Wall clock time and date at job start Tue Mar 31 2020 22:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39673 * 127.31789 * 2 1 4 4 N 1.30862 * 107.86014 * 180.26532 * 3 2 1 5 5 N 1.28439 * 110.92873 * 359.78145 * 4 3 2 6 6 C 1.46494 * 125.19320 * 180.02562 * 5 4 3 7 7 C 1.36606 * 109.61759 * 359.97438 * 5 4 3 8 8 C 1.47159 * 126.88200 * 179.97438 * 7 5 4 9 9 O 1.21624 * 120.00070 * 99.44263 * 8 7 5 10 10 N 1.34783 * 119.99968 * 279.43561 * 8 7 5 11 11 C 1.46497 * 120.00039 * 174.84892 * 10 8 7 12 12 C 1.53001 * 109.47360 * 180.02562 * 11 10 8 13 13 H 1.09006 * 109.46862 * 305.00822 * 12 11 10 14 14 O 1.42902 * 109.46945 * 65.00320 * 12 11 10 15 15 C 1.53002 * 109.47257 * 185.00382 * 12 11 10 16 16 N 1.46903 * 109.46610 * 180.02562 * 15 12 11 17 17 C 1.46900 * 110.99648 * 179.97438 * 16 15 12 18 18 C 1.50697 * 109.47308 * 179.97438 * 17 16 15 19 19 O 1.21291 * 119.99957 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99968 * 179.97438 * 18 17 16 21 21 C 1.37104 * 119.99834 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99886 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00129 * 180.02562 * 21 20 18 24 24 N 1.31416 * 119.99878 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00297 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47357 * 89.99543 * 25 23 21 27 27 H 1.48502 * 109.47429 * 210.00220 * 25 23 21 28 28 H 1.48508 * 109.47069 * 329.99744 * 25 23 21 29 29 H 1.08999 * 109.47599 * 270.09813 * 1 2 3 30 30 H 1.09007 * 109.47407 * 30.10301 * 1 2 3 31 31 H 1.09000 * 109.46858 * 150.09802 * 1 2 3 32 32 H 1.08004 * 126.07192 * 0.06444 * 3 2 1 33 33 H 1.09002 * 109.47138 * 274.84173 * 6 5 4 34 34 H 1.09004 * 109.47409 * 34.84347 * 6 5 4 35 35 H 1.09001 * 109.47554 * 154.84446 * 6 5 4 36 36 H 0.97005 * 119.99889 * 354.85765 * 10 8 7 37 37 H 1.09010 * 109.46841 * 60.00732 * 11 10 8 38 38 H 1.08997 * 109.47550 * 300.00660 * 11 10 8 39 39 H 0.96701 * 113.99547 * 59.99756 * 14 12 11 40 40 H 1.08995 * 109.46846 * 299.99868 * 15 12 11 41 41 H 1.08996 * 109.46926 * 60.00167 * 15 12 11 42 42 H 1.00895 * 111.00148 * 303.95558 * 16 15 12 43 43 H 1.09006 * 109.47173 * 300.00391 * 17 16 15 44 44 H 1.09007 * 109.46964 * 59.99823 * 17 16 15 45 45 H 0.96994 * 120.00559 * 0.02562 * 20 18 17 46 46 H 0.96992 * 119.99893 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3537 1.1108 0.0000 4 7 3.5876 0.6749 -0.0058 5 7 3.6206 -0.6091 -0.0049 6 6 4.8390 -1.4224 -0.0098 7 6 2.3461 -1.1006 0.0024 8 6 1.9456 -2.5166 0.0051 9 8 1.6195 -3.0544 1.0462 10 7 1.9399 -3.2176 -1.1461 11 6 1.6510 -4.6537 -1.1278 12 6 1.7083 -5.2037 -2.5544 13 1 1.0329 -4.6325 -3.1913 14 8 3.0423 -5.0929 -3.0544 15 6 1.2852 -6.6741 -2.5515 16 7 1.3408 -7.2022 -3.9212 17 6 0.9408 -8.6152 -3.9571 18 6 1.0094 -9.1208 -5.3751 19 8 1.3579 -8.3774 -6.2678 20 7 0.6847 -10.3995 -5.6510 21 6 0.7477 -10.8596 -6.9410 22 1 1.0580 -10.1976 -7.7359 23 6 0.4124 -12.1776 -7.2257 24 7 0.0344 -12.9830 -6.2585 25 14 0.4989 -12.8048 -8.9831 26 1 1.8535 -13.3532 -9.2469 27 1 -0.5142 -13.8728 -9.1780 28 1 0.2263 -11.6866 -9.9217 29 1 -0.3634 0.0018 1.0276 30 1 -0.3634 0.8891 -0.5155 31 1 -0.3633 -0.8909 -0.5123 32 1 2.0450 2.1458 0.0010 33 1 5.1848 -1.5527 -1.0353 34 1 5.6122 -0.9221 0.5735 35 1 4.6269 -2.3974 0.4288 36 1 2.1272 -2.7712 -1.9867 37 1 0.6561 -4.8190 -0.7140 38 1 2.3903 -5.1653 -0.5116 39 1 3.6985 -5.5775 -2.5351 40 1 1.9606 -7.2452 -1.9145 41 1 0.2676 -6.7586 -2.1701 42 1 0.7728 -6.6492 -4.5453 43 1 1.6138 -9.1995 -3.3296 44 1 -0.0793 -8.7136 -3.5857 45 1 0.4064 -10.9942 -4.9371 46 1 -0.1993 -13.9032 -6.4572 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699060402.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:26 Heat of formation + Delta-G solvation = -74.226208 kcal Electronic energy + Delta-G solvation = -28215.202352 eV Core-core repulsion = 23947.366627 eV Total energy + Delta-G solvation = -4267.835724 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.55085 -40.74376 -40.15722 -38.90062 -36.33776 -35.70001 -35.36164 -34.97781 -33.26644 -33.01808 -31.32515 -29.54497 -28.46092 -27.11825 -26.59091 -24.90023 -23.36787 -22.81540 -21.95583 -21.12731 -20.85944 -19.90870 -19.07235 -18.28482 -17.59595 -17.46651 -17.22469 -16.82403 -16.62227 -16.47313 -16.22669 -16.00933 -15.75956 -15.41982 -15.09767 -14.94428 -14.51828 -14.36841 -14.31272 -14.25617 -13.99056 -13.56882 -13.48094 -13.39002 -13.37207 -13.19150 -13.09901 -12.95488 -12.68636 -12.41776 -12.12182 -11.96983 -11.72618 -11.50656 -11.48829 -11.01364 -10.34342 -10.32629 -10.22036 -10.01283 -9.70865 -9.28356 -8.46746 -5.95455 0.54406 0.99307 1.38257 1.42213 1.54677 1.62657 1.65145 2.03953 2.06015 2.29616 2.88260 3.20715 3.40492 3.46336 3.52456 3.60290 3.81024 3.99651 4.09996 4.11643 4.17769 4.23982 4.32666 4.41505 4.45614 4.51266 4.51795 4.57299 4.62437 4.66748 4.74713 4.81413 5.02776 5.07571 5.10966 5.15934 5.41052 5.57117 5.72534 5.87076 6.09292 6.22064 6.37483 6.60394 6.85006 6.91128 7.00894 7.12965 7.56756 8.12322 8.70535 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029802 B = 0.001547 C = 0.001536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.322092 B =18090.389566 C =18228.901194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.165 4.165 3 C 0.000 4.000 4 N -0.303 5.303 5 N -0.275 5.275 6 C 0.078 3.922 7 C -0.055 4.055 8 C 0.601 3.399 9 O -0.558 6.558 10 N -0.695 5.695 11 C 0.094 3.906 12 C 0.113 3.887 13 H 0.103 0.897 14 O -0.559 6.559 15 C 0.030 3.970 16 N -0.675 5.675 17 C 0.065 3.935 18 C 0.436 3.564 19 O -0.624 6.624 20 N -0.574 5.574 21 C -0.335 4.335 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.273 1.273 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.213 0.787 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.415 0.585 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.387 0.613 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.343 0.657 43 H 0.105 0.895 44 H 0.067 0.933 45 H 0.397 0.603 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.459 22.773 16.621 28.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.176 4.176 3 C -0.176 4.176 4 N -0.134 5.134 5 N -0.064 5.064 6 C -0.061 4.061 7 C -0.183 4.183 8 C 0.384 3.616 9 O -0.435 6.435 10 N -0.347 5.347 11 C -0.030 4.030 12 C 0.053 3.947 13 H 0.121 0.879 14 O -0.366 6.366 15 C -0.099 4.099 16 N -0.307 5.307 17 C -0.067 4.067 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.211 5.211 21 C -0.465 4.465 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.198 1.198 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.229 0.771 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.113 0.887 36 H 0.252 0.748 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.236 0.764 40 H 0.110 0.890 41 H 0.074 0.926 42 H 0.162 0.838 43 H 0.124 0.876 44 H 0.085 0.915 45 H 0.231 0.769 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.070 23.109 16.343 28.754 hybrid contribution -1.482 -1.226 -0.265 1.941 sum 3.588 21.882 16.078 27.390 Atomic orbital electron populations 1.20188 0.87038 1.03526 1.02724 1.21086 0.97980 0.90664 1.07873 1.23965 0.87170 1.01181 1.05304 1.73133 1.25348 0.93716 1.21211 1.45823 1.05970 1.03694 1.50863 1.22457 0.83137 0.94373 1.06130 1.21400 0.86963 0.94590 1.15377 1.17001 0.77326 0.83504 0.83769 1.90847 1.49018 1.70545 1.33129 1.45809 1.69894 1.09793 1.09174 1.22139 1.03317 0.79691 0.97890 1.21960 0.85528 0.94520 0.92688 0.87889 1.86623 1.16809 1.75354 1.57816 1.22665 1.01784 0.95648 0.89838 1.59939 1.60995 1.01169 1.08596 1.21544 1.01111 0.91276 0.92754 1.20948 0.82303 0.82428 0.91961 1.90502 1.53411 1.57295 1.49816 1.41937 1.59672 1.10226 1.09263 1.19668 1.44645 0.95947 0.86202 0.90387 1.26025 0.96070 0.95528 1.03600 1.69667 1.45379 1.07189 1.33825 0.84934 0.78399 0.77861 0.77178 1.19689 1.19521 1.19825 0.91079 0.88757 0.92323 0.77085 0.87722 0.87149 0.88673 0.74819 0.89767 0.89773 0.76434 0.89033 0.92617 0.83843 0.87649 0.91494 0.76944 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.28 71.24 0.73 -0.24 16 2 C -0.17 -2.84 6.29 -19.48 -0.12 -2.96 16 3 C 0.00 0.01 12.00 85.18 1.02 1.03 16 4 N -0.30 -5.81 11.90 -57.14 -0.68 -6.49 16 5 N -0.27 -4.79 3.75 -356.03 -1.33 -6.13 16 6 C 0.08 0.80 11.21 127.77 1.43 2.23 16 7 C -0.05 -1.03 6.71 40.78 0.27 -0.76 16 8 C 0.60 11.58 6.77 86.58 0.59 12.17 16 9 O -0.56 -14.77 17.12 -4.11 -0.07 -14.84 16 10 N -0.70 -9.68 5.50 -466.63 -2.56 -12.25 16 11 C 0.09 1.18 5.32 86.38 0.46 1.64 16 12 C 0.11 1.65 3.21 30.60 0.10 1.75 16 13 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 14 O -0.56 -9.87 13.15 -148.98 -1.96 -11.83 16 15 C 0.03 0.53 5.35 86.30 0.46 0.99 16 16 N -0.67 -19.01 5.99 -517.92 -3.10 -22.11 16 17 C 0.07 2.08 6.17 85.56 0.53 2.61 16 18 C 0.44 20.28 7.82 87.66 0.69 20.97 16 19 O -0.62 -34.28 15.78 -3.06 -0.05 -34.33 16 20 N -0.57 -29.00 5.29 -306.98 -1.62 -30.62 16 21 C -0.33 -18.92 9.68 84.04 0.81 -18.11 16 22 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 23 C -0.01 -0.66 5.50 84.92 0.47 -0.19 16 24 N -0.92 -49.11 13.05 21.66 0.28 -48.82 16 25 Si 0.99 42.63 29.55 68.60 2.03 44.66 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 27 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 28 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.06 0.78 8.07 -2.39 -0.02 0.76 16 32 H 0.21 1.93 8.06 -2.91 -0.02 1.91 16 33 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.09 0.89 7.66 -2.39 -0.02 0.87 16 36 H 0.42 5.07 8.46 -92.70 -0.78 4.29 16 37 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.39 4.65 9.05 -74.06 -0.67 3.98 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.34 10.51 8.43 -89.70 -0.76 9.76 16 43 H 0.11 2.97 8.14 -2.38 -0.02 2.95 16 44 H 0.07 1.83 8.14 -2.38 -0.02 1.82 16 45 H 0.40 18.93 7.90 -92.71 -0.73 18.20 16 46 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -78.85 401.35 -3.52 -82.38 By element: Atomic # 1 Polarization: 41.16 SS G_CDS: -1.89 Total: 39.27 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: 7.44 Total: 21.12 kcal Atomic # 7 Polarization: -117.40 SS G_CDS: -9.02 Total: -126.42 kcal Atomic # 8 Polarization: -58.92 SS G_CDS: -2.08 Total: -61.00 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -78.85 -3.52 -82.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699060402.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.152 kcal (2) G-P(sol) polarization free energy of solvation -78.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds