Wall clock time and date at job start Tue Mar 31 2020 22:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29951 * 125.30327 * 2 1 4 4 O 1.41883 * 107.41512 * 179.97438 * 3 2 1 5 5 N 1.41876 * 106.38514 * 359.78273 * 4 3 2 6 6 C 1.29953 * 107.41361 * 0.36513 * 5 4 3 7 7 C 1.50700 * 125.30089 * 179.89846 * 6 5 4 8 8 C 1.50702 * 109.46869 * 269.69045 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46506 * 120.00264 * 0.28128 * 10 8 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 13 13 C 1.53002 * 109.47088 * 89.99979 * 12 10 8 14 14 C 1.52995 * 109.47427 * 179.97438 * 13 12 10 15 15 N 1.46894 * 109.47357 * 180.02562 * 14 13 12 16 16 C 1.46908 * 111.00168 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.46995 * 180.02562 * 16 15 14 18 18 O 1.21289 * 120.00330 * 0.02562 * 17 16 15 19 19 N 1.34783 * 119.99896 * 179.97438 * 17 16 15 20 20 C 1.37093 * 120.00159 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99962 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00359 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99623 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00325 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46933 * 60.00250 * 24 22 20 26 26 H 1.48498 * 109.47229 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47085 * 300.00523 * 24 22 20 28 28 H 1.08997 * 109.46833 * 270.00404 * 1 2 3 29 29 H 1.08997 * 109.46860 * 30.00268 * 1 2 3 30 30 H 1.08999 * 109.46902 * 150.00299 * 1 2 3 31 31 H 1.09004 * 109.47210 * 149.69338 * 7 6 5 32 32 H 1.08994 * 109.47551 * 29.68990 * 7 6 5 33 33 H 1.08998 * 109.46921 * 89.99095 * 11 10 8 34 34 H 1.08994 * 109.46996 * 209.99677 * 11 10 8 35 35 H 1.09001 * 109.46578 * 329.99540 * 11 10 8 36 36 H 1.09001 * 109.47567 * 210.00057 * 12 10 8 37 37 H 1.09005 * 109.47076 * 330.00563 * 12 10 8 38 38 H 1.08999 * 109.47707 * 300.00330 * 13 12 10 39 39 H 1.09005 * 109.46685 * 60.00344 * 13 12 10 40 40 H 1.09006 * 109.47343 * 300.00688 * 14 13 12 41 41 H 1.09005 * 109.46868 * 60.00504 * 14 13 12 42 42 H 1.00904 * 111.00423 * 56.05150 * 15 14 13 43 43 H 1.09002 * 109.46659 * 299.99714 * 16 15 14 44 44 H 1.09000 * 109.46818 * 59.99841 * 16 15 14 45 45 H 0.97004 * 119.99600 * 0.02562 * 19 17 16 46 46 H 0.97001 * 119.99987 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6247 0.0006 5 7 3.5710 -0.7935 0.0061 6 6 2.3213 -1.1498 0.0006 7 6 1.8210 -2.5713 0.0014 8 6 1.6542 -3.0459 -1.4192 9 8 1.9163 -2.3031 -2.3415 10 7 1.2196 -4.2978 -1.6649 11 6 0.9035 -5.1953 -0.5509 12 6 1.0633 -4.7612 -3.0458 13 6 2.3713 -5.3964 -3.5219 14 6 2.2078 -5.8809 -4.9638 15 7 3.4634 -6.4913 -5.4206 16 6 3.3437 -6.9687 -6.8048 17 6 4.6479 -7.5876 -7.2372 18 8 5.5848 -7.6276 -6.4679 19 7 4.7730 -8.0977 -8.4785 20 6 5.9596 -8.6603 -8.8721 21 1 6.7940 -8.6952 -8.1874 22 6 6.0884 -9.1867 -10.1516 23 7 5.0728 -9.1447 -10.9845 24 14 7.7049 -9.9539 -10.6876 25 1 8.0308 -11.0956 -9.7956 26 1 7.5837 -10.4371 -12.0865 27 1 8.7855 -8.9386 -10.6069 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 0.8608 -2.6183 0.5152 32 1 2.5398 -3.2093 0.5155 33 1 -0.1455 -5.0801 -0.2781 34 1 1.0898 -6.2264 -0.8510 35 1 1.5309 -4.9469 0.3050 36 1 0.2626 -5.4993 -3.0930 37 1 0.8158 -3.9152 -3.6871 38 1 3.1719 -4.6583 -3.4747 39 1 2.6187 -6.2424 -2.8806 40 1 1.4072 -6.6192 -5.0106 41 1 1.9601 -5.0352 -5.6054 42 1 3.7482 -7.2374 -4.8039 43 1 2.5507 -7.7141 -6.8646 44 1 3.1045 -6.1302 -7.4589 45 1 4.0235 -8.0661 -9.0936 46 1 5.1628 -9.5118 -11.8779 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670300423.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:32 Heat of formation + Delta-G solvation = -11.054031 kcal Electronic energy + Delta-G solvation = -28001.599151 eV Core-core repulsion = 23736.502778 eV Total energy + Delta-G solvation = -4265.096373 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.65131 -40.94000 -40.17669 -37.70960 -36.54094 -35.87337 -35.68295 -34.53559 -33.36375 -32.94830 -30.62465 -29.65123 -28.72211 -27.53872 -26.41356 -24.87140 -23.55779 -22.56924 -21.88814 -21.08824 -20.20774 -19.91832 -18.38336 -18.09052 -17.86706 -17.18763 -17.14620 -16.86963 -16.69757 -16.49871 -15.99852 -15.64875 -15.40926 -15.35885 -15.09685 -14.83102 -14.59143 -14.24496 -14.19433 -14.10753 -13.76751 -13.55651 -13.37115 -13.28037 -13.18759 -12.94561 -12.88840 -12.82373 -12.73458 -12.55140 -12.45797 -12.42689 -12.14393 -12.13008 -11.69059 -11.67069 -11.52280 -10.98009 -10.38714 -10.03932 -9.69817 -9.32593 -8.48278 -5.97414 -0.57474 0.86143 1.38634 1.40678 1.44440 1.48359 1.51805 1.94365 2.02670 2.10957 2.28307 2.77507 2.93478 3.18676 3.38615 3.51593 3.61177 3.89446 3.99625 4.12407 4.13049 4.25937 4.31966 4.34227 4.40373 4.46404 4.50536 4.54002 4.57916 4.64066 4.65031 4.71409 4.76653 4.88209 5.08048 5.09788 5.16396 5.21311 5.38893 5.53803 5.80153 5.87986 6.09965 6.31192 6.41380 6.58199 7.05672 7.10384 7.53652 8.09235 8.68810 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020150 B = 0.001576 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.239665 B =17757.536016 C =18446.219875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.099 3.901 3 N -0.311 5.311 4 O -0.022 6.022 5 N -0.299 5.299 6 C 0.103 3.897 7 C -0.074 4.074 8 C 0.511 3.489 9 O -0.585 6.585 10 N -0.606 5.606 11 C 0.060 3.940 12 C 0.122 3.878 13 C -0.123 4.123 14 C 0.066 3.934 15 N -0.693 5.693 16 C 0.066 3.934 17 C 0.435 3.565 18 O -0.626 6.626 19 N -0.572 5.572 20 C -0.338 4.338 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.994 3.006 25 H -0.270 1.270 26 H -0.269 1.269 27 H -0.274 1.274 28 H 0.134 0.866 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.186 0.814 32 H 0.148 0.852 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.068 0.932 38 H 0.036 0.964 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.345 0.655 43 H 0.073 0.927 44 H 0.100 0.900 45 H 0.397 0.603 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.448 9.034 26.500 35.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.084 4.084 3 N -0.061 5.061 4 O -0.155 6.155 5 N -0.044 5.044 6 C -0.081 4.081 7 C -0.114 4.114 8 C 0.299 3.701 9 O -0.465 6.465 10 N -0.337 5.337 11 C -0.081 4.081 12 C -0.002 4.002 13 C -0.162 4.162 14 C -0.064 4.064 15 N -0.325 5.325 16 C -0.066 4.066 17 C 0.222 3.778 18 O -0.513 6.513 19 N -0.209 5.209 20 C -0.467 4.467 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.559 5.559 24 Si 0.818 3.182 25 H -0.195 1.195 26 H -0.193 1.193 27 H -0.200 1.200 28 H 0.152 0.848 29 H 0.110 0.890 30 H 0.132 0.868 31 H 0.203 0.797 32 H 0.165 0.835 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.133 0.867 37 H 0.086 0.914 38 H 0.055 0.945 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.164 0.836 43 H 0.091 0.909 44 H 0.118 0.882 45 H 0.231 0.769 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.209 10.770 26.163 34.769 hybrid contribution 0.070 -1.271 -1.031 1.639 sum -20.139 9.499 25.132 33.577 Atomic orbital electron populations 1.20919 0.80374 1.06595 1.07165 1.25369 1.02321 0.87771 0.92966 1.79879 0.88644 1.21179 1.16370 1.93371 1.21877 1.14040 1.86182 1.79881 1.19652 0.91169 1.13716 1.24513 0.89244 0.99699 0.94661 1.20713 1.08299 0.86685 0.95683 1.20625 0.76579 0.82080 0.90832 1.90805 1.51469 1.56314 1.47905 1.47892 1.65045 1.12369 1.08425 1.22312 1.03346 0.94261 0.88194 1.21426 0.96898 0.99894 0.81938 1.21788 0.98425 1.00468 0.95486 1.21921 0.89611 0.98908 0.95917 1.60002 1.32968 1.37630 1.01950 1.21521 0.93324 0.99745 0.92005 1.20936 0.91266 0.82981 0.82580 1.90486 1.43252 1.63126 1.54390 1.41924 1.14076 1.52381 1.12512 1.19641 0.92179 1.36258 0.98639 0.90420 1.26054 1.02371 0.97620 0.95169 1.69663 1.32234 1.46227 1.07822 0.84975 0.77250 0.78428 0.77589 1.19519 1.19288 1.19983 0.84764 0.88988 0.86832 0.79654 0.83462 0.88967 0.89957 0.88806 0.86699 0.91369 0.94497 0.90778 0.92537 0.91331 0.83631 0.90928 0.88242 0.76890 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.33 10.05 71.24 0.72 0.38 16 2 C 0.10 1.54 7.19 43.49 0.31 1.85 16 3 N -0.31 -7.45 12.98 -47.16 -0.61 -8.07 16 4 O -0.02 -0.66 13.71 70.15 0.96 0.30 16 5 N -0.30 -7.75 12.98 -47.16 -0.61 -8.36 16 6 C 0.10 1.74 5.68 43.49 0.25 1.98 16 7 C -0.07 -0.47 4.42 29.10 0.13 -0.34 16 8 C 0.51 7.56 7.67 87.66 0.67 8.23 16 9 O -0.58 -15.84 15.61 -3.04 -0.05 -15.89 16 10 N -0.61 -5.81 2.87 -846.74 -2.43 -8.25 16 11 C 0.06 -0.02 10.25 127.77 1.31 1.29 16 12 C 0.12 1.59 5.41 86.38 0.47 2.05 16 13 C -0.12 -2.41 5.80 30.59 0.18 -2.23 16 14 C 0.07 1.47 5.68 86.30 0.49 1.96 16 15 N -0.69 -22.61 6.13 -517.92 -3.17 -25.79 16 16 C 0.07 2.33 6.17 85.55 0.53 2.86 16 17 C 0.43 21.34 7.82 87.66 0.69 22.03 16 18 O -0.63 -35.94 15.78 -3.06 -0.05 -35.98 16 19 N -0.57 -30.00 5.29 -306.98 -1.62 -31.63 16 20 C -0.34 -19.58 9.68 84.04 0.81 -18.77 16 21 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 22 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 23 N -0.92 -50.00 13.05 21.66 0.28 -49.71 16 24 Si 0.99 43.52 29.55 68.60 2.03 45.55 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 27 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 28 H 0.13 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.11 -0.03 7.78 -2.39 -0.02 -0.05 16 31 H 0.19 -1.00 7.74 -2.38 -0.02 -1.02 16 32 H 0.15 0.41 7.40 -2.39 -0.02 0.39 16 33 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 34 H 0.08 0.00 8.07 -2.39 -0.02 -0.02 16 35 H 0.09 -0.37 6.43 -2.39 -0.02 -0.38 16 36 H 0.11 0.74 8.07 -2.39 -0.02 0.72 16 37 H 0.07 1.20 7.42 -2.38 -0.02 1.18 16 38 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 41 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 42 H 0.34 11.48 8.43 -89.69 -0.76 10.73 16 43 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 45 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16 46 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -92.22 398.57 1.28 -90.94 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: -0.46 Total: 25.77 kcal Atomic # 6 Polarization: 14.08 SS G_CDS: 7.01 Total: 21.10 kcal Atomic # 7 Polarization: -123.63 SS G_CDS: -8.17 Total: -131.80 kcal Atomic # 8 Polarization: -52.43 SS G_CDS: 0.87 Total: -51.56 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -92.22 1.28 -90.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670300423.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.891 kcal (2) G-P(sol) polarization free energy of solvation -92.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds