Wall clock time and date at job start Tue Mar 31 2020 22:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30642 * 128.64236 * 2 1 4 4 O 1.20839 * 109.61891 * 180.25752 * 3 2 1 5 5 N 1.20905 * 115.90819 * 0.02562 * 4 3 2 6 6 C 1.31596 * 109.18088 * 0.02562 * 5 4 3 7 7 C 1.48280 * 128.71296 * 180.02562 * 6 5 4 8 8 O 1.21499 * 119.99791 * 180.02562 * 7 6 5 9 9 N 1.34768 * 119.99826 * 359.97438 * 7 6 5 10 10 C 1.46504 * 119.99797 * 180.02562 * 9 7 6 11 11 C 1.53011 * 109.46867 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.46608 * 294.99803 * 11 10 9 13 13 N 1.46897 * 109.46953 * 54.99951 * 11 10 9 14 14 C 1.46905 * 110.99489 * 204.99604 * 13 11 10 15 15 C 1.50706 * 109.46600 * 180.02562 * 14 13 11 16 16 O 1.21284 * 120.00076 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99833 * 180.02562 * 15 14 13 18 18 C 1.37096 * 120.00184 * 180.02562 * 17 15 14 19 19 H 1.07995 * 119.99665 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99719 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00627 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99700 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46907 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46879 * 119.99711 * 22 20 18 25 25 H 1.48493 * 109.47407 * 240.00007 * 22 20 18 26 26 C 1.53002 * 109.46794 * 175.00147 * 11 10 9 27 27 C 1.53000 * 109.47249 * 304.99833 * 26 11 10 28 28 C 1.52996 * 109.47219 * 64.99736 * 26 11 10 29 29 H 1.09002 * 109.47143 * 269.67435 * 1 2 3 30 30 H 1.08999 * 109.47218 * 29.67678 * 1 2 3 31 31 H 1.08999 * 109.47414 * 149.67725 * 1 2 3 32 32 H 0.97006 * 120.00499 * 0.02562 * 9 7 6 33 33 H 1.08996 * 109.47381 * 299.99829 * 10 9 7 34 34 H 1.08994 * 109.47230 * 60.00356 * 10 9 7 35 35 H 1.00895 * 111.00744 * 328.95314 * 13 11 10 36 36 H 1.08997 * 109.47390 * 300.00305 * 14 13 11 37 37 H 1.08999 * 109.46677 * 60.00435 * 14 13 11 38 38 H 0.97011 * 119.99866 * 359.97438 * 17 15 14 39 39 H 0.96998 * 120.00059 * 180.02562 * 21 20 18 40 40 H 1.09000 * 109.47029 * 185.00135 * 26 11 10 41 41 H 1.08999 * 109.47328 * 59.99952 * 27 26 11 42 42 H 1.08995 * 109.47549 * 180.02562 * 27 26 11 43 43 H 1.09005 * 109.47026 * 300.00748 * 27 26 11 44 44 H 1.09000 * 109.47446 * 300.00144 * 28 26 11 45 45 H 1.09004 * 109.47136 * 60.00124 * 28 26 11 46 46 H 1.09001 * 109.47104 * 179.97438 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0204 0.0000 4 8 3.4652 0.6265 -0.0051 5 7 3.6101 -0.5738 -0.0095 6 6 2.4280 -1.1520 -0.0079 7 6 2.1033 -2.5989 -0.0112 8 8 0.9436 -2.9612 -0.0096 9 7 3.0946 -3.5119 -0.0171 10 6 2.7738 -4.9413 -0.0209 11 6 4.0697 -5.7548 -0.0266 12 1 4.6060 -5.5771 -0.9588 13 7 4.9095 -5.3459 1.1072 14 6 6.3275 -5.6195 0.8375 15 6 7.1559 -5.1884 2.0204 16 8 6.6180 -4.7017 2.9924 17 7 8.4945 -5.3438 1.9980 18 6 9.2481 -4.9521 3.0742 19 1 8.7692 -4.5188 3.9397 20 6 10.6281 -5.1128 3.0513 21 7 11.2109 -5.6406 1.9983 22 14 11.6550 -4.5785 4.5174 23 1 10.7658 -4.0194 5.5671 24 1 12.3872 -5.7501 5.0621 25 1 12.6282 -3.5421 4.0888 26 6 3.7379 -7.2434 0.0951 27 6 2.8783 -7.4743 1.3395 28 6 2.9692 -7.6979 -1.1472 29 1 -0.3633 -0.0058 1.0277 30 1 -0.3633 0.8929 -0.5088 31 1 -0.3634 -0.8871 -0.5188 32 1 4.0205 -3.2226 -0.0188 33 1 2.1955 -5.1863 0.8699 34 1 2.1904 -5.1804 -0.9100 35 1 4.7653 -4.3729 1.3317 36 1 6.4656 -6.6872 0.6674 37 1 6.6421 -5.0668 -0.0477 38 1 8.9246 -5.7334 1.2207 39 1 12.1742 -5.7531 1.9826 40 1 4.6617 -7.8158 0.1804 41 1 1.9545 -6.9019 1.2543 42 1 2.6422 -8.5348 1.4265 43 1 3.4259 -7.1504 2.2246 44 1 2.0455 -7.1255 -1.2325 45 1 3.5817 -7.5334 -2.0338 46 1 2.7332 -8.7585 -1.0607 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667525312.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:44 Heat of formation + Delta-G solvation = 13.833202 kcal Electronic energy + Delta-G solvation = -29517.372633 eV Core-core repulsion = 25253.355451 eV Total energy + Delta-G solvation = -4264.017182 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.03439 -41.22124 -40.22034 -39.00192 -36.37072 -36.02462 -35.97128 -35.31142 -34.50303 -33.24418 -30.71585 -29.88573 -28.12451 -27.87772 -26.74134 -25.53985 -24.25873 -23.67795 -22.05950 -21.17262 -20.44114 -20.20849 -19.90768 -19.43845 -18.37005 -17.94418 -17.39206 -16.88266 -16.86031 -16.39745 -16.02117 -15.94451 -15.49794 -15.24900 -15.13210 -14.78583 -14.72877 -14.47559 -14.32872 -14.19054 -13.87245 -13.58197 -13.36507 -13.14683 -13.07195 -12.95958 -12.91448 -12.70406 -12.62283 -12.41132 -12.34541 -12.12844 -11.96222 -11.74826 -11.62084 -11.51687 -11.45562 -11.29929 -10.38323 -10.34199 -10.01687 -9.37590 -8.47589 -5.95835 -0.46027 0.17842 1.35571 1.40580 1.41272 1.54946 1.67755 2.04818 2.20530 2.27679 2.28717 2.67725 2.84940 3.20040 3.43233 3.49844 3.56121 3.66785 3.99909 4.04290 4.09197 4.27290 4.36344 4.38015 4.47082 4.56886 4.57811 4.59235 4.69234 4.71421 4.83689 4.91264 5.04046 5.08653 5.14214 5.18581 5.34338 5.40687 5.52547 5.58794 5.85532 5.98004 6.06936 6.29115 6.59432 6.64767 7.12500 7.26445 7.56013 8.11372 8.69958 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009075 B = 0.002952 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.633730 B = 9482.269019 C =11998.149023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.070 3.930 3 N -0.366 5.366 4 O 0.340 5.660 5 N -0.325 5.325 6 C -0.060 4.060 7 C 0.612 3.388 8 O -0.526 6.526 9 N -0.706 5.706 10 C 0.117 3.883 11 C 0.084 3.916 12 H 0.068 0.932 13 N -0.673 5.673 14 C 0.064 3.936 15 C 0.438 3.562 16 O -0.623 6.623 17 N -0.573 5.573 18 C -0.331 4.331 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.919 5.919 22 Si 0.990 3.010 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.271 1.271 26 C -0.079 4.079 27 C -0.142 4.142 28 C -0.146 4.146 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.407 0.593 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.340 0.660 36 H 0.106 0.894 37 H 0.070 0.930 38 H 0.397 0.603 39 H 0.277 0.723 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.043 0.957 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.909 3.144 -11.469 23.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 N -0.094 5.094 4 O 0.116 5.884 5 N -0.044 5.044 6 C -0.225 4.225 7 C 0.394 3.606 8 O -0.401 6.401 9 N -0.358 5.358 10 C -0.005 4.005 11 C -0.026 4.026 12 H 0.086 0.914 13 N -0.308 5.308 14 C -0.068 4.068 15 C 0.225 3.775 16 O -0.509 6.509 17 N -0.210 5.210 18 C -0.461 4.461 19 H 0.095 0.905 20 C -0.212 4.212 21 N -0.560 5.560 22 Si 0.814 3.186 23 H -0.199 1.199 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.099 4.099 27 C -0.199 4.199 28 C -0.204 4.204 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.243 0.757 33 H 0.100 0.900 34 H 0.119 0.881 35 H 0.160 0.840 36 H 0.124 0.876 37 H 0.087 0.913 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.025 3.227 -10.523 22.850 hybrid contribution 1.284 0.359 -0.059 1.334 sum -18.741 3.586 -10.582 21.819 Atomic orbital electron populations 1.20536 0.80565 1.06211 1.05895 1.26766 1.01569 0.84193 0.97130 1.75082 0.91087 1.24275 1.18920 1.85087 1.23686 1.16273 1.63391 1.75399 1.23444 0.93258 1.12276 1.26153 0.88590 0.98637 1.09146 1.16376 0.85407 0.81643 0.77137 1.90803 1.19139 1.79812 1.50373 1.45934 1.09540 1.07305 1.73051 1.21955 0.97610 0.76537 1.04413 1.21937 0.92098 0.96210 0.92344 0.91435 1.60068 1.04332 1.26846 1.39528 1.21615 0.88019 1.03062 0.94091 1.20872 0.82713 0.83545 0.90341 1.90503 1.72225 1.50546 1.37657 1.41926 1.05541 1.55557 1.17959 1.19664 0.89557 1.39608 0.97283 0.90492 1.25996 0.97524 0.96786 1.00854 1.69667 1.11840 1.44488 1.30054 0.84913 0.77791 0.78251 0.77654 1.19918 1.19613 1.19578 1.21035 0.99562 0.92972 0.96308 1.21787 0.99317 1.01210 0.97598 1.21890 1.00278 1.01919 0.96300 0.87501 0.87355 0.87938 0.75665 0.89971 0.88115 0.83973 0.87571 0.91259 0.76958 0.91310 0.91289 0.92210 0.92420 0.93817 0.91750 0.91930 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.22 71.23 0.73 -0.17 16 2 C 0.07 1.35 7.79 45.18 0.35 1.70 16 3 N -0.37 -7.85 12.22 -51.81 -0.63 -8.48 16 4 O 0.34 7.85 11.65 140.85 1.64 9.49 16 5 N -0.32 -7.85 12.13 -52.06 -0.63 -8.48 16 6 C -0.06 -1.36 7.56 44.30 0.34 -1.02 16 7 C 0.61 14.09 7.85 86.92 0.68 14.78 16 8 O -0.53 -13.31 15.96 -3.71 -0.06 -13.37 16 9 N -0.71 -14.87 4.99 -465.55 -2.32 -17.19 16 10 C 0.12 2.22 4.61 86.38 0.40 2.62 16 11 C 0.08 1.67 1.97 44.92 0.09 1.76 16 12 H 0.07 1.18 7.80 -2.39 -0.02 1.17 16 13 N -0.67 -19.25 5.38 -495.54 -2.67 -21.91 16 14 C 0.06 2.05 5.97 85.56 0.51 2.56 16 15 C 0.44 20.26 7.82 87.66 0.69 20.94 16 16 O -0.62 -34.01 15.78 -3.04 -0.05 -34.06 16 17 N -0.57 -28.88 5.29 -306.99 -1.62 -30.50 16 18 C -0.33 -18.74 9.68 84.04 0.81 -17.92 16 19 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 20 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 21 N -0.92 -49.25 13.05 21.66 0.28 -48.97 16 22 Si 0.99 42.97 29.55 68.60 2.03 45.00 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 26 C -0.08 -1.47 2.82 -10.79 -0.03 -1.50 16 27 C -0.14 -2.93 8.60 71.98 0.62 -2.31 16 28 C -0.15 -1.96 8.95 71.98 0.64 -1.32 16 29 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.10 1.27 7.32 -2.39 -0.02 1.25 16 32 H 0.41 8.71 7.23 -92.70 -0.67 8.04 16 33 H 0.08 1.76 6.06 -2.39 -0.01 1.74 16 34 H 0.10 1.59 6.81 -2.39 -0.02 1.58 16 35 H 0.34 10.54 6.41 -89.70 -0.58 9.96 16 36 H 0.11 3.06 7.36 -2.39 -0.02 3.04 16 37 H 0.07 1.89 8.05 -2.39 -0.02 1.87 16 38 H 0.40 18.92 7.90 -92.70 -0.73 18.19 16 39 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 40 H 0.07 1.43 7.35 -2.39 -0.02 1.41 16 41 H 0.06 1.12 6.23 -2.39 -0.01 1.11 16 42 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.04 1.18 7.75 -2.38 -0.02 1.16 16 44 H 0.06 0.77 6.68 -2.39 -0.02 0.76 16 45 H 0.06 0.75 8.14 -2.38 -0.02 0.74 16 46 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -68.82 385.80 1.35 -67.47 By element: Atomic # 1 Polarization: 41.96 SS G_CDS: -0.92 Total: 41.05 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: 6.29 Total: 19.95 kcal Atomic # 7 Polarization: -127.94 SS G_CDS: -7.59 Total: -135.53 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: 1.53 Total: -37.94 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -68.82 1.35 -67.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667525312.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.301 kcal (2) G-P(sol) polarization free energy of solvation -68.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds