Wall clock time and date at job start Tue Mar 31 2020 22:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47182 * 2 1 4 4 C 1.38250 * 120.00276 * 93.80093 * 3 2 1 5 5 C 1.38207 * 120.00134 * 180.22982 * 4 3 2 6 6 C 1.38262 * 120.00123 * 359.81907 * 5 4 3 7 7 C 1.38211 * 119.99621 * 359.96594 * 6 5 4 8 8 C 1.38215 * 119.99519 * 273.59058 * 3 2 1 9 9 C 1.50693 * 120.00103 * 359.97438 * 8 3 2 10 10 H 1.09000 * 109.47516 * 33.07053 * 9 8 3 11 11 C 1.53007 * 109.47059 * 273.06732 * 9 8 3 12 12 N 1.46503 * 109.47010 * 184.24483 * 11 9 8 13 13 C 1.34768 * 119.99898 * 180.02562 * 12 11 9 14 14 O 1.21516 * 119.99972 * 359.97438 * 13 12 11 15 15 C 1.48153 * 120.00064 * 180.02562 * 13 12 11 16 16 C 1.39812 * 120.92209 * 359.71352 * 15 13 12 17 17 C 1.38149 * 119.00093 * 179.79520 * 16 15 13 18 18 N 1.31810 * 120.89747 * 0.49648 * 17 16 15 19 19 C 1.31819 * 122.04595 * 359.73225 * 18 17 16 20 20 C 1.38148 * 120.89821 * 0.02562 * 19 18 17 21 21 N 1.46509 * 109.47240 * 153.07507 * 9 8 3 22 22 C 1.36937 * 119.99319 * 274.99926 * 21 9 8 23 23 H 1.08004 * 120.00607 * 359.97438 * 22 21 9 24 24 C 1.38817 * 119.99717 * 180.02562 * 22 21 9 25 25 N 1.31624 * 119.99688 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00001 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47187 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47581 * 119.99842 * 26 24 22 29 29 H 1.48504 * 109.46936 * 239.99544 * 26 24 22 30 30 H 1.08998 * 109.47270 * 174.64024 * 1 2 3 31 31 H 1.09003 * 109.47119 * 294.64372 * 1 2 3 32 32 H 1.08999 * 109.46747 * 54.64288 * 1 2 3 33 33 H 1.09000 * 109.47349 * 240.00003 * 2 1 3 34 34 H 1.09005 * 109.47340 * 119.99536 * 2 1 3 35 35 H 1.08003 * 120.00010 * 0.06809 * 4 3 2 36 36 H 1.08004 * 120.00304 * 179.82978 * 5 4 3 37 37 H 1.07998 * 120.00377 * 179.97438 * 6 5 4 38 38 H 1.07997 * 120.00233 * 180.02562 * 7 6 5 39 39 H 1.08995 * 109.47515 * 304.24634 * 11 9 8 40 40 H 1.08995 * 109.46837 * 64.25042 * 11 9 8 41 41 H 0.97005 * 119.99890 * 0.02562 * 12 11 9 42 42 H 1.07997 * 120.49949 * 0.02562 * 16 15 13 43 43 H 1.08003 * 119.55181 * 180.23162 * 17 16 15 44 44 H 1.08005 * 119.54808 * 180.02562 * 19 18 17 45 45 H 1.08001 * 120.49723 * 179.97438 * 20 19 18 46 46 H 0.96996 * 120.00381 * 94.99174 * 21 9 8 47 47 H 0.96997 * 119.99449 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3376 2.0462 1.1946 5 6 2.7938 3.3508 1.1949 6 6 2.9484 4.0293 0.0002 7 6 2.6475 3.4027 -1.1943 8 6 2.1920 2.0973 -1.1947 9 6 1.8643 1.4139 -2.4972 10 1 1.0346 0.7233 -2.3465 11 6 3.0891 0.6400 -2.9893 12 7 2.8040 0.0594 -4.3038 13 6 3.7439 -0.6707 -4.9362 14 8 4.8280 -0.8469 -4.4162 15 6 3.4559 -1.2574 -6.2657 16 6 2.2136 -1.0709 -6.8795 17 6 1.9892 -1.6323 -8.1216 18 7 2.9231 -2.3427 -8.7220 19 6 4.1057 -2.5467 -8.1766 20 6 4.4168 -2.0179 -6.9389 21 7 1.4884 2.4187 -3.4949 22 6 0.1973 2.8707 -3.5584 23 1 -0.5439 2.4861 -2.8735 24 6 -0.1592 3.8224 -4.5041 25 7 0.7440 4.2906 -5.3392 26 14 -1.9201 4.4394 -4.5904 27 1 -2.7339 3.7611 -3.5497 28 1 -1.9427 5.9061 -4.3591 29 1 -2.4840 4.1411 -5.9315 30 1 -0.3634 -1.0231 -0.0960 31 1 -0.3633 0.4285 0.9341 32 1 -0.3633 0.5947 -0.8381 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.2171 1.5160 2.1278 36 1 3.0297 3.8402 2.1283 37 1 3.3045 5.0489 0.0004 38 1 2.7686 3.9325 -2.1276 39 1 3.9394 1.3174 -3.0680 40 1 3.3232 -0.1567 -2.2833 41 1 1.9387 0.2004 -4.7190 42 1 1.4423 -0.4935 -6.3915 43 1 1.0341 -1.4906 -8.6055 44 1 4.8414 -3.1352 -8.7047 45 1 5.3877 -2.1894 -6.4979 46 1 2.1539 2.7639 -4.1102 47 1 0.4950 4.9559 -5.9997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672171155.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:20 Heat of formation + Delta-G solvation = 14.557114 kcal Electronic energy + Delta-G solvation = -29112.306172 eV Core-core repulsion = 25259.169645 eV Total energy + Delta-G solvation = -3853.136528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.63378 -40.74928 -39.95338 -37.46271 -35.40122 -35.02360 -33.96422 -33.25682 -32.19858 -31.15048 -30.26188 -29.08238 -26.22975 -25.31649 -24.68252 -24.45306 -23.88097 -21.90113 -21.74235 -21.07274 -19.55854 -19.03313 -17.82139 -17.27213 -17.16036 -16.68083 -16.52013 -16.42138 -16.23331 -16.13806 -15.67741 -15.26313 -14.96301 -14.80193 -14.63775 -14.56459 -14.40491 -14.36884 -14.15122 -13.86580 -13.69298 -12.99598 -12.91822 -12.84620 -12.68914 -12.62575 -12.34377 -12.12797 -12.03432 -11.82426 -11.64147 -11.45743 -11.40680 -10.99637 -10.97867 -10.54820 -10.19753 -10.15970 -9.56269 -9.38066 -9.03131 -7.91856 -5.21238 -0.35372 0.09635 0.56592 0.65523 1.46949 1.50625 1.57369 1.78330 2.03534 2.56043 2.84737 2.97836 3.41149 3.49705 3.50906 3.76029 3.81923 3.95357 3.98985 4.00637 4.07159 4.08934 4.25896 4.31252 4.36816 4.41143 4.54307 4.58010 4.60386 4.73640 4.80061 4.80259 4.82071 4.84528 4.99328 5.05114 5.11740 5.17303 5.23784 5.34809 5.37127 5.46742 5.57544 5.60896 5.72035 5.80100 5.97335 6.25998 6.30334 6.40733 6.88301 7.02084 7.36532 8.03127 8.30200 9.30108 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008360 B = 0.004064 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3348.650246 B = 6888.130123 C = 8981.368079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 C -0.087 4.087 4 C -0.127 4.127 5 C -0.125 4.125 6 C -0.144 4.144 7 C -0.105 4.105 8 C -0.102 4.102 9 C 0.205 3.795 10 H 0.077 0.923 11 C 0.129 3.871 12 N -0.699 5.699 13 C 0.553 3.447 14 O -0.572 6.572 15 C -0.100 4.100 16 C -0.138 4.138 17 C 0.094 3.906 18 N -0.487 5.487 19 C 0.096 3.904 20 C -0.122 4.122 21 N -0.718 5.718 22 C -0.224 4.224 23 H 0.073 0.927 24 C -0.059 4.059 25 N -0.961 5.961 26 Si 0.957 3.043 27 H -0.270 1.270 28 H -0.304 1.304 29 H -0.293 1.293 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.037 0.963 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.123 0.877 38 H 0.096 0.904 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.413 0.587 42 H 0.148 0.852 43 H 0.186 0.814 44 H 0.194 0.806 45 H 0.152 0.848 46 H 0.374 0.626 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.128 -12.408 5.681 14.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 C -0.088 4.088 4 C -0.145 4.145 5 C -0.143 4.143 6 C -0.162 4.162 7 C -0.124 4.124 8 C -0.105 4.105 9 C 0.095 3.905 10 H 0.094 0.906 11 C 0.005 3.995 12 N -0.350 5.350 13 C 0.341 3.659 14 O -0.453 6.453 15 C -0.112 4.112 16 C -0.158 4.158 17 C -0.062 4.062 18 N -0.196 5.196 19 C -0.060 4.060 20 C -0.143 4.143 21 N -0.358 5.358 22 C -0.355 4.355 23 H 0.091 0.909 24 C -0.252 4.252 25 N -0.611 5.611 26 Si 0.788 3.212 27 H -0.194 1.194 28 H -0.232 1.232 29 H -0.221 1.221 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.141 0.859 38 H 0.115 0.885 39 H 0.068 0.932 40 H 0.102 0.898 41 H 0.251 0.749 42 H 0.165 0.835 43 H 0.203 0.797 44 H 0.211 0.789 45 H 0.170 0.830 46 H 0.207 0.793 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.485 -12.861 5.289 14.336 hybrid contribution -0.824 1.884 0.120 2.060 sum 2.661 -10.977 5.409 12.523 Atomic orbital electron populations 1.21718 0.94583 1.02159 1.01632 1.20601 0.96312 0.91681 1.03442 1.20015 0.99201 0.97169 0.92393 1.21257 1.00137 0.95283 0.97817 1.21344 0.99865 0.95129 0.97990 1.21303 1.01740 1.00360 0.92840 1.21004 0.98204 0.95229 0.97923 1.20679 0.98916 0.94951 0.95959 1.19543 0.94485 0.90030 0.86396 0.90551 1.21520 0.97480 0.96769 0.83724 1.45848 1.17787 1.51027 1.20318 1.18509 0.83804 0.78438 0.85197 1.90723 1.24586 1.61871 1.68115 1.20398 0.96238 0.99873 0.94645 1.22569 0.96591 0.99444 0.97242 1.23162 0.99292 0.92217 0.91505 1.67646 1.02289 1.13846 1.35858 1.23283 0.94038 0.96745 0.91971 1.22461 1.00298 0.95555 0.95957 1.42488 1.08452 1.47195 1.37669 1.19414 0.87171 1.16812 1.12142 0.90946 1.25284 1.00307 1.00576 0.99074 1.69798 1.33880 1.34194 1.23266 0.85323 0.81488 0.77239 0.77181 1.19413 1.23157 1.22064 0.90879 0.92295 0.94410 0.91288 0.89136 0.83793 0.83937 0.85869 0.88538 0.93214 0.89845 0.74921 0.83452 0.79747 0.78873 0.83038 0.79296 0.94256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.67 71.98 0.70 -2.58 16 2 C -0.08 -1.92 5.37 29.85 0.16 -1.76 16 3 C -0.09 -2.51 5.13 -19.87 -0.10 -2.61 16 4 C -0.13 -3.25 9.69 22.27 0.22 -3.03 16 5 C -0.13 -3.32 10.05 22.27 0.22 -3.10 16 6 C -0.14 -4.60 10.05 22.27 0.22 -4.37 16 7 C -0.11 -3.97 9.32 22.27 0.21 -3.76 16 8 C -0.10 -3.54 5.01 -19.87 -0.10 -3.64 16 9 C 0.20 7.25 1.96 44.24 0.09 7.33 16 10 H 0.08 2.63 5.67 -2.39 -0.01 2.62 16 11 C 0.13 4.28 5.08 86.38 0.44 4.72 16 12 N -0.70 -22.25 5.35 -465.68 -2.49 -24.75 16 13 C 0.55 18.09 7.80 86.88 0.68 18.76 16 14 O -0.57 -21.72 16.45 -3.77 -0.06 -21.78 16 15 C -0.10 -2.78 5.91 -19.88 -0.12 -2.90 16 16 C -0.14 -3.41 9.62 22.63 0.22 -3.20 16 17 C 0.09 2.12 11.17 84.67 0.95 3.07 16 18 N -0.49 -11.43 10.34 -196.00 -2.03 -13.46 16 19 C 0.10 1.97 11.17 84.67 0.95 2.92 16 20 C -0.12 -2.91 9.68 22.63 0.22 -2.69 16 21 N -0.72 -31.58 3.38 -326.47 -1.10 -32.68 16 22 C -0.22 -11.05 9.92 84.03 0.83 -10.21 16 23 H 0.07 3.53 7.83 -2.91 -0.02 3.51 16 24 C -0.06 -3.13 5.50 84.86 0.47 -2.66 16 25 N -0.96 -54.49 13.06 21.65 0.28 -54.20 16 26 Si 0.96 43.62 29.55 68.60 2.03 45.64 16 27 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 28 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 29 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.04 1.06 7.11 -2.39 -0.02 1.04 16 33 H 0.07 1.62 5.70 -2.39 -0.01 1.61 16 34 H 0.09 1.66 8.06 -2.38 -0.02 1.64 16 35 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 36 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16 37 H 0.12 3.52 8.06 -2.91 -0.02 3.50 16 38 H 0.10 4.23 7.31 -2.91 -0.02 4.21 16 39 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.08 2.54 6.96 -2.39 -0.02 2.52 16 41 H 0.41 12.92 6.31 -92.70 -0.58 12.33 16 42 H 0.15 3.49 6.54 -2.91 -0.02 3.47 16 43 H 0.19 3.14 8.06 -2.91 -0.02 3.11 16 44 H 0.19 2.51 8.06 -2.91 -0.02 2.49 16 45 H 0.15 3.37 7.74 -2.91 -0.02 3.35 16 46 H 0.37 18.33 7.80 -92.71 -0.72 17.61 16 47 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -64.60 391.59 2.57 -62.04 By element: Atomic # 1 Polarization: 49.20 SS G_CDS: -0.30 Total: 48.90 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 6.24 Total: -9.71 kcal Atomic # 7 Polarization: -119.75 SS G_CDS: -5.34 Total: -125.09 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.06 Total: -21.78 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -64.60 2.57 -62.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672171155.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.593 kcal (2) G-P(sol) polarization free energy of solvation -64.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds