 16 27 C -0.15 -1.57 8.60 37.16 0.32 -1.25 16 28 C -0.15 -1.24 8.95 37.16 0.33 -0.91 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.72 7.32 -51.93 -0.38 0.34 16 32 H 0.41 4.50 7.23 -40.82 -0.30 4.21 16 33 H 0.09 1.03 6.06 -51.93 -0.31 0.72 16 34 H 0.08 0.76 6.81 -51.93 -0.35 0.41 16 35 H 0.35 5.40 6.41 -39.29 -0.25 5.15 16 36 H 0.09 1.35 7.36 -51.93 -0.38 0.97 16 37 H 0.04 0.65 8.05 -51.93 -0.42 0.23 16 38 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 39 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.08 0.89 7.35 -51.93 -0.38 0.50 16 41 H 0.05 0.52 6.23 -51.93 -0.32 0.19 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.07 1.01 7.75 -51.93 -0.40 0.60 16 44 H 0.06 0.43 6.68 -51.93 -0.35 0.08 16 45 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 385.80 15.07 5.81 5.81 Total: -1.00 -31.53 385.80 -5.38 -36.91 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -6.20 Total: 14.59 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -1.06 Total: 7.37 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: 0.60 Total: -62.89 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: 0.49 Total: -17.73 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.53 -5.38 -36.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667525312.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.763 kcal (2) G-P(sol) polarization free energy of solvation -31.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds