Wall clock time and date at job start Tue Mar 31 2020 22:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39673 * 127.31789 * 2 1 4 4 N 1.30862 * 107.86014 * 180.26532 * 3 2 1 5 5 N 1.28439 * 110.92873 * 359.78145 * 4 3 2 6 6 C 1.46494 * 125.19320 * 180.02562 * 5 4 3 7 7 C 1.36606 * 109.61759 * 359.97438 * 5 4 3 8 8 C 1.47159 * 126.88200 * 179.97438 * 7 5 4 9 9 O 1.21624 * 120.00070 * 99.44263 * 8 7 5 10 10 N 1.34783 * 119.99968 * 279.43561 * 8 7 5 11 11 C 1.46497 * 120.00039 * 174.84892 * 10 8 7 12 12 C 1.53001 * 109.47360 * 180.02562 * 11 10 8 13 13 H 1.09006 * 109.46862 * 305.00822 * 12 11 10 14 14 O 1.42902 * 109.46945 * 65.00320 * 12 11 10 15 15 C 1.53002 * 109.47257 * 185.00382 * 12 11 10 16 16 N 1.46903 * 109.46610 * 180.02562 * 15 12 11 17 17 C 1.46900 * 110.99648 * 179.97438 * 16 15 12 18 18 C 1.50697 * 109.47308 * 179.97438 * 17 16 15 19 19 O 1.21291 * 119.99957 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99968 * 179.97438 * 18 17 16 21 21 C 1.37104 * 119.99834 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99886 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00129 * 180.02562 * 21 20 18 24 24 N 1.31416 * 119.99878 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00297 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47357 * 89.99543 * 25 23 21 27 27 H 1.48502 * 109.47429 * 210.00220 * 25 23 21 28 28 H 1.48508 * 109.47069 * 329.99744 * 25 23 21 29 29 H 1.08999 * 109.47599 * 270.09813 * 1 2 3 30 30 H 1.09007 * 109.47407 * 30.10301 * 1 2 3 31 31 H 1.09000 * 109.46858 * 150.09802 * 1 2 3 32 32 H 1.08004 * 126.07192 * 0.06444 * 3 2 1 33 33 H 1.09002 * 109.47138 * 274.84173 * 6 5 4 34 34 H 1.09004 * 109.47409 * 34.84347 * 6 5 4 35 35 H 1.09001 * 109.47554 * 154.84446 * 6 5 4 36 36 H 0.97005 * 119.99889 * 354.85765 * 10 8 7 37 37 H 1.09010 * 109.46841 * 60.00732 * 11 10 8 38 38 H 1.08997 * 109.47550 * 300.00660 * 11 10 8 39 39 H 0.96701 * 113.99547 * 59.99756 * 14 12 11 40 40 H 1.08995 * 109.46846 * 299.99868 * 15 12 11 41 41 H 1.08996 * 109.46926 * 60.00167 * 15 12 11 42 42 H 1.00895 * 111.00148 * 303.95558 * 16 15 12 43 43 H 1.09006 * 109.47173 * 300.00391 * 17 16 15 44 44 H 1.09007 * 109.46964 * 59.99823 * 17 16 15 45 45 H 0.96994 * 120.00559 * 0.02562 * 20 18 17 46 46 H 0.96992 * 119.99893 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3537 1.1108 0.0000 4 7 3.5876 0.6749 -0.0058 5 7 3.6206 -0.6091 -0.0049 6 6 4.8390 -1.4224 -0.0098 7 6 2.3461 -1.1006 0.0024 8 6 1.9456 -2.5166 0.0051 9 8 1.6195 -3.0544 1.0462 10 7 1.9399 -3.2176 -1.1461 11 6 1.6510 -4.6537 -1.1278 12 6 1.7083 -5.2037 -2.5544 13 1 1.0329 -4.6325 -3.1913 14 8 3.0423 -5.0929 -3.0544 15 6 1.2852 -6.6741 -2.5515 16 7 1.3408 -7.2022 -3.9212 17 6 0.9408 -8.6152 -3.9571 18 6 1.0094 -9.1208 -5.3751 19 8 1.3579 -8.3774 -6.2678 20 7 0.6847 -10.3995 -5.6510 21 6 0.7477 -10.8596 -6.9410 22 1 1.0580 -10.1976 -7.7359 23 6 0.4124 -12.1776 -7.2257 24 7 0.0344 -12.9830 -6.2585 25 14 0.4989 -12.8048 -8.9831 26 1 1.8535 -13.3532 -9.2469 27 1 -0.5142 -13.8728 -9.1780 28 1 0.2263 -11.6866 -9.9217 29 1 -0.3634 0.0018 1.0276 30 1 -0.3634 0.8891 -0.5155 31 1 -0.3633 -0.8909 -0.5123 32 1 2.0450 2.1458 0.0010 33 1 5.1848 -1.5527 -1.0353 34 1 5.6122 -0.9221 0.5735 35 1 4.6269 -2.3974 0.4288 36 1 2.1272 -2.7712 -1.9867 37 1 0.6561 -4.8190 -0.7140 38 1 2.3903 -5.1653 -0.5116 39 1 3.6985 -5.5775 -2.5351 40 1 1.9606 -7.2452 -1.9145 41 1 0.2676 -6.7586 -2.1701 42 1 0.7728 -6.6492 -4.5453 43 1 1.6138 -9.1995 -3.3296 44 1 -0.0793 -8.7136 -3.5857 45 1 0.4064 -10.9942 -4.9371 46 1 -0.1993 -13.9032 -6.4572 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699060402.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:27 Heat of formation + Delta-G solvation = -41.783774 kcal Electronic energy + Delta-G solvation = -28213.795542 eV Core-core repulsion = 23947.366627 eV Total energy + Delta-G solvation = -4266.428915 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.91165 -39.97363 -38.54306 -37.88453 -35.08071 -34.62540 -34.40544 -33.81727 -32.37779 -31.26809 -30.46398 -28.86661 -27.27365 -26.53948 -25.10724 -23.65868 -22.55827 -22.08999 -21.35152 -20.22256 -19.28776 -18.42616 -17.92893 -17.30069 -16.78611 -16.63817 -16.19678 -15.85228 -15.58779 -15.43140 -14.94373 -14.83180 -14.52081 -14.38489 -13.87881 -13.82644 -13.75521 -13.73321 -13.44104 -13.27825 -13.04309 -12.88513 -12.66014 -12.55901 -12.52257 -11.93151 -11.59940 -11.53021 -11.25080 -11.05765 -11.04741 -10.70983 -10.41111 -10.27395 -10.21171 -9.64073 -9.56267 -9.53192 -9.07924 -8.50130 -8.11994 -7.98541 -6.44023 -3.84957 1.21788 1.67419 2.27237 2.30142 2.69370 3.16425 3.25213 3.30984 3.85093 3.89376 4.01498 4.11256 4.18114 4.25333 4.58018 4.60293 4.62573 4.68114 4.73721 4.83316 4.89123 4.97940 5.03810 5.18960 5.21103 5.24599 5.26268 5.32448 5.44478 5.58372 5.67116 5.71065 5.74091 5.83829 5.90843 6.15521 6.21690 6.31626 6.90543 7.07890 7.41866 7.53171 7.58011 7.59768 7.65773 8.03807 8.58641 9.15599 9.51559 10.02952 10.73675 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029802 B = 0.001547 C = 0.001536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.322092 B =18090.389566 C =18228.901194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.155 4.155 3 C 0.005 3.995 4 N -0.281 5.281 5 N -0.272 5.272 6 C 0.086 3.914 7 C -0.036 4.036 8 C 0.594 3.406 9 O -0.520 6.520 10 N -0.710 5.710 11 C 0.086 3.914 12 C 0.101 3.899 13 H 0.105 0.895 14 O -0.542 6.542 15 C 0.030 3.970 16 N -0.658 5.658 17 C 0.050 3.950 18 C 0.440 3.560 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.187 0.813 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.409 0.591 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.375 0.625 40 H 0.078 0.922 41 H 0.039 0.961 42 H 0.351 0.649 43 H 0.086 0.914 44 H 0.043 0.957 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.562 22.549 16.097 27.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.166 4.166 3 C -0.172 4.172 4 N -0.112 5.112 5 N -0.060 5.060 6 C -0.054 4.054 7 C -0.164 4.164 8 C 0.376 3.624 9 O -0.393 6.393 10 N -0.362 5.362 11 C -0.038 4.038 12 C 0.040 3.960 13 H 0.123 0.877 14 O -0.346 6.346 15 C -0.101 4.101 16 N -0.291 5.291 17 C -0.082 4.082 18 C 0.225 3.775 19 O -0.466 6.466 20 N -0.200 5.200 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.204 0.796 33 H 0.109 0.891 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.245 0.755 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.223 0.777 40 H 0.096 0.904 41 H 0.057 0.943 42 H 0.170 0.830 43 H 0.104 0.896 44 H 0.061 0.939 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.157 22.895 15.805 28.295 hybrid contribution -1.546 -1.212 -0.123 1.968 sum 3.612 21.683 15.682 27.002 Atomic orbital electron populations 1.20139 0.88255 1.02716 1.02531 1.20717 0.96949 0.90691 1.08209 1.23472 0.87655 0.99985 1.06119 1.73155 1.24507 0.93171 1.20371 1.45538 1.05432 1.03744 1.51296 1.22210 0.83819 0.94471 1.04917 1.21279 0.86219 0.94534 1.14396 1.17009 0.77965 0.83463 0.83963 1.90868 1.46922 1.69750 1.31793 1.45901 1.71119 1.09667 1.09521 1.22201 1.02939 0.80095 0.98573 1.22105 0.86049 0.95485 0.92316 0.87692 1.86645 1.16048 1.74959 1.56979 1.22559 1.00333 0.94813 0.92418 1.59946 1.60925 1.02231 1.05970 1.21692 0.99081 0.89984 0.97462 1.19778 0.84643 0.83506 0.89548 1.90535 1.52077 1.56407 1.47538 1.41862 1.58939 1.09276 1.09949 1.19712 1.42575 0.95351 0.85317 0.87897 1.25266 0.97023 0.95913 0.99735 1.69611 1.45562 1.06833 1.32305 0.85848 0.77965 0.78482 0.81932 1.20375 1.20933 1.19422 0.91025 0.90817 0.91891 0.79634 0.89144 0.88243 0.88985 0.75497 0.89935 0.90554 0.77740 0.90394 0.94291 0.82971 0.89606 0.93884 0.77473 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.28 36.01 0.37 -0.17 16 2 C -0.15 -1.39 6.29 -104.03 -0.65 -2.05 16 3 C 0.00 0.04 12.00 -17.43 -0.21 -0.17 16 4 N -0.28 -2.81 11.90 30.59 0.36 -2.45 16 5 N -0.27 -2.46 3.75 -63.89 -0.24 -2.70 16 6 C 0.09 0.48 11.21 59.84 0.67 1.15 16 7 C -0.04 -0.35 6.71 -82.06 -0.55 -0.90 16 8 C 0.59 5.92 6.77 -12.64 -0.09 5.84 16 9 O -0.52 -6.97 17.12 5.26 0.09 -6.88 16 10 N -0.71 -5.39 5.50 -61.47 -0.34 -5.73 16 11 C 0.09 0.63 5.32 -4.04 -0.02 0.60 16 12 C 0.10 0.83 3.21 -26.73 -0.09 0.74 16 13 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 14 O -0.54 -5.23 13.15 -35.23 -0.46 -5.69 16 15 C 0.03 0.29 5.35 -3.82 -0.02 0.27 16 16 N -0.66 -9.79 5.99 -115.05 -0.69 -10.48 16 17 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 18 C 0.44 10.21 7.82 -10.99 -0.09 10.12 16 19 O -0.58 -15.68 15.78 5.55 0.09 -15.60 16 20 N -0.56 -14.11 5.29 -10.96 -0.06 -14.17 16 21 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.32 13.05 55.50 0.72 -23.59 16 25 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.06 0.44 8.07 -51.93 -0.42 0.03 16 32 H 0.19 1.01 8.06 -52.48 -0.42 0.58 16 33 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.46 7.66 -51.93 -0.40 0.07 16 36 H 0.41 2.77 8.46 -40.82 -0.35 2.42 16 37 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.38 2.61 9.05 45.56 0.41 3.02 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.35 5.52 8.43 -39.29 -0.33 5.19 16 43 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 46 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 401.35 15.07 6.05 6.05 Total: -1.00 -36.27 401.35 -6.43 -42.70 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -5.99 Total: 14.35 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: -0.94 Total: 8.29 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.24 Total: -59.11 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.29 Total: -28.16 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.27 -6.43 -42.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699060402.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.913 kcal (2) G-P(sol) polarization free energy of solvation -36.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds