Wall clock time and date at job start Tue Mar 31 2020 22:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.47273 * 2 1 4 4 C 1.38259 * 119.99724 * 264.99937 * 3 2 1 5 5 C 1.38217 * 119.99608 * 180.02562 * 4 3 2 6 6 C 1.38260 * 120.00022 * 359.95795 * 5 4 3 7 7 C 1.38212 * 120.00133 * 359.97438 * 6 5 4 8 8 C 1.38212 * 119.99884 * 84.73162 * 3 2 1 9 9 C 1.50697 * 120.00088 * 359.97438 * 8 3 2 10 10 H 1.09001 * 109.47360 * 41.91994 * 9 8 3 11 11 C 1.52997 * 109.47262 * 161.92330 * 9 8 3 12 12 N 1.46500 * 109.47036 * 175.00019 * 11 9 8 13 13 C 1.34778 * 119.99950 * 180.02562 * 12 11 9 14 14 O 1.21514 * 119.99841 * 359.97438 * 13 12 11 15 15 C 1.48151 * 120.00233 * 179.97438 * 13 12 11 16 16 C 1.39822 * 120.91900 * 359.72005 * 15 13 12 17 17 C 1.38152 * 118.99863 * 179.79625 * 16 15 13 18 18 N 1.31817 * 120.89561 * 0.48529 * 17 16 15 19 19 C 1.31813 * 122.04744 * 359.74340 * 18 17 16 20 20 C 1.38147 * 120.89791 * 0.02562 * 19 18 17 21 21 N 1.46500 * 109.46916 * 281.92124 * 9 8 3 22 22 C 1.36940 * 120.00340 * 303.84109 * 21 9 8 23 23 H 1.08004 * 119.99579 * 5.16608 * 22 21 9 24 24 C 1.38810 * 119.99997 * 185.16870 * 22 21 9 25 25 N 1.31612 * 120.00246 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99581 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47305 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47329 * 120.00180 * 26 24 22 29 29 H 1.48504 * 109.47215 * 240.00121 * 26 24 22 30 30 H 1.08998 * 109.47175 * 59.99477 * 1 2 3 31 31 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46329 * 299.99951 * 1 2 3 33 33 H 1.08998 * 109.47175 * 120.00523 * 2 1 3 34 34 H 1.08999 * 109.46329 * 240.00048 * 2 1 3 35 35 H 1.07996 * 120.00480 * 359.97438 * 4 3 2 36 36 H 1.07999 * 119.99797 * 179.97438 * 5 4 3 37 37 H 1.07999 * 119.99737 * 180.02562 * 6 5 4 38 38 H 1.07992 * 120.00373 * 180.02562 * 7 6 5 39 39 H 1.08997 * 109.47293 * 294.99801 * 11 9 8 40 40 H 1.08997 * 109.47381 * 54.99632 * 11 9 8 41 41 H 0.96993 * 120.00495 * 359.97438 * 12 11 9 42 42 H 1.07991 * 120.50081 * 359.97438 * 16 15 13 43 43 H 1.07997 * 119.54951 * 180.22623 * 17 16 15 44 44 H 1.08000 * 119.55071 * 180.02562 * 19 18 17 45 45 H 1.08001 * 120.50042 * 179.97438 * 20 19 18 46 46 H 0.97005 * 120.00191 * 123.83921 * 21 9 8 47 47 H 0.97006 * 120.00366 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3612 2.0377 -1.1928 5 6 2.8225 3.3406 -1.1928 6 6 2.9542 4.0273 0.0000 7 6 2.6241 3.4110 1.1923 8 6 2.1591 2.1089 1.1919 9 6 1.7944 1.4387 2.4914 10 1 2.1631 0.4129 2.4872 11 6 2.4279 2.2036 3.6552 12 7 1.9772 1.6245 4.9231 13 6 2.4091 2.1405 6.0909 14 8 3.1726 3.0858 6.0921 15 6 1.9529 1.5552 7.3732 16 6 1.0700 0.4712 7.3944 17 6 0.6737 -0.0460 8.6126 18 7 1.1089 0.4745 9.7428 19 6 1.9378 1.4990 9.7675 20 6 2.3886 2.0753 8.5957 21 7 0.3376 1.4333 2.6460 22 6 -0.3602 2.6106 2.6000 23 1 0.1514 3.5328 2.3670 24 6 -1.7251 2.6188 2.8530 25 7 -2.3486 1.4950 3.1365 26 14 -2.6767 4.2250 2.7909 27 1 -1.7513 5.3359 2.4524 28 1 -3.7375 4.1322 1.7558 29 1 -3.2982 4.4836 4.1146 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.8932 -0.5138 -0.8900 35 1 2.2585 1.5013 -2.1245 36 1 3.0798 3.8224 -2.1245 37 1 3.3142 5.0455 0.0000 38 1 2.7266 3.9474 2.1240 39 1 3.5135 2.1323 3.5888 40 1 2.1290 3.2507 3.6074 41 1 1.3675 0.8702 4.9223 42 1 0.7057 0.0429 6.4725 43 1 -0.0050 -0.8856 8.6393 44 1 2.2691 1.8933 10.7168 45 1 3.0674 2.9148 8.6235 46 1 -0.1327 0.5957 2.7810 47 1 -3.3023 1.5007 3.3137 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672171160.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:24 Heat of formation + Delta-G solvation = 39.583520 kcal Electronic energy + Delta-G solvation = -29483.060840 eV Core-core repulsion = 25631.009539 eV Total energy + Delta-G solvation = -3852.051301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.45341 -39.54824 -38.64811 -36.01251 -33.97682 -33.36817 -32.65355 -31.84602 -31.17132 -29.78062 -28.88533 -27.34218 -24.99329 -24.06515 -23.41715 -23.16980 -22.60395 -20.78129 -20.19702 -19.61920 -18.04708 -17.53834 -16.53613 -16.02339 -15.66109 -15.54543 -15.32374 -15.16270 -14.78876 -14.69407 -14.22069 -14.00800 -13.78528 -13.66015 -13.33412 -13.30943 -13.14282 -12.78076 -12.55504 -12.42681 -12.11309 -11.71266 -11.64590 -11.24775 -11.21473 -11.07434 -10.90115 -10.76506 -10.28207 -10.15503 -10.07077 -9.95370 -9.86326 -9.75196 -9.45887 -9.22786 -9.03579 -8.61595 -8.31922 -8.10801 -7.15732 -5.92010 -3.22647 0.77326 1.06932 1.85711 1.87437 3.09165 3.35753 3.41094 3.44280 3.45538 3.91675 4.21545 4.37748 4.51364 4.69384 4.83009 4.99353 5.06683 5.15164 5.24444 5.31363 5.37649 5.47598 5.50773 5.55757 5.59298 5.68690 5.71401 5.77878 5.83553 5.97535 6.00624 6.03670 6.08549 6.09384 6.26391 6.42282 6.48580 6.52736 6.55148 6.56425 6.63846 6.79124 6.93449 7.00415 7.20694 7.32190 7.49438 7.65630 7.82735 7.86450 8.23408 8.45762 9.37953 9.82474 10.19842 11.29108 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010156 B = 0.003873 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.301102 B = 7227.162002 C = 8255.116830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.076 4.076 3 C -0.063 4.063 4 C -0.125 4.125 5 C -0.130 4.130 6 C -0.130 4.130 7 C -0.111 4.111 8 C -0.061 4.061 9 C 0.196 3.804 10 H 0.072 0.928 11 C 0.106 3.894 12 N -0.690 5.690 13 C 0.552 3.448 14 O -0.545 6.545 15 C -0.079 4.079 16 C -0.134 4.134 17 C 0.095 3.905 18 N -0.475 5.475 19 C 0.089 3.911 20 C -0.120 4.120 21 N -0.705 5.705 22 C -0.234 4.234 23 H 0.072 0.928 24 C -0.002 4.002 25 N -0.928 5.928 26 Si 0.898 3.102 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.111 0.889 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.121 0.879 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.403 0.597 42 H 0.144 0.856 43 H 0.161 0.839 44 H 0.160 0.840 45 H 0.146 0.854 46 H 0.387 0.613 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.761 -4.168 1.537 10.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.113 4.113 3 C -0.063 4.063 4 C -0.143 4.143 5 C -0.148 4.148 6 C -0.148 4.148 7 C -0.130 4.130 8 C -0.064 4.064 9 C 0.086 3.914 10 H 0.090 0.910 11 C -0.020 4.020 12 N -0.340 5.340 13 C 0.338 3.662 14 O -0.424 6.424 15 C -0.091 4.091 16 C -0.155 4.155 17 C -0.062 4.062 18 N -0.185 5.185 19 C -0.067 4.067 20 C -0.141 4.141 21 N -0.345 5.345 22 C -0.365 4.365 23 H 0.090 0.910 24 C -0.199 4.199 25 N -0.576 5.576 26 Si 0.729 3.271 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.129 0.871 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.139 0.861 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.240 0.760 42 H 0.161 0.839 43 H 0.179 0.821 44 H 0.177 0.823 45 H 0.163 0.837 46 H 0.223 0.777 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.916 -3.702 2.291 10.829 hybrid contribution -1.005 0.896 -1.047 1.705 sum 8.911 -2.806 1.244 9.425 Atomic orbital electron populations 1.22087 0.93532 1.01081 1.05507 1.20457 0.97400 0.92317 1.01106 1.19650 0.97822 0.96413 0.92448 1.20889 1.00997 0.95260 0.97142 1.20945 1.01404 0.94970 0.97530 1.21011 1.01571 0.99388 0.92844 1.21164 0.98940 0.94839 0.98030 1.20191 0.96346 0.94261 0.95612 1.19375 0.86905 0.96303 0.88866 0.90979 1.22050 0.97227 0.99454 0.83234 1.45634 1.47789 1.35341 1.05199 1.18101 0.81242 0.83271 0.83632 1.90735 1.36264 1.27824 1.87578 1.20501 0.97688 0.96312 0.94572 1.22472 0.96458 0.95877 1.00691 1.22757 0.97478 0.98788 0.87180 1.67542 1.09798 1.10182 1.30970 1.22746 0.93685 0.92255 0.98055 1.22295 0.99575 1.00306 0.91875 1.42488 0.98952 1.07632 1.85478 1.19118 0.90398 0.87234 1.39765 0.90997 1.24636 0.96726 0.96586 1.01910 1.69623 1.09293 1.24522 1.54131 0.86258 0.80159 0.83529 0.77132 1.20556 1.21887 1.21945 0.94007 0.93999 0.87058 0.91582 0.92769 0.87006 0.87088 0.86972 0.86089 0.92396 0.90727 0.76009 0.83857 0.82130 0.82300 0.83666 0.77667 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.88 37.16 0.37 -2.42 16 2 C -0.08 -1.11 5.56 -27.88 -0.16 -1.27 16 3 C -0.06 -1.02 5.13 -104.63 -0.54 -1.56 16 4 C -0.12 -1.89 9.68 -39.58 -0.38 -2.27 16 5 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 6 C -0.13 -1.99 10.05 -39.58 -0.40 -2.39 16 7 C -0.11 -1.87 8.52 -39.58 -0.34 -2.20 16 8 C -0.06 -1.04 4.60 -104.62 -0.48 -1.53 16 9 C 0.20 3.28 2.45 -69.09 -0.17 3.11 16 10 H 0.07 1.07 6.56 -51.93 -0.34 0.73 16 11 C 0.11 1.79 4.11 -4.04 -0.02 1.77 16 12 N -0.69 -11.20 5.35 -61.16 -0.33 -11.52 16 13 C 0.55 9.42 7.80 -12.19 -0.10 9.33 16 14 O -0.55 -10.79 16.45 5.35 0.09 -10.70 16 15 C -0.08 -1.16 5.91 -104.65 -0.62 -1.78 16 16 C -0.13 -1.73 9.62 -39.02 -0.38 -2.11 16 17 C 0.09 1.15 11.17 -17.59 -0.20 0.95 16 18 N -0.48 -6.20 10.34 -13.30 -0.14 -6.34 16 19 C 0.09 1.05 11.17 -17.59 -0.20 0.86 16 20 C -0.12 -1.57 9.68 -39.03 -0.38 -1.95 16 21 N -0.70 -14.07 2.73 -54.55 -0.15 -14.22 16 22 C -0.23 -5.60 8.65 -15.06 -0.13 -5.73 16 23 H 0.07 1.80 6.93 -52.48 -0.36 1.43 16 24 C 0.00 -0.06 5.50 -17.43 -0.10 -0.15 16 25 N -0.93 -24.68 13.06 55.49 0.72 -23.96 16 26 Si 0.90 21.59 29.55 -169.99 -5.02 16.57 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.11 2.25 4.71 -51.93 -0.24 2.01 16 33 H 0.07 0.92 6.38 -51.93 -0.33 0.59 16 34 H 0.05 0.70 8.05 -51.93 -0.42 0.28 16 35 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 37 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.12 2.02 5.84 -52.49 -0.31 1.71 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 1.44 6.05 -51.93 -0.31 1.13 16 41 H 0.40 6.11 6.28 -40.82 -0.26 5.86 16 42 H 0.14 1.68 6.54 -52.49 -0.34 1.33 16 43 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 44 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 45 H 0.15 1.79 7.74 -52.49 -0.41 1.39 16 46 H 0.39 8.17 7.20 -40.82 -0.29 7.87 16 47 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 383.65 15.07 5.78 5.78 Total: -1.00 -29.28 383.65 -9.77 -39.06 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -6.14 Total: 16.97 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -4.59 Total: -11.64 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.11 Total: -56.04 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.28 -9.77 -39.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672171160.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.642 kcal (2) G-P(sol) polarization free energy of solvation -29.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds