Wall clock time and date at job start Tue Mar 31 2020 22:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29951 * 125.30327 * 2 1 4 4 O 1.41883 * 107.41512 * 179.97438 * 3 2 1 5 5 N 1.41876 * 106.38514 * 359.78273 * 4 3 2 6 6 C 1.29953 * 107.41361 * 0.36513 * 5 4 3 7 7 C 1.50700 * 125.30089 * 179.89846 * 6 5 4 8 8 C 1.50702 * 109.46869 * 269.69045 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46506 * 120.00264 * 0.28128 * 10 8 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 13 13 C 1.53002 * 109.47088 * 89.99979 * 12 10 8 14 14 C 1.52995 * 109.47427 * 179.97438 * 13 12 10 15 15 N 1.46894 * 109.47357 * 180.02562 * 14 13 12 16 16 C 1.46908 * 111.00168 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.46995 * 180.02562 * 16 15 14 18 18 O 1.21289 * 120.00330 * 0.02562 * 17 16 15 19 19 N 1.34783 * 119.99896 * 179.97438 * 17 16 15 20 20 C 1.37093 * 120.00159 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99962 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00359 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99623 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00325 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46933 * 60.00250 * 24 22 20 26 26 H 1.48498 * 109.47229 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47085 * 300.00523 * 24 22 20 28 28 H 1.08997 * 109.46833 * 270.00404 * 1 2 3 29 29 H 1.08997 * 109.46860 * 30.00268 * 1 2 3 30 30 H 1.08999 * 109.46902 * 150.00299 * 1 2 3 31 31 H 1.09004 * 109.47210 * 149.69338 * 7 6 5 32 32 H 1.08994 * 109.47551 * 29.68990 * 7 6 5 33 33 H 1.08998 * 109.46921 * 89.99095 * 11 10 8 34 34 H 1.08994 * 109.46996 * 209.99677 * 11 10 8 35 35 H 1.09001 * 109.46578 * 329.99540 * 11 10 8 36 36 H 1.09001 * 109.47567 * 210.00057 * 12 10 8 37 37 H 1.09005 * 109.47076 * 330.00563 * 12 10 8 38 38 H 1.08999 * 109.47707 * 300.00330 * 13 12 10 39 39 H 1.09005 * 109.46685 * 60.00344 * 13 12 10 40 40 H 1.09006 * 109.47343 * 300.00688 * 14 13 12 41 41 H 1.09005 * 109.46868 * 60.00504 * 14 13 12 42 42 H 1.00904 * 111.00423 * 56.05150 * 15 14 13 43 43 H 1.09002 * 109.46659 * 299.99714 * 16 15 14 44 44 H 1.09000 * 109.46818 * 59.99841 * 16 15 14 45 45 H 0.97004 * 119.99600 * 0.02562 * 19 17 16 46 46 H 0.97001 * 119.99987 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6247 0.0006 5 7 3.5710 -0.7935 0.0061 6 6 2.3213 -1.1498 0.0006 7 6 1.8210 -2.5713 0.0014 8 6 1.6542 -3.0459 -1.4192 9 8 1.9163 -2.3031 -2.3415 10 7 1.2196 -4.2978 -1.6649 11 6 0.9035 -5.1953 -0.5509 12 6 1.0633 -4.7612 -3.0458 13 6 2.3713 -5.3964 -3.5219 14 6 2.2078 -5.8809 -4.9638 15 7 3.4634 -6.4913 -5.4206 16 6 3.3437 -6.9687 -6.8048 17 6 4.6479 -7.5876 -7.2372 18 8 5.5848 -7.6276 -6.4679 19 7 4.7730 -8.0977 -8.4785 20 6 5.9596 -8.6603 -8.8721 21 1 6.7940 -8.6952 -8.1874 22 6 6.0884 -9.1867 -10.1516 23 7 5.0728 -9.1447 -10.9845 24 14 7.7049 -9.9539 -10.6876 25 1 8.0308 -11.0956 -9.7956 26 1 7.5837 -10.4371 -12.0865 27 1 8.7855 -8.9386 -10.6069 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 0.8608 -2.6183 0.5152 32 1 2.5398 -3.2093 0.5155 33 1 -0.1455 -5.0801 -0.2781 34 1 1.0898 -6.2264 -0.8510 35 1 1.5309 -4.9469 0.3050 36 1 0.2626 -5.4993 -3.0930 37 1 0.8158 -3.9152 -3.6871 38 1 3.1719 -4.6583 -3.4747 39 1 2.6187 -6.2424 -2.8806 40 1 1.4072 -6.6192 -5.0106 41 1 1.9601 -5.0352 -5.6054 42 1 3.7482 -7.2374 -4.8039 43 1 2.5507 -7.7141 -6.8646 44 1 3.1045 -6.1302 -7.4589 45 1 4.0235 -8.0661 -9.0936 46 1 5.1628 -9.5118 -11.8779 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670300423.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:33 Heat of formation + Delta-G solvation = 20.987605 kcal Electronic energy + Delta-G solvation = -28000.209721 eV Core-core repulsion = 23736.502778 eV Total energy + Delta-G solvation = -4263.706944 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.96707 -40.32699 -38.29898 -36.78632 -35.54528 -35.02390 -33.92770 -33.82062 -32.12339 -31.18114 -29.92793 -29.19842 -27.79048 -26.70698 -24.97667 -23.60461 -22.79747 -21.68165 -21.23119 -19.68217 -19.19647 -17.87573 -17.84291 -17.44851 -16.63299 -16.35092 -16.26312 -15.91092 -15.68060 -14.88659 -14.73240 -14.64166 -14.39459 -14.24927 -14.01318 -13.93323 -13.84565 -13.54312 -13.40439 -13.35901 -13.08167 -12.92859 -12.55829 -12.17185 -12.14955 -12.04553 -11.88871 -11.72909 -11.47432 -11.38943 -11.34567 -11.04145 -11.02016 -10.81046 -10.42942 -10.31870 -10.19848 -9.48632 -9.18979 -8.44799 -8.04209 -7.94304 -6.40196 -3.80988 0.14659 1.46825 2.04497 2.18590 2.48874 2.72471 3.21525 3.26934 3.31645 3.35982 3.85102 3.92540 4.06425 4.11307 4.25483 4.33266 4.46851 4.55526 4.65506 4.71544 4.76293 4.80592 4.84961 5.03038 5.09296 5.12471 5.15057 5.19801 5.25288 5.30915 5.35329 5.40680 5.61682 5.78438 5.90557 6.00167 6.01925 6.21179 6.29529 6.51630 6.78350 7.23278 7.56515 7.60083 7.67589 8.07748 8.63025 9.19329 9.55819 10.07560 10.77500 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020150 B = 0.001576 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.239665 B =17757.536016 C =18446.219875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.085 3.915 3 N -0.277 5.277 4 O 0.031 5.969 5 N -0.257 5.257 6 C 0.092 3.908 7 C -0.079 4.079 8 C 0.517 3.483 9 O -0.521 6.521 10 N -0.612 5.612 11 C 0.071 3.929 12 C 0.117 3.883 13 C -0.133 4.133 14 C 0.064 3.936 15 N -0.670 5.670 16 C 0.051 3.949 17 C 0.440 3.560 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.026 0.974 41 H 0.072 0.928 42 H 0.348 0.652 43 H 0.043 0.957 44 H 0.086 0.914 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.316 10.783 25.183 33.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 N -0.022 5.022 4 O -0.111 6.111 5 N 0.001 4.999 6 C -0.092 4.092 7 C -0.120 4.120 8 C 0.303 3.697 9 O -0.397 6.397 10 N -0.345 5.345 11 C -0.072 4.072 12 C -0.005 4.005 13 C -0.172 4.172 14 C -0.067 4.067 15 N -0.302 5.302 16 C -0.081 4.081 17 C 0.226 3.774 18 O -0.467 6.467 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.759 3.241 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.044 0.956 41 H 0.091 0.909 42 H 0.167 0.833 43 H 0.061 0.939 44 H 0.104 0.896 45 H 0.225 0.775 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.070 12.515 24.822 32.621 hybrid contribution -0.770 -1.737 -0.652 2.009 sum -17.840 10.778 24.170 31.916 Atomic orbital electron populations 1.20573 0.84252 1.05576 1.04627 1.24499 1.00278 0.88806 0.96152 1.79923 0.89129 1.19594 1.13599 1.93416 1.20090 1.13151 1.84454 1.79947 1.17299 0.91534 1.11169 1.23761 0.90136 0.97628 0.97666 1.20392 1.04995 0.89278 0.97339 1.20071 0.77559 0.81928 0.90187 1.90818 1.48572 1.54431 1.45835 1.47790 1.66361 1.12496 1.07889 1.21936 1.01042 0.95061 0.89164 1.21524 0.97772 1.00033 0.81198 1.21897 0.98047 1.01210 0.96015 1.21845 0.90841 0.98720 0.95261 1.60012 1.29860 1.37619 1.02704 1.21669 0.96555 0.99012 0.90897 1.19823 0.89565 0.84367 0.83675 1.90521 1.41015 1.61804 1.53407 1.41857 1.14542 1.51958 1.11684 1.19662 0.91488 1.33838 0.97975 0.87980 1.25263 0.99025 0.97906 0.95757 1.69606 1.30872 1.46379 1.07506 0.85907 0.81453 0.79400 0.77390 1.19935 1.20977 1.19878 0.88428 0.88910 0.89006 0.85348 0.85548 0.91921 0.90229 0.90815 0.90139 0.89414 0.90383 0.91831 0.95557 0.90925 0.83267 0.93909 0.89576 0.77453 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.31 10.05 36.01 0.36 0.05 16 2 C 0.09 0.70 7.19 -82.38 -0.59 0.11 16 3 N -0.28 -3.15 12.98 33.74 0.44 -2.71 16 4 O 0.03 0.42 13.71 12.02 0.16 0.58 16 5 N -0.26 -3.15 12.98 33.74 0.44 -2.72 16 6 C 0.09 0.81 5.68 -82.38 -0.47 0.34 16 7 C -0.08 -0.38 4.42 -29.03 -0.13 -0.51 16 8 C 0.52 4.30 7.67 -10.98 -0.08 4.21 16 9 O -0.52 -6.96 15.61 5.55 0.09 -6.87 16 10 N -0.61 -3.85 2.87 -181.57 -0.52 -4.37 16 11 C 0.07 0.16 10.25 59.85 0.61 0.77 16 12 C 0.12 0.90 5.41 -4.04 -0.02 0.87 16 13 C -0.13 -1.37 5.80 -26.73 -0.16 -1.53 16 14 C 0.06 0.76 5.68 -3.83 -0.02 0.74 16 15 N -0.67 -11.14 6.13 -115.06 -0.70 -11.84 16 16 C 0.05 0.93 6.17 -4.97 -0.03 0.90 16 17 C 0.44 10.67 7.82 -10.98 -0.09 10.58 16 18 O -0.58 -16.28 15.78 5.55 0.09 -16.19 16 19 N -0.56 -14.57 5.29 -10.96 -0.06 -14.62 16 20 C -0.30 -8.52 9.68 -14.94 -0.14 -8.66 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.78 13.05 55.50 0.72 -24.06 16 24 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 28 H 0.10 0.08 8.14 -51.93 -0.42 -0.35 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.19 7.78 -51.93 -0.40 -0.22 16 31 H 0.13 0.04 7.74 -51.93 -0.40 -0.36 16 32 H 0.13 0.40 7.40 -51.93 -0.38 0.02 16 33 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 34 H 0.08 0.18 8.07 -51.93 -0.42 -0.24 16 35 H 0.07 0.05 6.43 -51.93 -0.33 -0.29 16 36 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 37 H 0.09 0.81 7.42 -51.93 -0.39 0.42 16 38 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.35 5.86 8.43 -39.29 -0.33 5.53 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 45 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 46 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 398.57 15.07 6.01 6.01 Total: -1.00 -38.60 398.57 -5.93 -44.53 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -6.72 Total: 7.57 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: -0.85 Total: 8.38 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: 0.32 Total: -60.32 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: 0.34 Total: -22.48 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -38.60 -5.93 -44.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670300423.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.519 kcal (2) G-P(sol) polarization free energy of solvation -38.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds